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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCTTTTATCACTGTTCCTTCTATTCAAGTTTCTCTCAAAAGATTTGGTCAACGCTGTGCTCACTGCCTACTTTTTCATTCTAGGCATTGTTGCTCTCTCgtaagtccattttttctcggaacgtcttttgcagacatgttaagctgtttatgtgctgtatttatgaggccgttcttatgcag

Basic information

species Zea mays
transcript GRMZM2G044348_T01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G044348_T04 (Zea mays), 5'ss of exon 4
lower sequence: Vv06s0009g03520.t01 (Vitis vinifera), 5'ss of exon 4
TGCTTTTATCACTGTTCCTTCTATTCAAGTTTCTCTCAAAAGATTTGGTCAACGCTGTGCTCACTGCCTACTTTTTCATTCTAGGCATTGTTGCTCTCTCgtaagtccattttttctcggaacgtcttttgcagacatgttaagctgtttatgtgctgtatttatgaggccgttcttatgcag-------------------------------------------
|||| |||||||| |||||||| ||||||||||| |||||||| ||||| || ||||| || ||   |||||| ||  | || || ||  | ||||| ||||| || |      | || | | |  |  |||    ||| | |    || || |  | |||||| ||    ||| | |||  |                                           
TGCTGTTATCACTATTCCTTCTCTTCAAGTTTCTATCAAAAGACTTGGTTAATGCTGTACTGACATGCTACTTCTTTGTGCTTGGGATCATCGCTCTTTCgtatgttc------tttccgtatggatcatgctactatgcttaatatttgatataat-tattta-gaaatagtt-tcatgtggtttggttcattatctcacattatctttcttctattttctgtag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|149012865|gb|EE042709.2|EE042709
EST:     AACGCTGTGCTCACTGCCTACTTTTTCATTCTAGGCATTGTTGCTCTCTC                         CGCAACACTGCTTCCTTCTATAAAACGTTTTCTTCCAAAAGAGTGGAATGA
genomic: AACGCTGTGCTCACTGCCTACTTTTTCATTCTAGGCATTGTTGCTCTCTCgtaagtccat ... tcttatgcagCGCAACACTGCTTCCTTCTATAAAACGTTTTCTTCCAAAAGAGTGGAATGA
EST: gi|211345313|gb|FL467149.1|FL467149
EST:     AACGCTGTGCTCACTGCCTACTTTTTCATTCTAGGCATTGTTGCTCTCTC                         CGCAACACTGCTTCCTTCTATAAAACGTTTTCTTCCAAAAGAGTGGAATGA
genomic: AACGCTGTGCTCACTGCCTACTTTTTCATTCTAGGCATTGTTGCTCTCTCgtaagtccat ... tcttatgcagCGCAACACTGCTTCCTTCTATAAAACGTTTTCTTCCAAAAGAGTGGAATGA
EST: gi|71435689|gb|DR816739.1|DR816739
EST:     AACGCTGTGCTCACTGCCTACTTTTTCATTCTAGGCATTGTTGCTCTCTC                         CGCAACACTGCTTCCTTCTATAAAACGTTTTCTTCCAAAAGAGTGGAATGA
genomic: AACGCTGTGCTCACTGCCTACTTTTTCATTCTAGGCATTGTTGCTCTCTCgtaagtccat ... tcttatgcagCGCAACACTGCTTCCTTCTATAAAACGTTTTCTTCCAAAAGAGTGGAATGA
