ERISdb: a Database of Plant Splice Sites

General
Orthologs
EST
RNA-Seq

Sequence

atgc intronic sequence ATGC exonic sequence

TGCTTTTATCACTGTTCCTTCTATTCAAGTTTCTCTCAAAAGATTTGGTCAACGCTGTGCTCACTGCCTACTTTTTCATTCTAGGCATTGTTGCTCTCTCgtaagtccattttttctcggaacgtcttttgcagacatgttaagctgtttatgtgctgtatttatgaggccgttcttatgcag

Basic information

species	Zea mays
transcript	GRMZM2G044348_T04
intron #	4
splice site	5'
intron type	U2

Orthologous splice sites

atgc intronic sequence ATGC exonic sequence

upper sequence: GRMZM2G044348_T04 (Zea mays), 5'ss of exon 4
lower sequence: Vv06s0009g03520.t01 (Vitis vinifera), 5'ss of exon 4

TGCTTTTATCACTGTTCCTTCTATTCAAGTTTCTCTCAAAAGATTTGGTCAACGCTGTGCTCACTGCCTACTTTTTCATTCTAGGCATTGTTGCTCTCTCgtaagtccattttttctcggaacgtcttttgcagacatgttaagctgtttatgtgctgtatttatgaggccgttcttatgcag-------------------------------------------
|||| |||||||| |||||||| ||||||||||| |||||||| ||||| || ||||| || ||   |||||| ||  | || || ||  | ||||| ||||| || |      | || | | |  |  |||    ||| | |    || || |  | |||||| ||    ||| | |||  |                                           
TGCTGTTATCACTATTCCTTCTCTTCAAGTTTCTATCAAAAGACTTGGTTAATGCTGTACTGACATGCTACTTCTTTGTGCTTGGGATCATCGCTCTTTCgtatgttc------tttccgtatggatcatgctactatgcttaatatttgatataat-tattta-gaaatagtt-tcatgtggtttggttcattatctcacattatctttcttctattttctgtag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments

ATGC    EST sequence
ATGC    genomic sequence (exon)
ATGC    genomic sequence (truncated intron)

EST: gi|149012865|gb|EE042709.2|EE042709

EST:     AACGCTGTGCTCACTGCCTACTTTTTCATTCTAGGCATTGTTGCTCTCTC                         CGCAACACTGCTTCCTTCTATAAAACGTTTTCTTCCAAAAGAGTGGAATGA
genomic: AACGCTGTGCTCACTGCCTACTTTTTCATTCTAGGCATTGTTGCTCTCTCgtaagtccat ... tcttatgcagCGCAACACTGCTTCCTTCTATAAAACGTTTTCTTCCAAAAGAGTGGAATGA

EST: gi|211345313|gb|FL467149.1|FL467149

EST:     AACGCTGTGCTCACTGCCTACTTTTTCATTCTAGGCATTGTTGCTCTCTC                         CGCAACACTGCTTCCTTCTATAAAACGTTTTCTTCCAAAAGAGTGGAATGA
genomic: AACGCTGTGCTCACTGCCTACTTTTTCATTCTAGGCATTGTTGCTCTCTCgtaagtccat ... tcttatgcagCGCAACACTGCTTCCTTCTATAAAACGTTTTCTTCCAAAAGAGTGGAATGA

EST: gi|71435689|gb|DR816739.1|DR816739

EST:     AACGCTGTGCTCACTGCCTACTTTTTCATTCTAGGCATTGTTGCTCTCTC                         CGCAACACTGCTTCCTTCTATAAAACGTTTTCTTCCAAAAGAGTGGAATGA
genomic: AACGCTGTGCTCACTGCCTACTTTTTCATTCTAGGCATTGTTGCTCTCTCgtaagtccat ... tcttatgcagCGCAACACTGCTTCCTTCTATAAAACGTTTTCTTCCAAAAGAGTGGAATGA

EST: gi|148948442|gb|EC893960.2|EC893960

EST:     AACGCTGTGCTCACTGCCTACTTTTTCATTCTAGGCATTGTTGCTCTCTC                         CGCAACACTGCTTCCTTCTATAAAACGTTTTCTTCCAAAAGAGTGGAATGA
genomic: AACGCTGTGCTCACTGCCTACTTTTTCATTCTAGGCATTGTTGCTCTCTCgtaagtccat ... tcttatgcagCGCAACACTGCTTCCTTCTATAAAACGTTTTCTTCCAAAAGAGTGGAATGA

