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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTTCGAGTGGAAACCTGGGAGGATAACTCATGGCGTAAAATGAAGTTCAGGATCTTTGTTGCAAGGGATGTTCTACTCGTGTTTCTTGCTGTACAGCTTgtaagtcttttaacatttcaaagcacttaagttacacatgtgcttcttttacaaaacaaatctcatagctttacttttagagatgcttacattatgattc...

Basic information

species Zea mays
transcript GRMZM2G044569_T01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G044569_T01 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os08g29590.1 (Oryza sativa), 5'ss of exon 4
TCTTCGAGTGGAAACCTGGGAGGATAACTCATGGCGTAAAATGAAGTTCAGGATCTTTGTTGCAAGGGATGTTCTACTCGTGTTTCTTGCTGTACAGCTTgtaagtcttttaacatttcaaagcacttaagttacacatgtgcttc---ttttacaaa--acaaatctcatagctttacttttagagatgcttacattatgattc-
||| ||||||||||| |||||||| || ||||||||||||||||||||| |||| ||||||||||| |||||| | || ||||||||||||||||| ||||||||  ||  |||| ||  |  |   ||  || || || || ||    ||  | |||  |||| |    |  |   ||| ||  |||     | ||| | | || 
TCTCCGAGTGGAAACTTGGGAGGACAATTCATGGCGTAAAATGAAGTTCCGGATATTTGTTGCAAGAGATGTTATCCTTGTGTTTCTTGCTGTACAACTTgtaagcatt--aacactttgacac---tacttttcatatttgttttcagttccaaaaaccacaagtactttgacaaaactattgcagaattacatatt-taagtca
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|47962587|gb|CN845296.1|CN845296
EST:     GGGTCTTTGTTGCAAGGGATGTTCTACTCGTATTTCTTGCTGTACAGCTT                         ACTATTGCTATCATCGGTGCGATTGCATACTTTTTAGACAGGGGTGGAAGT
genomic: GGATCTTTGTTGCAAGGGATGTTCTACTCGTGTTTCTTGCTGTACAGCTTgtaagtcttt ... attgtcacagACTATTGCTATCATCGGTGCGATTGCATACTTTTTAGACAGGGATGGAAGT
EST: gi|78085525|gb|DV513918.1|DV513918
EST:     GGATCTTTGTTGCAAGGGATGTTCTACTCGTGTTTCTTGCTGTACAGCTT                         ACTATTGCTATCATCGGTGCGATTGCATACTTTTTAGACAGGGATGGAAGT
genomic: GGATCTTTGTTGCAAGGGATGTTCTACTCGTGTTTCTTGCTGTACAGCTTgtaagtcttt ... attgtcacagACTATTGCTATCATCGGTGCGATTGCATACTTTTTAGACAGGGATGGAAGT
EST: gi|71766873|gb|DR964810.1|DR964810
EST:     GGATCTTTGTTGCAAGGGATGTTCTACTCGTGTTTCTTGCTGTACAGCTT                         ACTATTGCTATCATCGGTGCGATTGCATACTTTTTAGACAGGGATGGAAGT
genomic: GGATCTTTGTTGCAAGGGATGTTCTACTCGTGTTTCTTGCTGTACAGCTTgtaagtcttt ... attgtcacagACTATTGCTATCATCGGTGCGATTGCATACTTTTTAGACAGGGATGGAAGT
EST: gi|71764260|gb|DR962197.1|DR962197
EST:     GGATCTTTGTTGCAAGGGATGTTCTACTCGTGTTTCTTGCTGTACAGCTT                         ACTATTGCTATCATCGGTGCGATTGCATACTTTTTAGACAGGGATGGAAGT
genomic: GGATCTTTGTTGCAAGGGATGTTCTACTCGTGTTTCTTGCTGTACAGCTTgtaagtcttt ... attgtcacagACTATTGCTATCATCGGTGCGATTGCATACTTTTTAGACAGGGATGGAAGT
EST: gi|89253176|gb|DY624962.1|DY624962
EST:     GGATCTTTGTTGCTAGGGATGTTCTACTCGTGTTTCTTGCTGTACAGCTT                         ACTATTGCTATCATCGGTGC
genomic: GGATCTTTGTTGCAAGGGATGTTCTACTCGTGTTTCTTGCTGTACAGCTTgtaagtcttt ... attgtcacagACTATTGCTATCATCGGTGC
EST: gi|71449470|gb|DR830520.1|DR830520
EST:     GGATCTTTGTTGCAAGGGATGTTCTACTCGTGTTTCTTGCTGTACAGCTT                         ACTATTGCTATCATCGGTGCGATTGCATACTTTTTAGACAGGGATGGAAGT
genomic: GGATCTTTGTTGCAAGGGATGTTCTACTCGTGTTTCTTGCTGTACAGCTTgtaagtcttt ... attgtcacagACTATTGCTATCATCGGTGCGATTGCATACTTTTTAGACAGGGATGGAAGT
EST: gi|78075719|gb|DV504153.1|DV504153
EST:     GGATCTTTGTTGCAAGGGATGTTCTACTCGTGTTTCTTGCTGTACAGCTT                         ACTATTGCTATCATCGGTGCGATTGCATACTTTTTAGACAGGGATGGAAGT
