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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTGGAAGGCGGGCGTGTCGACCGAAGTGGTAAGCCTGTACGAGGGCGACGAGAAGGCGGATGCCGGTGGCAGGAAGCTTCTGCACACGCAAGGGTTCAGgtaggtccagctttcactgtccttccctcgatgtatgcacgcaccaatcttgactcgaacctgctgctgctggtgcag

Basic information

species Zea mays
transcript GRMZM2G044851_T02
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G044851_T01 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os02g46460.2 (Oryza sativa), 5'ss of exon 3
ACTGGAAGGCGGGCGTGTCGACCGAAGTGGTAAGCCTGTACGAGGGCGACGAGAAGGCGGATGCCGGTGGCAGGAAGCTTCTGCACACGCAAGGGTTCAGgtaggtccagctttcactgtccttccctcgatgtatgcacgcaccaatcttgactcgaacctgctgctgctggtgcag
|||||||||| |||| |||| | |  |  || |  || |||||| ||||||||||||||||| ||||||| |||||||| ||||||||| |||| ||||||||        | |   | |     |   ||  |   ||||||   |    |    ||||  ||      |  |||||
ACTGGAAGGCCGGCGAGTCGCCGGGCGCCGTGACACTCTACGAGAGCGACGAGAAGGCGGATTCCGGTGGGAGGAAGCTCCTGCACACGGAAGGTTTCAGgtaaagtgttgtgtggttttgtgagctgtgaactgatcacgcatgcac---gcactgaactcgccatg--tattgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|74237214|gb|DT645128.1|DT645128
EST:     GAGAAGGCGGATGCCGGTGGCAGGAAGCTTCTGCACACGCAAGGGTTCAG                         TTTCTTGGACCGCGCGGCGCACGCGGACACTGACTCCAAGCTCGGCGCGCG
genomic: GAGAAGGCGGATGCCGGTGGCAGGAAGCTTCTGCACACGCAAGGGTTCAGgtaggtccag ... gctggtgcagTTTCTTGGACCGCGCGGCGCACGCGGACACTGACTCCAAGCTCGGCGCGCG
EST: gi|74245992|gb|DT653906.1|DT653906
EST:     GAGAAGGCGGATGCCGGTGGCAGGAAGCTTCTGCACACGCAAGGGTTCAG                         TTTCTTGGACCGCGCGGCGCACGCGGACACTGACTCCAAGCTCGGCGCGCG
genomic: GAGAAGGCGGATGCCGGTGGCAGGAAGCTTCTGCACACGCAAGGGTTCAGgtaggtccag ... gctggtgcagTTTCTTGGACCGCGCGGCGCACGCGGACACTGACTCCAAGCTCGGCGCGCG