EST: gi|148948442|gb|EC893960.2|EC893960
EST:     AACGCTGTGCTCACTGCCTACTTTTTCATTCTAGGCATTGTTGCTCTCTC                         CGCAACACTGCTTCCTTCTATAAAACGTTTTCTTCCAAAAGAGTGGAATGA
genomic: AACGCTGTGCTCACTGCCTACTTTTTCATTCTAGGCATTGTTGCTCTCTCgtaagtccat ... tcttatgcagCGCAACACTGCTTCCTTCTATAAAACGTTTTCTTCCAAAAGAGTGGAATGA
EST: gi|149027788|gb|EE286084.2|EE286084
EST:     AACGCTGTGCTCACTGCCTACTTTTTCATTCTAGGCATTGTTGCTCTCTC                         CGCAACACTGCTTCCTTCTATAAAACGTTTTCTTCCAAAAGAGTGGAATGA
genomic: AACGCTGTGCTCACTGCCTACTTTTTCATTCTAGGCATTGTTGCTCTCTCgtaagtccat ... tcttatgcagCGCAACACTGCTTCCTTCTATAAAACGTTTTCTTCCAAAAGAGTGGAATGA
EST: gi|148991460|gb|EE032969.2|EE032969
EST:     AACGCTGTGCTCACTGCCTACTTTTTCATTCTAGGCATTGTTGCTCTCTC                         CGCAACACTGCTTCCTTCTATAAAACGTTTTCTTCCCAAAGAGTGGAATGA
genomic: AACGCTGTGCTCACTGCCTACTTTTTCATTCTAGGCATTGTTGCTCTCTCgtaagtccat ... tcttatgcagCGCAACACTGCTTCCTTCTATAAAACGTTTTCTTCCAAAAGAGTGGAATGA
EST: gi|148948218|gb|EC893734.2|EC893734
EST:     AACGCTGTGCTCACTGCCTACTTTTTCATTCTAGGCATTGTTGCTCTCTC                         CGCAACACTGCTTCCTTCTATAAAACGTTTTCTTCCAAAAGAGTGGAATGA
genomic: AACGCTGTGCTCACTGCCTACTTTTTCATTCTAGGCATTGTTGCTCTCTCgtaagtccat ... tcttatgcagCGCAACACTGCTTCCTTCTATAAAACGTTTTCTTCCAAAAGAGTGGAATGA
EST: gi|32921110|gb|CF025922.1|CF025922
EST:     AACGCTGTGCTCACTGCCTACTTTTTCATTCTAGGCATTGTTGCTCTCTC                         CGCAACACTGCTTCCTTCTATAAAACGTTTTCTTCCAAAAGAGTGGAATGA
genomic: AACGCTGTGCTCACTGCCTACTTTTTCATTCTAGGCATTGTTGCTCTCTCgtaagtccat ... tcttatgcagCGCAACACTGCTTCCTTCTATAAAACGTTTTCTTCCAAAAGAGTGGAATGA
EST: gi|91875915|gb|EB405872.1|EB405872
EST:     AACGCTGTGCTCACTGCCTACTTTTTCATTCTAGGCATTGTTGCTCTCTC                         CGCAACACTGCTTCCTTCTATAAAACGTTTTCTTCCAAAAGAGTGGAATGA
genomic: AACGCTGTGCTCACTGCCTACTTTTTCATTCTAGGCATTGTTGCTCTCTCgtaagtccat ... tcttatgcagCGCAACACTGCTTCCTTCTATAAAACGTTTTCTTCCAAAAGAGTGGAATGA
EST: gi|149097124|gb|EE182936.2|EE182936
EST:     AACGCTGTGCTCACTGCCTACTTTTTCATTCTAGGCATTGTTGCTCTCTC                         CGCAACACTGCTTCCTTCTATAAAACGTTTTCTTCCAAAAGAGTGGAATGA
genomic: AACGCTGTGCTCACTGCCTACTTTTTCATTCTAGGCATTGTTGCTCTCTCgtaagtccat ... tcttatgcagCGCAACACTGCTTCCTTCTATAAAACGTTTTCTTCCAAAAGAGTGGAATGA
