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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGGCGAGTACCAAGGTGCATACAAGgtcagtaatatttccaaagatttatgcttcattttttccctccccgtggcaactgaaaagtaatatacaaatgttgccggtattaagcttctcttcattgttgcag

Basic information

species Zea mays
transcript GRMZM2G043198_T02
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211444057|gb|FL415432.1|FL415432
EST:     GTTGGCGAATACCAAGGTGCATACAAG                         ATATCCAAGGGTTTGCTTGACAAGTATGGCCCGGATAGGGTTCTCGATACT
genomic: GTTGGCGAGTACCAAGGTGCATACAAGgtcagtaata ... attgttgcagATATCCAAGGGTTTGCTTGACAAGTATGGCCCCGATAGGGTTCTCGATACT
EST: gi|211273080|gb|FL371948.1|FL371948
EST:     GTTGGCGAATACCAAGGTGCATACAAG                         ATATCCAAGGGTTTGCTTGACAAGTATGGCCCGGATAGGGTTCTCGATACT
genomic: GTTGGCGAGTACCAAGGTGCATACAAGgtcagtaata ... attgttgcagATATCCAAGGGTTTGCTTGACAAGTATGGCCCCGATAGGGTTCTCGATACT
EST: gi|211491514|gb|FL426447.1|FL426447
EST:     GTTGGCGAGTACCAAGGTGCATACAAG                         ATATCCAAGGGTTTGCTTGACAAGTATGGCCCCGATAGG-TTCTCGATACT
genomic: GTTGGCGAGTACCAAGGTGCATACAAGgtcagtaata ... attgttgcagATATCCAAGGGTTTGCTTGACAAGTATGGCCCCGATAGGGTTCTCGATACT
EST: gi|211003333|gb|FL404181.1|FL404181
EST:     GTTGGCGAATACCAAGGTGCATACAAG                         ATATCCAAGGGTTTGCTTGACAAGTATGGCCCGGATAGGGTTCTCGATACT
genomic: GTTGGCGAGTACCAAGGTGCATACAAGgtcagtaata ... attgttgcagATATCCAAGGGTTTGCTTGACAAGTATGGCCCCGATAGGGTTCTCGATACT
EST: gi|148930818|gb|EC873192.2|EC873192
EST:     GTTGGCGAGTACCAAGGTGCATACAAG                         ATATCCAAGGGTTTGCTTGACAAGTATGGCCCCGATAGGGTTCTCGATACT
genomic: GTTGGCGAGTACCAAGGTGCATACAAGgtcagtaata ... attgttgcagATATCCAAGGGTTTGCTTGACAAGTATGGCCCCGATAGGGTTCTCGATACT
EST: gi|211084499|gb|FL378037.1|FL378037
EST:     GTTGGCGAGTACCAAGGTGCATACAAG                         ATATCCAAGGGTTTGCTTGACAAGTATGGCCCCGATAGGGTTCTCGATACT
genomic: GTTGGCGAGTACCAAGGTGCATACAAGgtcagtaata ... attgttgcagATATCCAAGGGTTTGCTTGACAAGTATGGCCCCGATAGGGTTCTCGATACT
EST: gi|32828890|gb|CD968568.1|CD968568
EST:     GTTGGCGAATACCAAGGTGCATACAAG                         ATATCCAAGGGTTTGCTTGACAAGTATGGCCCGGATAGGGTTCTCGATACT
genomic: GTTGGCGAGTACCAAGGTGCATACAAGgtcagtaata ... attgttgcagATATCCAAGGGTTTGCTTGACAAGTATGGCCCCGATAGGGTTCTCGATACT
EST: gi|32799489|gb|CD951725.1|CD951725
