ERISdb: a Database of Plant Splice Sites

General
Orthologs
EST
RNA-Seq
cis-regulatory elements

Sequence

atgc intronic sequence ATGC exonic sequence

ATTTGGGCCATATTTCTGCCAGCCAGTCATTGCTGGACTTGGAGATGACAACGTACCATTCATTTGTACCATGGACTGCCTCGGTGCAAAgtaggtttctgtttatgttgttttcttcttgaataaatgcttggtttgttttctgcttgagattcttgcgttttagatcctagtgaagtcgatctttttg...

Basic information

species	Zea mays
transcript	GRMZM2G045371_T02
intron #	4
splice site	5'
intron type	U2

Orthologous splice sites

atgc intronic sequence ATGC exonic sequence

upper sequence: GRMZM2G045371_T02 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os06g43570.1 (Oryza sativa), 5'ss of exon 5

ATTTGGGCCATATTTCTGCCAGCCAGTCATTGCTGGACTTGGAGATGACAACGTACCATTCATTTGTACCATGGACTGCCTCGGTGCAAAgtaggtttctgttta-tgttgttttcttcttgaataaatgcttggtttgttttctgcttgagattcttgcgt-tttagatcctagtgaagtcgatctttttg----
|||||| ||||| ||||||||||| || || |||||||||||||| ||||| |  ||||| |||||||||||||||||| | ||||||||||| || || ||| | |  ||||||  | || | | ||   ||  ||| ||||     |   |||| | |   | | |||  |  |  | | | || | ||     
ATTTGGACCATACTTCTGCCAGCCTGTTATCGCTGGACTTGGAGAGGACAATGAGCCATTTATTTGTACCATGGACTGCATTGGTGCAAAgtatgtatcagttcaattgtgtttttgtttttattcaaa--ttaatttcttttggatct---attcatacacatctggatggttatcca-ttgctcatgttctgca

upper sequence: GRMZM2G045371_T02 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA04G42830.1 (Glycine max), 5'ss of exon 2

ATTTGGGCCATATTTCTGCCAGCCAGTCATTGCTGGACTTGGAGATGACAACGTACCATTCATTTGTACCATGGACTGCCTCGGTGCAAAgtaggtttctgtt-tatgttgttttcttcttgaataaatgcttggtttgttttctgcttgag--attcttgcgttttagatc-ctagtgaagtcgatctttttg
 ||||| ||||| || |||||||| || ||||||||||| ||||||||  ||  |||||||||||| || |||||   | | || |||||||| ||||  ||  | |||    || ||      | | || |  |   | ||  || || ||  ||  |  |    || ||  ||  |  | | ||| |     
GTTTGGTCCATACTTTTGCCAGCCTGTAATTGCTGGACTAGGAGATGATGACAAACCATTCATTTGCACAATGGATGCCATTGGAGCAAAgtaagtttaagtaatctgtgcccttatttactgtttagtgttgaggaaggttagtgttttagtgatattcactgcatacatttcttctataatagatttc----

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments

ATGC    EST sequence
ATGC    genomic sequence (exon)
ATGC    genomic sequence (truncated intron)

EST: gi|60396523|gb|DN229392.1|DN229392

EST:     GGAGATGACAACGTACCATTCATTTGTACCATGGACTGCCTCGGTGCAAA                         GGAGCTGGCCAAGGATTTTGTTGTTTCTGGAACAGCATCAGAATCTTTGTA
genomic: GGAGATGACAACGTACCATTCATTTGTACCATGGACTGCCTCGGTGCAAAgtaggtttct ... tactatgcagGGAGCTGGCCAAGGATTTTGTTGTTTCTGGAACAGCATCAGAATCTTTGTA

EST: gi|18654592|gb|BM499397.1|BM499397

EST:     GGAGATGACAACGTACCATTCATTTGTACCATGGACTGCCTCGGTGCAAA                         GGAGCTGGCCAAGGATTTTGTTGTTTCTGGAACAGCATCAGAATCTTTGTA
genomic: GGAGATGACAACGTACCATTCATTTGTACCATGGACTGCCTCGGTGCAAAgtaggtttct ... tactatgcagGGAGCTGGCCAAGGATTTTGTTGTTTCTGGAACAGCATCAGAATCTTTGTA

EST: gi|5650369|gb|AI920729.1|AI920729

EST:     TGACAACGTACCATTCATTTGTACCATGGACTGCCTCGGTGCAAA                         GGAGCTGGCCAAGGATTTTGTTGTTTCTGGAACAGCATCAGAATCTTTGTA
genomic: TGACAACGTACCATTCATTTGTACCATGGACTGCCTCGGTGCAAAgtaggtttct ... tactatgcagGGAGCTGGCCAAGGATTTTGTTGTTTCTGGAACAGCATCAGAATCTTTGTA