EST: gi|17930295|gb|BM267255.1|BM267255
EST:     AACGCTGTGCTCACTGCCTACTTTTTCATTCTAGGCATTGTTGCTCTCTC                         CGCAACACTGCTTCCTTCTATAAAACGTTTTCTTCCAAAAGAGTGGAATGA
genomic: AACGCTGTGCTCACTGCCTACTTTTTCATTCTAGGCATTGTTGCTCTCTCgtaagtccat ... tcttatgcagCGCAACACTGCTTCCTTCTATAAAACGTTTTCTTCCAAAAGAGTGGAATGA
EST: gi|149001048|gb|EE038297.2|EE038297
EST:     AACGCTGTGCTCACTGCCTACTTTTTCATTCTAGGCATTGTTGCTCTCTC                         CGCAACACTGCTTCCTTCTATAAAACGTTTTCTTCCAAAAGAGTGGAATGA
genomic: AACGCTGTGCTCACTGCCTACTTTTTCATTCTAGGCATTGTTGCTCTCTCgtaagtccat ... tcttatgcagCGCAACACTGCTTCCTTCTATAAAACGTTTTCTTCCAAAAGAGTGGAATGA
EST: gi|149100817|gb|EE186911.2|EE186911
EST:     AACGCTGTGCTCACTGCCTACTTTTTCATTCTAGGCATTGTTGCTCTCTC                         CGCAACACTGCTTCCTTCTATAAAACGTTTTCTTCCAAAAGAGTGGAATGA
genomic: AACGCTGTGCTCACTGCCTACTTTTTCATTCTAGGCATTGTTGCTCTCTCgtaagtccat ... tcttatgcagCGCAACACTGCTTCCTTCTATAAAACGTTTTCTTCCAAAAGAGTGGAATGA
EST: gi|78088713|gb|DV517106.1|DV517106
EST:     AACGCTGTGCTCACTGCCTACTTTTTCATTCTAGGCATTGTTGCTCTCTC                         CGCAACACTGCTTCCTTCTATAAAACGTTTTCTTCCAAAAGAGTGGAATGA
genomic: AACGCTGTGCTCACTGCCTACTTTTTCATTCTAGGCATTGTTGCTCTCTCgtaagtccat ... tcttatgcagCGCAACACTGCTTCCTTCTATAAAACGTTTTCTTCCAAAAGAGTGGAATGA
EST: gi|17930284|gb|BM267244.1|BM267244
EST:     AACGCTGTGCTCACTGCCTACTTTTTCATTCTAGGCATTGTTGCTCTCTC                         CGCAACACTGCTTCCTTCTATAAAACGTTTTCTTCCAAAAGAGTGGAATGA
genomic: AACGCTGTGCTCACTGCCTACTTTTTCATTCTAGGCATTGTTGCTCTCTCgtaagtccat ... tcttatgcagCGCAACACTGCTTCCTTCTATAAAACGTTTTCTTCCAAAAGAGTGGAATGA
EST: gi|149110465|gb|EE190430.2|EE190430
EST:     AACGCTGTGCTCACTGCCTACTTTTTCATTCTAGGCATTGTTGCTCTCTC                         CGCAACACTGCTTCCTTCTATAAAACGTTTTCTTCCAAAAGAGT
genomic: AACGCTGTGCTCACTGCCTACTTTTTCATTCTAGGCATTGTTGCTCTCTCgtaagtccat ... tcttatgcagCGCAACACTGCTTCCTTCTATAAAACGTTTTCTTCCAAAAGAGT
EST: gi|149067509|gb|EE157716.2|EE157716
EST:     AACGCTGTGCTCACTGCCTACTTTTTCATTCTAGGCATTGTTGCTCTCTC                         CGCAACACTGCTTCCTTCTATAAAACGTTTTCTTCCAAAAGAGTGGAATGA
genomic: AACGCTGTGCTCACTGCCTACTTTTTCATTCTAGGCATTGTTGCTCTCTCgtaagtccat ... tcttatgcagCGCAACACTGCTTCCTTCTATAAAACGTTTTCTTCCAAAAGAGTGGAATGA
