Sequence
atgc intronic sequence ATGC exonic sequenceTGCGAATTCTGCTGCTGTGGCCATTACAACTACAGACCTTGTTAGCAAGAGCATTGCTGTCCAGACTGAGgtttgagtctcttggtttacttattgttatttccttagattttattgtcatatttttttttttgttcaaaactag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G044237_T01 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os03g17120.1 (Oryza sativa), 5'ss of exon 8
TGCGAATTCTGCTGCTGTGGCCATTACAACTACAGACCTTGTTAGCAAGAGCATTGCTGTCCAGACTGAGgtttgagtctcttggtttacttattgttatttccttagattttattgtcatatttttttttttgttcaaaactag------------------
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TGCAAATTCTGCAGCTGTGGCCATTACAACTACAGACCTTGTTAGCAAGAGCATCGCTGTACAGACAGAGgtttgactttcttagcct-cgtattatt--ctcattaggtttatttggtttgacattatctttgttcttatcatctctttattgaaaagttag
upper sequence: GRMZM2G044237_T01 (Zea mays), 5'ss of exon 7
lower sequence: GLYMA13G19450.1 (Glycine max), 5'ss of exon 9
TGCGAATTCTGCTGCTGTGGCCATTACAACTACAGACCTTGTTAGCAAGAGCATTGCTGTCCAGACTGAGgt--------ttgagtctcttggtttacttattgttatttccttagatt--ttattgtcatatttttttttttgttcaaaactag---------------
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GGCAGATTCTGCAGCTGTGGCAATCACCACTACAGATCTTGTTAGCAAGAGTGTGGCAATTGAGTCTCTGgtatttcttgttactattttttgctcacttgttttaagttgatacaactagtttgtatgtaactgttttattagcacacatacatatatagataaacgcaMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|76917242|gb|DV166726.1|DV166726EST: GCATTGCTGTCCAGACTGAG ATTGGAGGAGTGGCTATTAGAATAGGTGGGATGGCTAAAGGTTCTGGAATG
genomic: GCATTGCTGTCCAGACTGAGgtttgagtct ... tcaaaactagATTGGAGGAGTGGCTATTAGAATAGGTGGGATGGCTAAAGGTTCTGGAATG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGCGAATTCTGCTGCTGTGGCCATTACAACTACAGACCTTGTTAGCAAGAGCATTGCTGTCCAGACTGAGgtttgagtctcttggtttacttattgttatttccttagattttattgtcatatttttttttttgttcaaaactag
- - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - AGAGCA