EST: gi|37376121|gb|CF624562.1|CF624562

EST:     GGAGATGACAACGTACCATTCATTTGTACCATGGACTGCCTCGGTGCAAA                         GGAGCTGGCCAAGGATTTTGTTGTTTCTGGAACAGCATCAGAATCTTTGTA
genomic: GGAGATGACAACGTACCATTCATTTGTACCATGGACTGCCTCGGTGCAAAgtaggtttct ... tactatgcagGGAGCTGGCCAAGGATTTTGTTGTTTCTGGAACAGCATCAGAATCTTTGTA

EST: gi|71759295|gb|DR957232.1|DR957232

EST:     GGAGATGACAACGTACCATTCATTTGTACCATGGACTGCCTCGGTGCAAA                         GGAGCTGGCCAAGGATTTTGTTGTTTTTGGAACAGCATCAGAATCTTTGTA
genomic: GGAGATGACAACGTACCATTCATTTGTACCATGGACTGCCTCGGTGCAAAgtaggtttct ... tactatgcagGGAGCTGGCCAAGGATTTTGTTGTTTCTGGAACAGCATCAGAATCTTTGTA

EST: gi|211320125|gb|FL100656.1|FL100656

EST:     GGAGATGACAACGTACCATTCATTTGTACCATGGACTGCCTCGGTGCAAA                         GGAGCTGGCCAAGGATTTTGTTGTTTCTGGAACAGCATCAGAATCTTTGTA
genomic: GGAGATGACAACGTACCATTCATTTGTACCATGGACTGCCTCGGTGCAAAgtaggtttct ... tactatgcagGGAGCTGGCCAAGGATTTTGTTGTTTCTGGAACAGCATCAGAATCTTTGTA

EST: gi|211320131|gb|FL100662.1|FL100662

EST:     GGAGATGACAACGTACCATTCATTTGTACCATGGACTGCCTCGGTGCAAA                         GGAGCTGGCCAAGGATTTTGTTGTTTCTGGAACAGCATCAGAATCTTTGTA
genomic: GGAGATGACAACGTACCATTCATTTGTACCATGGACTGCCTCGGTGCAAAgtaggtttct ... tactatgcagGGAGCTGGCCAAGGATTTTGTTGTTTCTGGAACAGCATCAGAATCTTTGTA

EST: gi|76018879|gb|DT946049.1|DT946049

EST:     GGAGATGACAACGTACCATTCATTTGTACCATGGACTGCCTCGGTGCAAA                         GGAGCTGGCCAAGGATTTTGTTGTTTCTGGAACAGCATCAGAATCTTTGTA
genomic: GGAGATGACAACGTACCATTCATTTGTACCATGGACTGCCTCGGTGCAAAgtaggtttct ... tactatgcagGGAGCTGGCCAAGGATTTTGTTGTTTCTGGAACAGCATCAGAATCTTTGTA

EST: gi|5901279|gb|AW042379.1|AW042379

EST:     GGAGATGACAACGTACCATTCATTTGTACCATGGACTGCCTCGGTGCAAA                         GGAGCTGGCCAAGGATTTTGTTGNTTCTGGAACAGCATCAGAATCTTTGTA
genomic: GGAGATGACAACGTACCATTCATTTGTACCATGGACTGCCTCGGTGCAAAgtaggtttct ... tactatgcagGGAGCTGGCCAAGGATTTTGTTGTTTCTGGAACAGCATCAGAATCTTTGTA

EST: gi|211320126|gb|FL100657.1|FL100657

EST:     GGAGATGACAACGTACCATTCATTTGTACCATGGACTGCCTCGGTGCAAA                         GGAGCTGGCCAAGGATTTTGTTGTTTCTGGAACAGCATCAGAATCTTTGTA
genomic: GGAGATGACAACGTACCATTCATTTGTACCATGGACTGCCTCGGTGCAAAgtaggtttct ... tactatgcagGGAGCTGGCCAAGGATTTTGTTGTTTCTGGAACAGCATCAGAATCTTTGTA

EST: gi|89251732|gb|DY623518.1|DY623518

EST:     GGAGATGACAACGTACCATTCATTTGTACCATGGACTGCCTCGGTGCAAA                         GGAGCTGGCCAAGGATTTTGTTGTTTTTGGAACAGCATCAGAATCTTTGTA
genomic: GGAGATGACAACGTACCATTCATTTGTACCATGGACTGCCTCGGTGCAAAgtaggtttct ... tactatgcagGGAGCTGGCCAAGGATTTTGTTGTTTCTGGAACAGCATCAGAATCTTTGTA