EST:     GTTGGCGAATACCAAGGTGCATACAAG                         ATATCCAAGGGTTTGCTTGACAAGTATGGCCCGGGTAGGGTTCTTGATACT
genomic: GTTGGCGAGTACCAAGGTGCATACAAGgtcagtaata ... attgttgcagATATCCAAGGGTTTGCTTGACAAGTATGGCCCCGATAGGGTTCTCGATACT
EST: gi|148953725|gb|EC899090.2|EC899090
EST:     GTTGGCGAGTACCAAGGTGCATACAAG                         AAATCCAAGGGTTTGCTTGAACA-GTATGGCCCCGATAGG
genomic: GTTGGCGAGTACCAAGGTGCATACAAGgtcagtaata ... attgttgcagATATCCAAGGGTTTGCTTGA-CAAGTATGGCCCCGATAGG
EST: gi|32804720|gb|CD956956.1|CD956956
EST:     GTTGGCGAATACCAAGGTGCATACAAG                         ATATCCAAGGGTTTGCTTGACAAGTATGGCCCGGATAGGGTTCTCGATACT
genomic: GTTGGCGAGTACCAAGGTGCATACAAGgtcagtaata ... attgttgcagATATCCAAGGGTTTGCTTGACAAGTATGGCCCCGATAGGGTTCTCGATACT
EST: gi|38687965|gb|CK144996.1|CK144996
EST:     GTTGGCGAGTACCAAGGTGCATACAAG                         ATATCCAAGGGTTTGCTTGACAAGTATGGCCCCGATAGGGTTCTCGATACT
genomic: GTTGGCGAGTACCAAGGTGCATACAAGgtcagtaata ... attgttgcagATATCCAAGGGTTTGCTTGACAAGTATGGCCCCGATAGGGTTCTCGATACT
EST: gi|93281968|gb|EB674232.1|EB674232
EST:     GTTGGCGAGTACCAAGGTGCATACAAG                         ATATCCAAGGGTTTGCTTGACAAGTATGGCCCCGATAGGGTTCTCGATACT
genomic: GTTGGCGAGTACCAAGGTGCATACAAGgtcagtaata ... attgttgcagATATCCAAGGGTTTGCTTGACAAGTATGGCCCCGATAGGGTTCTCGATACT
EST: gi|211431560|gb|FL401076.1|FL401076
EST:     GTTGGCGAGTACCAAGGTGCATACAAG                         ATATCCAAGGGTTTGCTTGACAAGTATGGCCCCGATAGGGTTCTCGATACT
genomic: GTTGGCGAGTACCAAGGTGCATACAAGgtcagtaata ... attgttgcagATATCCAAGGGTTTGCTTGACAAGTATGGCCCCGATAGGGTTCTCGATACT
EST: gi|211311674|gb|FL419261.1|FL419261
EST:     GTTGGCGAGTACCAAGGTGCATACAAG                         ATATCCAAGGGTTTGCTTGACAAGTATGGCCCCGATAGGGTTCTCGATACT
genomic: GTTGGCGAGTACCAAGGTGCATACAAGgtcagtaata ... attgttgcagATATCCAAGGGTTTGCTTGACAAGTATGGCCCCGATAGGGTTCTCGATACT
EST: gi|211503999|gb|FL380203.1|FL380203
EST:     GTTGGCGAGTACCAAGGTGCATACAAG                         ATATCCAAGGGTTTGCTTGACAAGTATGGCCCCGATAGGGTTCTCGATACT
genomic: GTTGGCGAGTACCAAGGTGCATACAAGgtcagtaata ... attgttgcagATATCCAAGGGTTTGCTTGACAAGTATGGCCCCGATAGGGTTCTCGATACT
EST: gi|211056917|gb|FL385087.1|FL385087
EST:     GTTGGCGAGTACCAAGGTGCATACAAG                         ATATCCAAGGGTTTGCTTGACAAGTATGGCCCCCGATAGGGTTCTCGATAC
genomic: GTTGGCGAGTACCAAGGTGCATACAAGgtcagtaata ... attgttgcagATATCCAAGGGTTTGCTTGACAAGTATGGCCCC-GATAGGGTTCTCGATAC
