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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAAGAATTGCGGAAGTGGTTTCTCTCCATGGAGACTACACTTTTTCGGTATCGCTTTCGGCTTGAGAGTCCTGAAACACAGgtgacttcctatccatttaccatagaactgacaaaggaaaataatatgcatttatgctttaactgttgcttgttgcacatcatctgtttcag

Basic information

species Zea mays
transcript GRMZM2G044317_T04
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G044317_T04 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os07g22400.1 (Oryza sativa), 5'ss of exon 4
GGAAGAATTGCGGAAGTGGTTTCTCTCCATGGAGACTACACTTTTTCGGTATCGCTTTCGGCTTGAGAGTCCTGAAACACAGgtgacttcctatccatttaccatagaactgacaaaggaaaataatatgcatttatgctttaactgttgcttgttgcacatcatctgtttcag
||| ||  ||||||||||||||||||||||||||||||| |||||||| |||||||||||||| |||||||||||| |||||||||||| || ||| |||     | |     ||| | ||  ||        | |||||||||| ||| ||||   ||||   | | ||||||
GGAGGAGCTGCGGAAGTGGTTTCTCTCCATGGAGACTACGCTTTTTCGCTATCGCTTTCGGCTCGAGAGTCCTGAATCACAGgtgactttctgtccttttcttgcata-----caaggaaagcta--------tcatgctttaaccgttccttgc--cacactgtatttttcag