EST: gi|8273042|gb|BE012139.1|BE012139

EST:     GGAGATGACAACGTACCATTCATTTGTACCATGGACTGCCTCGGTGCAAA                         GGAGCTGGCCAAGGATTTTGTTGTTTCTGGAACAGCATCAGAATCTTTGTA
genomic: GGAGATGACAACGTACCATTCATTTGTACCATGGACTGCCTCGGTGCAAAgtaggtttct ... tactatgcagGGAGCTGGCCAAGGATTTTGTTGTTTCTGGAACAGCATCAGAATCTTTGTA

EST: gi|32908095|gb|CF012908.1|CF012908

EST:     GGAGATGACAACGTACCATTCATTTGTACCATGGACTGCCTCGGTGCAAA                         GGAGCTGGCCAAGGATTTTGTTGTTTCTGGAACAGCATCAGAATCTTTGTA
genomic: GGAGATGACAACGTACCATTCATTTGTACCATGGACTGCCTCGGTGCAAAgtaggtttct ... tactatgcagGGAGCTGGCCAAGGATTTTGTTGTTTCTGGAACAGCATCAGAATCTTTGTA

EST: gi|15214985|gb|BI431121.1|BI431121

EST:     GGAGATGACAACGTACCATTCATTTGTACCATGGACTGCCTCGGTGCAAA                         GGAGCTGGCCAAGGATTTTGTTGTTTCTGGAACAGCATCAGAATCTTTGTA
genomic: GGAGATGACAACGTACCATTCATTTGTACCATGGACTGCCTCGGTGCAAAgtaggtttct ... tactatgcagGGAGCTGGCCAAGGATTTTGTTGTTTCTGGAACAGCATCAGAATCTTTGTA

EST: gi|32802701|gb|CD954937.1|CD954937

EST:     GGAGATGACAACGTACCATTCATTCGTACCATGGACTGCCTCGGTGCAAA                         GGAGCTGGCCAAGGATTTTGTTGTTTCTGGAACAGCATCAGAATCCTTGTA
genomic: GGAGATGACAACGTACCATTCATTTGTACCATGGACTGCCTCGGTGCAAAgtaggtttct ... tactatgcagGGAGCTGGCCAAGGATTTTGTTGTTTCTGGAACAGCATCAGAATCTTTGTA

EST: gi|76923710|gb|DV169620.1|DV169620

EST:     GGAGATGACAACGTACCATTCATTTGTACCATGGACTGCCTCGGTGCAAA                         GGAGCTGGCCAAGGATTTTGTTGTTTCTGGAACAGCATCAGAATCTTTGTA
genomic: GGAGATGACAACGTACCATTCATTTGTACCATGGACTGCCTCGGTGCAAAgtaggtttct ... tactatgcagGGAGCTGGCCAAGGATTTTGTTGTTTCTGGAACAGCATCAGAATCTTTGTA

EST: gi|113702572|gb|EE680076.1|EE680076

EST:     GGAGATGACAACGTACCATTCATTTGTACCATGGACTGCCTCGGTGCAAA                         GGAGCTGGCCAAGGATTTTGTTGTTTCTGGAACAGCATCAGAATCTTTGTA
genomic: GGAGATGACAACGTACCATTCATTTGTACCATGGACTGCCTCGGTGCAAAgtaggtttct ... tactatgcagGGAGCTGGCCAAGGATTTTGTTGTTTCTGGAACAGCATCAGAATCTTTGTA

EST: gi|19351573|gb|BM896105.1|BM896105

EST:     GGAGATGACAACGTACCATTCATTTGTACCATGGACTGCCTCGGTGCAAA                         GGAGCTGGCCAAGGATTTTGTTGTTTCTGGAACAGCATCAGAATCTTTGTA
genomic: GGAGATGACAACGTACCATTCATTTGTACCATGGACTGCCTCGGTGCAAAgtaggtttct ... tactatgcagGGAGCTGGCCAAGGATTTTGTTGTTTCTGGAACAGCATCAGAATCTTTGTA

EST: gi|211320129|gb|FL100660.1|FL100660

EST:     GGAGATGACAACGTACCATTCATTTGTACCATGGACTGCCTCGGTGCAAA                         GGAGCTGGGCCAAG-ATTTTGTTGTTTCTGGAACAGCATCAGAATCTTTGT
genomic: GGAGATGACAACGTACCATTCATTTGTACCATGGACTGCCTCGGTGCAAAgtaggtttct ... tactatgcagGGAGCTGG-CCAAGGATTTTGTTGTTTCTGGAACAGCATCAGAATCTTTGT

EST: gi|211320128|gb|FL100659.1|FL100659

EST:     GGAGATGACAACGTACCATTCATTTGTACCATGGACTGCCTCGGTGCAAA                         GGAGCTGGCCAAGGATTTTGTTGTTTCTGGGACAGCATCAGAATCTTTGGA
genomic: GGAGATGACAACGTACCATTCATTTGTACCATGGACTGCCTCGGTGCAAAgtaggtttct ... tactatgcagGGAGCTGGCCAAGGATTTTGTTGTTTCTGGAACAGCATCAGAATCTTTGTA

