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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTACATTTTTCATATCTTGTGCAGATATTCCGGGGACTAGCTTATATTCATACTGTACCAGGAATTTGTCACCGAGATATTAAGCCTCAGAATATCTTGgtatgctggtttagtgttttttatgctaagcatgtgcttgttcccgcttcttgttcatgacgttcagttggaaaatgctggccttctctttttcttattgtttgatag

Basic information

species Zea mays
transcript GRMZM2G043350_T02
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G043350_T02 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os06g35530.1 (Oryza sativa), 5'ss of exon 5
TTTACATTTTTCATATCTTGTGCAGATATTCCGGGGACTAGCTTATATTCATACTGTACCAGGAATTTGTCACCGAGATATTAAGCCTCAGAATATCTTGgtatgctggtttagtgttttttatgctaagcatgtgcttgttcccgcttcttgttcatgacgttcagttggaaaatgctggccttctctttttcttattgtttgatag
                         |||||||| ||| ||||||| ||||| ||||| || ||| |||||||||||||||| ||||| || |||||||||||||||   |||       ||  | | |||| | | | ||||           ||||    | |      |||||| || |  ||   || |  | || |        
-------------------------ATATTCCGCGGATTAGCTTACATTCACACTGTTCCTGGAGTTTGTCACCGAGATATAAAGCCACAAAATATCTTGgtatgccctttt------cttcttaccaagcgtat-catgtt-----------ttcacactgctgcagctgaaaattcttggttttgattgtgttgatag--------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211363839|gb|FL067525.1|FL067525
EST:     ATACTGTACCAGGAATTTGTCACCGAGATATTAAGCCTCAGAATATCTTG                         GTGGATCCTCTTTCCCACCAAGTCAAGGTTTGTGACTTCGGGAGTGCTAAA
genomic: ATACTGTACCAGGAATTTGTCACCGAGATATTAAGCCTCAGAATATCTTGgtatgctggt ... tgtttgatagGTGGATCCTCTTTCCCACCAAGTCAAGGTTTGTGACTTCGGGAGTGCTAAA