EST: gi|148976595|gb|EE025942.2|EE025942
EST:     AACGCTGTGCTCACTGCCTACTTTTTCATTCTAGGCATTGTTGCTCTCTC                         CGCAACACTGCTTCCTTCTATAAAACGTTTTCTTCCAAAAGAGTGGAATGA
genomic: AACGCTGTGCTCACTGCCTACTTTTTCATTCTAGGCATTGTTGCTCTCTCgtaagtccat ... tcttatgcagCGCAACACTGCTTCCTTCTATAAAACGTTTTCTTCCAAAAGAGTGGAATGA
EST: gi|32921020|gb|CF025832.1|CF025832
EST:     AACGCTGTGCTCACTGCCTACTTTTTCATTCTAGGCATTGTTGCTCTCTC                         CGCAACACTGCTTCCTTCTATAAAACGTTTTCTTCCAAAAGAGTGGAATGA
genomic: AACGCTGTGCTCACTGCCTACTTTTTCATTCTAGGCATTGTTGCTCTCTCgtaagtccat ... tcttatgcagCGCAACACTGCTTCCTTCTATAAAACGTTTTCTTCCAAAAGAGTGGAATGA
EST: gi|31360319|gb|CD444676.1|CD444676
EST:     AACGCTGTGCTCACTGCCTACTTTTTCATTCTAGGCATTGTTGCTCTCTC                         CGCAACACTGCTTCCTTCTATAAAACGTTTTCTTCCAAAAGAGTGGAATGA
genomic: AACGCTGTGCTCACTGCCTACTTTTTCATTCTAGGCATTGTTGCTCTCTCgtaagtccat ... tcttatgcagCGCAACACTGCTTCCTTCTATAAAACGTTTTCTTCCAAAAGAGTGGAATGA
EST: gi|148943973|gb|EC889054.2|EC889054
EST:     AACGCTGTGCTCACTGCCTACTTTTTCATTCTAGGCATTGTTGCTCTCTC                         CGCAACACTGCTTCCTTCTATAAAACGTTTTCTTCCAAAAGAGTGGAATGA
genomic: AACGCTGTGCTCACTGCCTACTTTTTCATTCTAGGCATTGTTGCTCTCTCgtaagtccat ... tcttatgcagCGCAACACTGCTTCCTTCTATAAAACGTTTTCTTCCAAAAGAGTGGAATGA
EST: gi|211267467|gb|FK986909.1|FK986909
EST:     AACGCTGTGCTCACTGCCTACTTTTTCATTCTAGGCATTGTTGCTCTCTC                         CGCAACACTGCTTCCTTCTATAAAACGTTTTCTTTCAAAAGAGTGGAATGA
genomic: AACGCTGTGCTCACTGCCTACTTTTTCATTCTAGGCATTGTTGCTCTCTCgtaagtccat ... tcttatgcagCGCAACACTGCTTCCTTCTATAAAACGTTTTCTTCCAAAAGAGTGGAATGA
EST: gi|148930101|gb|EC872413.2|EC872413
EST:     AACGCTGTGCTCACTGCCTACTTTTTCATTCTAGGCATTGTTGCTCTCTC                         CGCAACACTGCTTCCTTCTATAAAACGTTTTCTTCCAAAAGAGTGGAATGA
genomic: AACGCTGTGCTCACTGCCTACTTTTTCATTCTAGGCATTGTTGCTCTCTCgtaagtccat ... tcttatgcagCGCAACACTGCTTCCTTCTATAAAACGTTTTCTTCCAAAAGAGTGGAATGA
EST: gi|94475590|gb|EB704548.1|EB704548
EST:     AACGCTGTGCTCACTGCCTACTTTTTCATTCTAGGCATTGTTGCTCTCTC                         CGCAACACTGCTTCCTTCTATAAAACGTTTTCTTCCCAAAGAGTGGAATGA
genomic: AACGCTGTGCTCACTGCCTACTTTTTCATTCTAGGCATTGTTGCTCTCTCgtaagtccat ... tcttatgcagCGCAACACTGCTTCCTTCTATAAAACGTTTTCTTCCAAAAGAGTGGAATGA