EST: gi|32913371|gb|CF018183.1|CF018183

EST:     GGAGATGACAACGTACCATTCATTTGTACCATGGACTGCCTCGGTGCAAA                         GGAGCTGGCCAAGGATTTTGTTGTTTCTGGAACAGCATCAGAATCTTTGTA
genomic: GGAGATGACAACGTACCATTCATTTGTACCATGGACTGCCTCGGTGCAAAgtaggtttct ... tactatgcagGGAGCTGGCCAAGGATTTTGTTGTTTCTGGAACAGCATCAGAATCTTTGTA

EST: gi|8577257|gb|BE129894.1|BE129894

EST:     GGAGATGACAACGTACCATTCATTTGTACCATGGACTGCCTCGGTGCAAA                         GGAGCTGGCCAAGGATTTTGTTGTTTCTGGAACAGCATCAGAATCTTTGTA
genomic: GGAGATGACAACGTACCATTCATTTGTACCATGGACTGCCTCGGTGCAAAgtaggtttct ... tactatgcagGGAGCTGGCCAAGGATTTTGTTGTTTCTGGAACAGCATCAGAATCTTTGTA

EST: gi|5847042|gb|AW000121.1|AW000121

EST:     GGAGATGACAACGTACCATTCATTTGTACCATGGACTGCCTCGGTGCAAA                         GGAGCTGGCCAAGGATTTTGTTGTTTCTGGAACAGCATCAGAATCTTTGTA
genomic: GGAGATGACAACGTACCATTCATTTGTACCATGGACTGCCTCGGTGCAAAgtaggtttct ... tactatgcagGGAGCTGGCCAAGGATTTTGTTGTTTCTGGAACAGCATCAGAATCTTTGTA

EST: gi|60398455|gb|DN231271.1|DN231271

EST:     GGAGATGACAACGTACCATTCATTTGTACCATGGACTGCCTCGGTGCAAA                         GGAGCTGGCCAAGGATTTTGTTGTTTCTGGAACAGCATCAGAATCTTTGTA
genomic: GGAGATGACAACGTACCATTCATTTGTACCATGGACTGCCTCGGTGCAAAgtaggtttct ... tactatgcagGGAGCTGGCCAAGGATTTTGTTGTTTCTGGAACAGCATCAGAATCTTTGTA

EST: gi|5847438|gb|AW000517.1|AW000517

EST:     GGAGATGACAACGTACCATTCATTTGTACCATGGACTGCCTCGGTGCAAA                         GGAGCTGGCCAAGGATTTTGTTGTTTCTGGAACAGCATCAGAATCTTTGTA
genomic: GGAGATGACAACGTACCATTCATTTGTACCATGGACTGCCTCGGTGCAAAgtaggtttct ... tactatgcagGGAGCTGGCCAAGGATTTTGTTGTTTCTGGAACAGCATCAGAATCTTTGTA

EST: gi|19351598|gb|BM896130.1|BM896130

EST:     GGAGATGACAACGTACCATTCATTTGTACCATGGACTGCCTCGGTGCAAA                         GGAGCTGGCCAAGGATTTTGTTGTTTCTGGAACAGCATCAGAATCTTTGTA
genomic: GGAGATGACAACGTACCATTCATTTGTACCATGGACTGCCTCGGTGCAAAgtaggtttct ... tactatgcagGGAGCTGGCCAAGGATTTTGTTGTTTCTGGAACAGCATCAGAATCTTTGTA

EST: gi|14244825|gb|BG842763.2|BG842763

EST:     GGAGATGACAACGTACCATTCATTTGTACCATGGACTGCCTCGGTGCAAA                         GGAGCTGGCCAAGGATTTTGTTGTTTCTGGAACAGCATCAGAATCTTTGTA
genomic: GGAGATGACAACGTACCATTCATTTGTACCATGGACTGCCTCGGTGCAAAgtaggtttct ... tactatgcagGGAGCTGGCCAAGGATTTTGTTGTTTCTGGAACAGCATCAGAATCTTTGTA

EST: gi|32858096|gb|CD997777.1|CD997777

EST:     GGAGATGACAACGTACCATTCATTTGTACCATGGACTGCCTCGGTGCAAA                         GGAGCTGGCCAAGGATTTTGTTGGTTCTGGAACAGCATCAG
genomic: GGAGATGACAACGTACCATTCATTTGTACCATGGACTGCCTCGGTGCAAAgtaggtttct ... tactatgcagGGAGCTGGCCAAGGATTTTGTTGTTTCTGGAACAGCATCAG