EST: gi|149027788|gb|EE286084.2|EE286084

EST:     AACGCTGTGCTCACTGCCTACTTTTTCATTCTAGGCATTGTTGCTCTCTC                         CGCAACACTGCTTCCTTCTATAAAACGTTTTCTTCCAAAAGAGTGGAATGA
genomic: AACGCTGTGCTCACTGCCTACTTTTTCATTCTAGGCATTGTTGCTCTCTCgtaagtccat ... tcttatgcagCGCAACACTGCTTCCTTCTATAAAACGTTTTCTTCCAAAAGAGTGGAATGA

EST: gi|148991460|gb|EE032969.2|EE032969

EST:     AACGCTGTGCTCACTGCCTACTTTTTCATTCTAGGCATTGTTGCTCTCTC                         CGCAACACTGCTTCCTTCTATAAAACGTTTTCTTCCCAAAGAGTGGAATGA
genomic: AACGCTGTGCTCACTGCCTACTTTTTCATTCTAGGCATTGTTGCTCTCTCgtaagtccat ... tcttatgcagCGCAACACTGCTTCCTTCTATAAAACGTTTTCTTCCAAAAGAGTGGAATGA

EST: gi|148948218|gb|EC893734.2|EC893734

EST:     AACGCTGTGCTCACTGCCTACTTTTTCATTCTAGGCATTGTTGCTCTCTC                         CGCAACACTGCTTCCTTCTATAAAACGTTTTCTTCCAAAAGAGTGGAATGA
genomic: AACGCTGTGCTCACTGCCTACTTTTTCATTCTAGGCATTGTTGCTCTCTCgtaagtccat ... tcttatgcagCGCAACACTGCTTCCTTCTATAAAACGTTTTCTTCCAAAAGAGTGGAATGA

EST: gi|32921110|gb|CF025922.1|CF025922

EST:     AACGCTGTGCTCACTGCCTACTTTTTCATTCTAGGCATTGTTGCTCTCTC                         CGCAACACTGCTTCCTTCTATAAAACGTTTTCTTCCAAAAGAGTGGAATGA
genomic: AACGCTGTGCTCACTGCCTACTTTTTCATTCTAGGCATTGTTGCTCTCTCgtaagtccat ... tcttatgcagCGCAACACTGCTTCCTTCTATAAAACGTTTTCTTCCAAAAGAGTGGAATGA

EST: gi|91875915|gb|EB405872.1|EB405872

EST:     AACGCTGTGCTCACTGCCTACTTTTTCATTCTAGGCATTGTTGCTCTCTC                         CGCAACACTGCTTCCTTCTATAAAACGTTTTCTTCCAAAAGAGTGGAATGA
genomic: AACGCTGTGCTCACTGCCTACTTTTTCATTCTAGGCATTGTTGCTCTCTCgtaagtccat ... tcttatgcagCGCAACACTGCTTCCTTCTATAAAACGTTTTCTTCCAAAAGAGTGGAATGA

EST: gi|149097124|gb|EE182936.2|EE182936

EST:     AACGCTGTGCTCACTGCCTACTTTTTCATTCTAGGCATTGTTGCTCTCTC                         CGCAACACTGCTTCCTTCTATAAAACGTTTTCTTCCAAAAGAGTGGAATGA
genomic: AACGCTGTGCTCACTGCCTACTTTTTCATTCTAGGCATTGTTGCTCTCTCgtaagtccat ... tcttatgcagCGCAACACTGCTTCCTTCTATAAAACGTTTTCTTCCAAAAGAGTGGAATGA

EST: gi|17930295|gb|BM267255.1|BM267255

EST:     AACGCTGTGCTCACTGCCTACTTTTTCATTCTAGGCATTGTTGCTCTCTC                         CGCAACACTGCTTCCTTCTATAAAACGTTTTCTTCCAAAAGAGTGGAATGA
genomic: AACGCTGTGCTCACTGCCTACTTTTTCATTCTAGGCATTGTTGCTCTCTCgtaagtccat ... tcttatgcagCGCAACACTGCTTCCTTCTATAAAACGTTTTCTTCCAAAAGAGTGGAATGA