genomic: GGATCTTTGTTGCAAGGGATGTTCTACTCGTGTTTCTTGCTGTACAGCTTgtaagtcttt ... attgtcacagACTATTGCTATCATCGGTGCGATTGCATACTTTTTAGACAGGGATGGAAGT
EST: gi|78085425|gb|DV513818.1|DV513818
EST:     GGATCTTTGTTGCAAGGGATGTTCTACTCGTGTTTCTTGCTGTACAGCTT                         ACTATTGCTATCATCGGTGCGATTGCATACTTTTTAGACAGGGATGGAAGT
genomic: GGATCTTTGTTGCAAGGGATGTTCTACTCGTGTTTCTTGCTGTACAGCTTgtaagtcttt ... attgtcacagACTATTGCTATCATCGGTGCGATTGCATACTTTTTAGACAGGGATGGAAGT
EST: gi|74242907|gb|DT650821.1|DT650821
EST:     GGATCTTTGTTGCAAGGGATGTTCTACTCGTGTTTCTTGCTGTACAGCTT                         ACTATTGCTATCATCGGTGCGATTGCATACTTTTTAGACAGGGATGGAAGT
genomic: GGATCTTTGTTGCAAGGGATGTTCTACTCGTGTTTCTTGCTGTACAGCTTgtaagtcttt ... attgtcacagACTATTGCTATCATCGGTGCGATTGCATACTTTTTAGACAGGGATGGAAGT
EST: gi|91875640|gb|EB405597.1|EB405597
EST:     GGATCTTTGTTGCAAGGGATGTTCTACTCGTGTTTCTTGCTGTACAGCTT                         ACTATTGCTATCATCGGTGCGATTGCATACTTTTTAGACAGGGATGGAAGT
genomic: GGATCTTTGTTGCAAGGGATGTTCTACTCGTGTTTCTTGCTGTACAGCTTgtaagtcttt ... attgtcacagACTATTGCTATCATCGGTGCGATTGCATACTTTTTAGACAGGGATGGAAGT
EST: gi|149051784|gb|EE155909.2|EE155909
EST:     GGATCTTTGTTGCAAGGGATGTTCTACTCGTGTTTCTTGCTGTACAGCTT                         ACTATTGCTATCA
genomic: GGATCTTTGTTGCAAGGGATGTTCTACTCGTGTTTCTTGCTGTACAGCTTgtaagtcttt ... attgtcacagACTATTGCTATCA
EST: gi|76287272|gb|DV026840.1|DV026840
EST:     GGATCTTTGTTGCAAGGGATGTTCTACTCGTGTTTCTTGCTGTACAGCTT                         ACTATTGCTATCATCGGTGCGATTGCATACTTTTTAGACAGGGATGGAAGT
genomic: GGATCTTTGTTGCAAGGGATGTTCTACTCGTGTTTCTTGCTGTACAGCTTgtaagtcttt ... attgtcacagACTATTGCTATCATCGGTGCGATTGCATACTTTTTAGACAGGGATGGAAGT
EST: gi|211220736|gb|FL455232.1|FL455232
EST:     GGATCTTTGTTGCAAGGGATGTTCTACTCGTATTTCTTGCTGTACAGCTT                         ACTATTGCTATCATCGGTGCGATTGCATACTTTTTAGACMGGGATGGAAGT
genomic: GGATCTTTGTTGCAAGGGATGTTCTACTCGTGTTTCTTGCTGTACAGCTTgtaagtcttt ... attgtcacagACTATTGCTATCATCGGTGCGATTGCATACTTTTTAGACAGGGATGGAAGT
EST: gi|76287271|gb|DV026839.1|DV026839
EST:     GATCTTTG-TGCCAAGGGATGTTCTACTCGTGTTTCTTGCTGTACAGCTT                         ACTATTGCTATCATCGGTGCGATTGCATACTTTTTAGACAGGGATGGAAGT
genomic: GATCTTTGTTG-CAAGGGATGTTCTACTCGTGTTTCTTGCTGTACAGCTTgtaagtcttt ... attgtcacagACTATTGCTATCATCGGTGCGATTGCATACTTTTTAGACAGGGATGGAAGT
EST: gi|60350312|gb|DN217285.1|DN217285
EST:     GGATCTTTGTTGCAAGGGATGTTCTACTCGTGTTTCTTGCTGTACAGCTT                         ACTATTGCTATCATCGGTGCGATTGCATACTTTTTAGACAGGGATGGAAGT
genomic: GGATCTTTGTTGCAAGGGATGTTCTACTCGTGTTTCTTGCTGTACAGCTTgtaagtcttt ... attgtcacagACTATTGCTATCATCGGTGCGATTGCATACTTTTTAGACAGGGATGGAAGT
EST: gi|67025393|gb|CO454142.1|CO454142
EST:     GGATCTTTGTTGCAAGGGATGTTCTACTCGTGTTTCTTGCTGTACAGCTT                         ACTATTGCTATCATCGGTGCGATTGCATACTTTTTAGACAGGGATGGAAGT
genomic: GGATCTTTGTTGCAAGGGATGTTCTACTCGTGTTTCTTGCTGTACAGCTTgtaagtcttt ... attgtcacagACTATTGCTATCATCGGTGCGATTGCATACTTTTTAGACAGGGATGGAAGT
EST: gi|211122360|gb|FL034211.1|FL034211
EST:     GGATCTTTGTTGCAAGGGATGTTCTACTCGTGTTTCTTGCTGTACAGCTT                         ACTATTGCTATCATCGGTGCGATTGCATACTTTTTAGACAGGGATGGAAGT
genomic: GGATCTTTGTTGCAAGGGATGTTCTACTCGTGTTTCTTGCTGTACAGCTTgtaagtcttt ... attgtcacagACTATTGCTATCATCGGTGCGATTGCATACTTTTTAGACAGGGATGGAAGT