EST: gi|71438351|gb|DR819401.1|DR819401

EST:     GGAGATGACAACGTACCATTCATTTGTACCATGGACTGCCTCGGTGCAAA                         GGAGCTGGCCAAGGATTTTGTTGTTTCTGGAACAGCATCAGAATCTTTGTA
genomic: GGAGATGACAACGTACCATTCATTTGTACCATGGACTGCCTCGGTGCAAAgtaggtttct ... tactatgcagGGAGCTGGCCAAGGATTTTGTTGTTTCTGGAACAGCATCAGAATCTTTGTA

EST: gi|30088393|gb|CB886598.1|CB886598

EST:     GGAGATGACAACGTACCATTCATTTGTACCATGGACTGCCTCGGTGCAAA                         GGAGCTGGCCAAGGATTTTGTTGTTTCTGGAACAGCATCAGAATCTTTGTA
genomic: GGAGATGACAACGTACCATTCATTTGTACCATGGACTGCCTCGGTGCAAAgtaggtttct ... tactatgcagGGAGCTGGCCAAGGATTTTGTTGTTTCTGGAACAGCATCAGAATCTTTGTA

EST: gi|60355770|gb|DN222743.1|DN222743

EST:     GGAGATGACAACGTACCATTCATTTGTACCATGGACTGCCTCGGTGCAAA                         GGAGCTGGCCAAGGATTTTGTTGTTTCTGGAACAGCATCAGAATCTTTGTA
genomic: GGAGATGACAACGTACCATTCATTTGTACCATGGACTGCCTCGGTGCAAAgtaggtttct ... tactatgcagGGAGCTGGCCAAGGATTTTGTTGTTTCTGGAACAGCATCAGAATCTTTGTA

EST: gi|211320127|gb|FL100658.1|FL100658

EST:     GGAGATGACAACGTACCATTCATTTGTACCATGGACTGCCTCGGTGCAAA                         GGAGCTGGCCAAGGATTTTGTTGTTTCTGGAACAGCATCAGAATCTTTGTA
genomic: GGAGATGACAACGTACCATTCATTTGTACCATGGACTGCCTCGGTGCAAAgtaggtttct ... tactatgcagGGAGCTGGCCAAGGATTTTGTTGTTTCTGGAACAGCATCAGAATCTTTGTA

EST: gi|5819196|gb|AI987402.1|AI987402

EST:     GGAGATGNCAACGTACCATTCATTTGTACCATGGNCTGCCTCGGTGCAAA                         GGAGCTGGCCAAGGATTTTGTTGTTTCTGGAACAGCATCAGAATCTTTGTA
genomic: GGAGATGACAACGTACCATTCATTTGTACCATGGACTGCCTCGGTGCAAAgtaggtttct ... tactatgcagGGAGCTGGCCAAGGATTTTGTTGTTTCTGGAACAGCATCAGAATCTTTGTA

EST: gi|76284605|gb|DV024173.1|DV024173

EST:     GGAGATGACAACGTACCATTCATTTGTACCATGGACTGCCTCGGTGCAAA                         GGAGCTGGCCAAGGATTTTGTTGTTTCTGGAACAGCATCAGAATCTTTGTA
genomic: GGAGATGACAACGTACCATTCATTTGTACCATGGACTGCCTCGGTGCAAAgtaggtttct ... tactatgcagGGAGCTGGCCAAGGATTTTGTTGTTTCTGGAACAGCATCAGAATCTTTGTA

EST: gi|14243549|gb|BG841232.2|BG841232

EST:     GGAGATGACAACGTACCATTCATTTGTACCATGGACTGCCTCGGTGCAAA                         GGAGCTGGCCAAGGATTTTGTTGTTTCTGGAACAGCATCAGAATCTTTGTA
genomic: GGAGATGACAACGTACCATTCATTTGTACCATGGACTGCCTCGGTGCAAAgtaggtttct ... tactatgcagGGAGCTGGCCAAGGATTTTGTTGTTTCTGGAACAGCATCAGAATCTTTGTA

EST: gi|32802966|gb|CD955202.1|CD955202

EST:     GGAGATGACAACGTACCATTCACTTGTACCATGGACTGCCTCGGTGCAAA                         GGAGCTGGCCAAGGATTTTGTTGTTTCTGGAACAGCATAAAAATCTTTGTA
genomic: GGAGATGACAACGTACCATTCATTTGTACCATGGACTGCCTCGGTGCAAAgtaggtttct ... tactatgcagGGAGCTGGCCAAGGATTTTGTTGTTTCTGGAACAGCATCAGAATCTTTGTA

EST: gi|5895676|gb|AW036922.1|AW036922

EST:     GGAGATGACAACGTACCATTCATTTGTACCATGGACTGCCTCGGTGCAAA                         GGAGCTGGCCAAGGATTTTGTTGTTTCTGGAACAGCATCAGAATCTTTGTA
genomic: GGAGATGACAACGTACCATTCATTTGTACCATGGACTGCCTCGGTGCAAAgtaggtttct ... tactatgcagGGAGCTGGCCAAGGATTTTGTTGTTTCTGGAACAGCATCAGAATCTTTGTA