EST: gi|149001048|gb|EE038297.2|EE038297

EST:     AACGCTGTGCTCACTGCCTACTTTTTCATTCTAGGCATTGTTGCTCTCTC                         CGCAACACTGCTTCCTTCTATAAAACGTTTTCTTCCAAAAGAGTGGAATGA
genomic: AACGCTGTGCTCACTGCCTACTTTTTCATTCTAGGCATTGTTGCTCTCTCgtaagtccat ... tcttatgcagCGCAACACTGCTTCCTTCTATAAAACGTTTTCTTCCAAAAGAGTGGAATGA

EST: gi|149100817|gb|EE186911.2|EE186911

EST:     AACGCTGTGCTCACTGCCTACTTTTTCATTCTAGGCATTGTTGCTCTCTC                         CGCAACACTGCTTCCTTCTATAAAACGTTTTCTTCCAAAAGAGTGGAATGA
genomic: AACGCTGTGCTCACTGCCTACTTTTTCATTCTAGGCATTGTTGCTCTCTCgtaagtccat ... tcttatgcagCGCAACACTGCTTCCTTCTATAAAACGTTTTCTTCCAAAAGAGTGGAATGA

EST: gi|78088713|gb|DV517106.1|DV517106

EST:     AACGCTGTGCTCACTGCCTACTTTTTCATTCTAGGCATTGTTGCTCTCTC                         CGCAACACTGCTTCCTTCTATAAAACGTTTTCTTCCAAAAGAGTGGAATGA
genomic: AACGCTGTGCTCACTGCCTACTTTTTCATTCTAGGCATTGTTGCTCTCTCgtaagtccat ... tcttatgcagCGCAACACTGCTTCCTTCTATAAAACGTTTTCTTCCAAAAGAGTGGAATGA

EST: gi|17930284|gb|BM267244.1|BM267244

EST:     AACGCTGTGCTCACTGCCTACTTTTTCATTCTAGGCATTGTTGCTCTCTC                         CGCAACACTGCTTCCTTCTATAAAACGTTTTCTTCCAAAAGAGTGGAATGA
genomic: AACGCTGTGCTCACTGCCTACTTTTTCATTCTAGGCATTGTTGCTCTCTCgtaagtccat ... tcttatgcagCGCAACACTGCTTCCTTCTATAAAACGTTTTCTTCCAAAAGAGTGGAATGA

EST: gi|149110465|gb|EE190430.2|EE190430

EST:     AACGCTGTGCTCACTGCCTACTTTTTCATTCTAGGCATTGTTGCTCTCTC                         CGCAACACTGCTTCCTTCTATAAAACGTTTTCTTCCAAAAGAGT
genomic: AACGCTGTGCTCACTGCCTACTTTTTCATTCTAGGCATTGTTGCTCTCTCgtaagtccat ... tcttatgcagCGCAACACTGCTTCCTTCTATAAAACGTTTTCTTCCAAAAGAGT

EST: gi|149067509|gb|EE157716.2|EE157716

EST:     AACGCTGTGCTCACTGCCTACTTTTTCATTCTAGGCATTGTTGCTCTCTC                         CGCAACACTGCTTCCTTCTATAAAACGTTTTCTTCCAAAAGAGTGGAATGA
genomic: AACGCTGTGCTCACTGCCTACTTTTTCATTCTAGGCATTGTTGCTCTCTCgtaagtccat ... tcttatgcagCGCAACACTGCTTCCTTCTATAAAACGTTTTCTTCCAAAAGAGTGGAATGA

EST: gi|148976595|gb|EE025942.2|EE025942

EST:     AACGCTGTGCTCACTGCCTACTTTTTCATTCTAGGCATTGTTGCTCTCTC                         CGCAACACTGCTTCCTTCTATAAAACGTTTTCTTCCAAAAGAGTGGAATGA
genomic: AACGCTGTGCTCACTGCCTACTTTTTCATTCTAGGCATTGTTGCTCTCTCgtaagtccat ... tcttatgcagCGCAACACTGCTTCCTTCTATAAAACGTTTTCTTCCAAAAGAGTGGAATGA