EST: gi|78091664|gb|DV520038.1|DV520038

EST:     GGAGATGACAACGTACCATTCATTTGTACCATGGACTGCCTCGGTGCAAA                         GGAGCTGGCCAAGGATTTTGTTGTTTCTGGAACAGCATCAGAATCTTTGTA
genomic: GGAGATGACAACGTACCATTCATTTGTACCATGGACTGCCTCGGTGCAAAgtaggtttct ... tactatgcagGGAGCTGGCCAAGGATTTTGTTGTTTCTGGAACAGCATCAGAATCTTTGTA

EST: gi|5713879|gb|AI943864.1|AI943864

EST:     GGAGATGACAACGTACCATTCATTTGTACCATGGACTGCCTCGGTGCAAA                         GGAGCTGGCCAAGGATTTTGTTGTTTTTGGAACAGCATCAGAATCTTTGTA
genomic: GGAGATGACAACGTACCATTCATTTGTACCATGGACTGCCTCGGTGCAAAgtaggtttct ... tactatgcagGGAGCTGGCCAAGGATTTTGTTGTTTCTGGAACAGCATCAGAATCTTTGTA

EST: gi|50337097|gb|CO532223.1|CO532223

EST:     GGAGATGACAACGTACCATTCATTTGTACCATGGACTGCCTCGGTGCAAA                         GGAGCTGGCCAAGGATTTTGTTGTTTCTGGAACAGCATCAGAATCTTTGTA
genomic: GGAGATGACAACGTACCATTCATTTGTACCATGGACTGCCTCGGTGCAAAgtaggtttct ... tactatgcagGGAGCTGGCCAAGGATTTTGTTGTTTCTGGAACAGCATCAGAATCTTTGTA

EST: gi|60337993|gb|DN204966.1|DN204966

EST:     AACGTACCATTCATTTGTGCCATGGACTGCCTCGGTGCAAA                         GGAGCTGGCCAAGGATTTTGTTGTTTCTGGAACAGCATCAGAATCTTTGTA
genomic: AACGTACCATTCATTTGTACCATGGACTGCCTCGGTGCAAAgtaggtttct ... tactatgcagGGAGCTGGCCAAGGATTTTGTTGTTTCTGGAACAGCATCAGAATCTTTGTA

EST: gi|37390704|gb|CF632585.1|CF632585

EST:     GGAGATGACAACGTACCATTCATTTGTACCATGGACTGCCTCGGTGCAAA                         GGAGCTGGCCAAGGATTTTGTTGTTTCTGGAACAGCATCAGAATCTTTGTA
genomic: GGAGATGACAACGTACCATTCATTTGTACCATGGACTGCCTCGGTGCAAAgtaggtttct ... tactatgcagGGAGCTGGCCAAGGATTTTGTTGTTTCTGGAACAGCATCAGAATCTTTGTA

EST: gi|18654593|gb|BM499398.1|BM499398

EST:     GGAGATGACAACGTACCATTCATTTGTACCATGGACTGCCTCGGTGCAAA                         GGAGCTGGCCAAGGATTTTGTTGTTTCTGGAACAGCATCAGAATCTTTGTA
genomic: GGAGATGACAACGTACCATTCATTTGTACCATGGACTGCCTCGGTGCAAAgtaggtttct ... tactatgcagGGAGCTGGCCAAGGATTTTGTTGTTTCTGGAACAGCATCAGAATCTTTGTA

EST: gi|60395156|gb|DN228025.1|DN228025

EST:     GGAGATGACAACGTACCATTCATTTGTACCATGGACTGCCTCGGTGCAAA                         GGAGCTGGCCAAGGATTTTGTTGTTTCTGGAACAGCATCAGAATCTTTGTA
genomic: GGAGATGACAACGTACCATTCATTTGTACCATGGACTGCCTCGGTGCAAAgtaggtttct ... tactatgcagGGAGCTGGCCAAGGATTTTGTTGTTTCTGGAACAGCATCAGAATCTTTGTA

EST: gi|6056973|gb|AW091378.1|AW091378

EST:     GGAGATG-CAACGTACCATTCATTTGTACCATGGACTGCCTCGGTGCAAA                         GGAGCTGGCCAAGGATTTTGTTGTTTCTGGAACAGCATCAGAATCTTTGTA
genomic: GGAGATGACAACGTACCATTCATTTGTACCATGGACTGCCTCGGTGCAAAgtaggtttct ... tactatgcagGGAGCTGGCCAAGGATTTTGTTGTTTCTGGAACAGCATCAGAATCTTTGTA

EST: gi|32805139|gb|CD957375.1|CD957375

EST:     GGAGATGACAACGTACCATTCATTTGTACCATGGACTGCCTCGGTGCAAA                         GGAGCTGGCCAAGGATTTTGTTGTTTCTGGAGCAGCATCAGAATCTTTGTA
genomic: GGAGATGACAACGTACCATTCATTTGTACCATGGACTGCCTCGGTGCAAAgtaggtttct ... tactatgcagGGAGCTGGCCAAGGATTTTGTTGTTTCTGGAACAGCATCAGAATCTTTGTA

EST: gi|78086605|gb|DV514998.1|DV514998

EST:     GGAGATGACAACGTACCATTCATTTGTACCATGGACTGCCTCGGTGCAAA                         GGAGCTGGCCAAGGATTTTGTTGTTTCTGGAACAGCATCAGAATCTTTGTA
genomic: GGAGATGACAACGTACCATTCATTTGTACCATGGACTGCCTCGGTGCAAAgtaggtttct ... tactatgcagGGAGCTGGCCAAGGATTTTGTTGTTTCTGGAACAGCATCAGAATCTTTGTA

EST: gi|89760015|gb|DY688633.1|DY688633

EST:     GGAGATGACAACGTACCATTCATTTGTACCATGGACTGCCTCGGTGCAAA                         GGAGCTGGCCAAGGATTTTGTTGTTTTTGGAACAGCATCAGAATCTTTGTA
genomic: GGAGATGACAACGTACCATTCATTTGTACCATGGACTGCCTCGGTGCAAAgtaggtttct ... tactatgcagGGAGCTGGCCAAGGATTTTGTTGTTTCTGGAACAGCATCAGAATCTTTGTA

EST: gi|76923708|gb|DV169619.1|DV169619

EST:     GGAGATGACAACGTACCATTCATTTGTACCATGGACTGCCTCGGTGCAAA                         GGAGCTGGCCAAGGATTTTGTTGTTTCTGGAACAGCATCAGAATCTTTGTA
genomic: GGAGATGACAACGTACCATTCATTTGTACCATGGACTGCCTCGGTGCAAAgtaggtttct ... tactatgcagGGAGCTGGCCAAGGATTTTGTTGTTTCTGGAACAGCATCAGAATCTTTGTA

EST: gi|78106723|gb|DV525141.1|DV525141

EST:     GGAGATGACAACGTACCATTCATTTGTACCATGGACTGCCTCGGTGCAAA                         GGAGCTGGCCAAGGATTTTGTTGTTTCTGGAACAGCATCAGAATCTTTGTA
genomic: GGAGATGACAACGTACCATTCATTTGTACCATGGACTGCCTCGGTGCAAAgtaggtttct ... tactatgcagGGAGCTGGCCAAGGATTTTGTTGTTTCTGGAACAGCATCAGAATCTTTGTA

EST: gi|40334026|gb|CK368096.1|CK368096

EST:     GGAGATGACAACGTACCATTCATTTGTACCATGGACTGCCTCGGTGCAAA                         GGAGCTGGCCAAGGATTTTGTTGTTTCTGGAACAGCATCAGAATCTTTGTA
genomic: GGAGATGACAACGTACCATTCATTTGTACCATGGACTGCCTCGGTGCAAAgtaggtttct ... tactatgcagGGAGCTGGCCAAGGATTTTGTTGTTTCTGGAACAGCATCAGAATCTTTGTA

EST: gi|33101464|gb|CF061424.1|CF061424

EST:     GTACCATGGACTGCCTCGGTGCAAA                         GGAGCTGGCCAAGGATTTTGTCGTTTCTGGAACAGCATCAGAATCTTTGTA
genomic: GTACCATGGACTGCCTCGGTGCAAAgtaggtttct ... tactatgcagGGAGCTGGCCAAGGATTTTGTTGTTTCTGGAACAGCATCAGAATCTTTGTA

EST: gi|31361651|gb|CD446008.1|CD446008

EST:     GGAGATGACAACGTACCATTCATTTGTACCATGGACTGCCTCGGTGCAAA                         GGAGCTGGCCAAGGATTTTGTTGTTTCTGGAACAGCATCAGAATCTTTGTA
genomic: GGAGATGACAACGTACCATTCATTTGTACCATGGACTGCCTCGGTGCAAAgtaggtttct ... tactatgcagGGAGCTGGCCAAGGATTTTGTTGTTTCTGGAACAGCATCAGAATCTTTGTA

EST: gi|32789254|gb|CD941490.1|CD941490

EST:     GGAGATGACAACGTACCATTCATTTGTACCATGGACTGCCTCGGTGCAAA                         GGAGCTGGCCAAGGATTTTGTTGTTTCTGGAACAGCATCAGAATCTTTGTA
genomic: GGAGATGACAACGTACCATTCATTTGTACCATGGACTGCCTCGGTGCAAAgtaggtttct ... tactatgcagGGAGCTGGCCAAGGATTTTGTTGTTTCTGGAACAGCATCAGAATCTTTGTA