EST: gi|32921020|gb|CF025832.1|CF025832

EST:     AACGCTGTGCTCACTGCCTACTTTTTCATTCTAGGCATTGTTGCTCTCTC                         CGCAACACTGCTTCCTTCTATAAAACGTTTTCTTCCAAAAGAGTGGAATGA
genomic: AACGCTGTGCTCACTGCCTACTTTTTCATTCTAGGCATTGTTGCTCTCTCgtaagtccat ... tcttatgcagCGCAACACTGCTTCCTTCTATAAAACGTTTTCTTCCAAAAGAGTGGAATGA

EST: gi|31360319|gb|CD444676.1|CD444676

EST:     AACGCTGTGCTCACTGCCTACTTTTTCATTCTAGGCATTGTTGCTCTCTC                         CGCAACACTGCTTCCTTCTATAAAACGTTTTCTTCCAAAAGAGTGGAATGA
genomic: AACGCTGTGCTCACTGCCTACTTTTTCATTCTAGGCATTGTTGCTCTCTCgtaagtccat ... tcttatgcagCGCAACACTGCTTCCTTCTATAAAACGTTTTCTTCCAAAAGAGTGGAATGA

EST: gi|148943973|gb|EC889054.2|EC889054

EST:     AACGCTGTGCTCACTGCCTACTTTTTCATTCTAGGCATTGTTGCTCTCTC                         CGCAACACTGCTTCCTTCTATAAAACGTTTTCTTCCAAAAGAGTGGAATGA
genomic: AACGCTGTGCTCACTGCCTACTTTTTCATTCTAGGCATTGTTGCTCTCTCgtaagtccat ... tcttatgcagCGCAACACTGCTTCCTTCTATAAAACGTTTTCTTCCAAAAGAGTGGAATGA

EST: gi|211267467|gb|FK986909.1|FK986909

EST:     AACGCTGTGCTCACTGCCTACTTTTTCATTCTAGGCATTGTTGCTCTCTC                         CGCAACACTGCTTCCTTCTATAAAACGTTTTCTTTCAAAAGAGTGGAATGA
genomic: AACGCTGTGCTCACTGCCTACTTTTTCATTCTAGGCATTGTTGCTCTCTCgtaagtccat ... tcttatgcagCGCAACACTGCTTCCTTCTATAAAACGTTTTCTTCCAAAAGAGTGGAATGA

EST: gi|148930101|gb|EC872413.2|EC872413

EST:     AACGCTGTGCTCACTGCCTACTTTTTCATTCTAGGCATTGTTGCTCTCTC                         CGCAACACTGCTTCCTTCTATAAAACGTTTTCTTCCAAAAGAGTGGAATGA
genomic: AACGCTGTGCTCACTGCCTACTTTTTCATTCTAGGCATTGTTGCTCTCTCgtaagtccat ... tcttatgcagCGCAACACTGCTTCCTTCTATAAAACGTTTTCTTCCAAAAGAGTGGAATGA

EST: gi|94475590|gb|EB704548.1|EB704548

EST:     AACGCTGTGCTCACTGCCTACTTTTTCATTCTAGGCATTGTTGCTCTCTC                         CGCAACACTGCTTCCTTCTATAAAACGTTTTCTTCCCAAAGAGTGGAATGA
genomic: AACGCTGTGCTCACTGCCTACTTTTTCATTCTAGGCATTGTTGCTCTCTCgtaagtccat ... tcttatgcagCGCAACACTGCTTCCTTCTATAAAACGTTTTCTTCCAAAAGAGTGGAATGA

RNA-Seq data

ATGC Supported by RNA-Seq exonic block that spans over the splice site

atgs Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.

Found data for 4 RNA-Seq libraries.

Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 115

TGCTTTTATCACTGTTCCTTCTATTCAAGTTTCTCTCAAAAGATTTGGTCAACGCTGTGCTCACTGCCTACTTTTTCATTCTAGGCATTGTTGCTCTCTCgtaagtccat ... tcttatgcagCGCAACACTGCTTCCTTCTATAAAACGTTTTCTTCCAAAAGAGTGGAATGATAATCTCATCGTCTGGCGGGCTCCATTCTTCCACT

Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 157

Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 193