EST: gi|71774247|gb|DR972125.1|DR972125

EST:     GGAGATGACAACGTACCATTCATTTGTACCATGGACTGCCTCGGTGCAAA                         GGAGCTGGCCAAGGATTTTGTTGTTTCTGGAACAGCATCAGAATCTTTGTA
genomic: GGAGATGACAACGTACCATTCATTTGTACCATGGACTGCCTCGGTGCAAAgtaggtttct ... tactatgcagGGAGCTGGCCAAGGATTTTGTTGTTTCTGGAACAGCATCAGAATCTTTGTA

EST: gi|60352145|gb|DN219118.1|DN219118

EST:     GGAGATGACAACGTACCATTCATTTGTACCATGGACTGCCTCGGTGCAAA                         GGAGCTGGCCAAGGATTTTGTTGTTTCTGGAACAGCATCAGAATCTTTGTA
genomic: GGAGATGACAACGTACCATTCATTTGTACCATGGACTGCCTCGGTGCAAAgtaggtttct ... tactatgcagGGAGCTGGCCAAGGATTTTGTTGTTTCTGGAACAGCATCAGAATCTTTGTA

EST: gi|5791311|gb|AI978103.1|AI978103

EST:     AGATGACAACGTACCATTCATTTGTACCATGGNCTGCCTCGGTGCAAA                         GGAGCTGGCCAAGGATTTTGTTGTTTCTGGAACAGCATCAGAATCTTTGTA
genomic: AGATGACAACGTACCATTCATTTGTACCATGGACTGCCTCGGTGCAAAgtaggtttct ... tactatgcagGGAGCTGGCCAAGGATTTTGTTGTTTCTGGAACAGCATCAGAATCTTTGTA

EST: gi|116827042|gb|EC870897.1|EC870897

EST:     GGAGATGACAACGTACCATTCATTTGTACCATGGACTGCCTCGGTGCAAA                         GGAGCTGGCCAAGGATTTTGTTGTTTCTGGAACAGCATCAGAATCTTTGTA
genomic: GGAGATGACAACGTACCATTCATTTGTACCATGGACTGCCTCGGTGCAAAgtaggtttct ... tactatgcagGGAGCTGGCCAAGGATTTTGTTGTTTCTGGAACAGCATCAGAATCTTTGTA

EST: gi|116826373|gb|EC870155.1|EC870155

EST:     TCATTTGTA-CATGGACTGCCTCGGTGCAAA                         GGAGCTGGCCAA-GA--TAGTTGTTTCTGGAACAGCATCAGAATCTTTGTA
genomic: TCATTTGTACCATGGACTGCCTCGGTGCAAAgtaggtttct ... tactatgcagGGAGCTGGCCAAGGATTTTGTTGTTTCTGGAACAGCATCAGAATCTTTGTA

EST: gi|211275645|gb|FL309928.1|FL309928

EST:     GGAGATGACAACGTACCATTCATTTGTACCATGGACTGCCTCGGTGCAAA                         GGAGCTGGCCAAGGATTTTGTTGTTTCTGGAACAGCATCAGAATCTTTGTA
genomic: GGAGATGACAACGTACCATTCATTTGTACCATGGACTGCCTCGGTGCAAAgtaggtttct ... tactatgcagGGAGCTGGCCAAGGATTTTGTTGTTTCTGGAACAGCATCAGAATCTTTGTA

RNA-Seq data

ATGC Supported by RNA-Seq exonic block that spans over the splice site

atgs Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.

Found data for 4 RNA-Seq libraries.

Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 352

ATTTGGGCCATATTTCTGCCAGCCAGTCATTGCTGGACTTGGAGATGACAACGTACCATTCATTTGTACCATGGACTGCCTCGGTGCAAAgtaggtttct ... tactatgcagGGAGCTGGCCAAGGATTTTGTTGTTTCTGGAACAGCATCAGAATCTTTGTATGGTGCTTGTGAATCCATGTACAAGCCGGACATG

Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 341

Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 436

Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 375

Putative cis-regulatory sequences

atgc	intron	ATGC	exonic elements by Pertea et al.
ATGC	exon	atgc	putative intronic elements
		ATGC	putative exonic elements identified for retained introns

        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ATTTGGGCCATATTTCTGCCAGCCAGTCATTGCTGGACTTGGAGATGACAACGTACCATTCATTTGTACCATGGACTGCCTCGGTGCAAAgtaggtttctgtttatgttgttttcttcttgaataaatgcttggtttgttttctgcttgagattcttgcgttttagatcctagtgaagtcgatctttttg

- - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - -  GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CATGGA