EST: gi|211395332|gb|FL395257.1|FL395257
EST:     GTTGGCGAGTACCAAGGTGCATACAAG                         ATATCCAAGGGTTTGCTTGACAAGTATGGCCCCGATAGGGTTCTCGATACT
genomic: GTTGGCGAGTACCAAGGTGCATACAAGgtcagtaata ... attgttgcagATATCCAAGGGTTTGCTTGACAAGTATGGCCCCGATAGGGTTCTCGATACT
EST: gi|8367328|gb|BE050273.1|BE050273
EST:     GTTGGCGAGTACCAAGGTGCATACAAG                         ATATCCAAGGGTTTGCTT
genomic: GTTGGCGAGTACCAAGGTGCATACAAGgtcagtaata ... attgttgcagATATCCAAGGGTTTGCTT
EST: gi|211017664|gb|FL418154.1|FL418154
EST:     GTTGGCGAGTACCAAGGTGCATACAAG                         ATATCCAAGGGTTTGCTTGACAAGTATGGCCCCGATAGGGTTCTCGATACT
genomic: GTTGGCGAGTACCAAGGTGCATACAAGgtcagtaata ... attgttgcagATATCCAAGGGTTTGCTTGACAAGTATGGCCCCGATAGGGTTCTCGATACT
EST: gi|211499368|gb|FL394923.1|FL394923
EST:     GTTGGCGAGTACCAAGGTGCATACAAG                         ATATCCAAGGGTTTGCTTGACAAGTATGGCCCCGATAGGGTTCTCGATACT
genomic: GTTGGCGAGTACCAAGGTGCATACAAGgtcagtaata ... attgttgcagATATCCAAGGGTTTGCTTGACAAGTATGGCCCCGATAGGGTTCTCGATACT
EST: gi|211423792|gb|FL402788.1|FL402788
EST:     GTTGGCGAATACCAAGGTGCATACAAG                         ATATCCAAGGGTTTGCTTGACAAGTATGGCCCGGATAGGGTTCTCGATACT
genomic: GTTGGCGAGTACCAAGGTGCATACAAGgtcagtaata ... attgttgcagATATCCAAGGGTTTGCTTGACAAGTATGGCCCCGATAGGGTTCTCGATACT
EST: gi|211063939|gb|FL426137.1|FL426137
EST:     GTTGGCGAGTACCAAGGTGCATACAAG                         ATATCCAAGGGTTTGCTTGACAAGTATGGCCCCGATAGGGTTCTCGATACT
genomic: GTTGGCGAGTACCAAGGTGCATACAAGgtcagtaata ... attgttgcagATATCCAAGGGTTTGCTTGACAAGTATGGCCCCGATAGGGTTCTCGATACT
EST: gi|32828953|gb|CD968631.1|CD968631
EST:     GTTGGCGAATACCAAGGTGCATACAAG                         ATATCCAAGGGTTTGCTTGACAAGTATGGCCCGGATAGGGTTCTCGATACT
genomic: GTTGGCGAGTACCAAGGTGCATACAAGgtcagtaata ... attgttgcagATATCCAAGGGTTTGCTTGACAAGTATGGCCCCGATAGGGTTCTCGATACT
EST: gi|211099620|gb|FL375433.1|FL375433
EST:     GTTGGCGAGTACCAAGGTGCATACAAG                         ATATCCAAGGGTTTGCTTGACAAGTATGGCCCCGATAGGGTTCTCGATACT
genomic: GTTGGCGAGTACCAAGGTGCATACAAGgtcagtaata ... attgttgcagATATCCAAGGGTTTGCTTGACAAGTATGGCCCCGATAGGGTTCTCGATACT
EST: gi|211542664|gb|FL412592.1|FL412592
EST:     GTTGGCGAATACCAAGGTGCATACAAG                         ATATCCAAGGGTTTGCTTGACAAGTATGGCCCGGATAGGGTTCTCGATACT
genomic: GTTGGCGAGTACCAAGGTGCATACAAGgtcagtaata ... attgttgcagATATCCAAGGGTTTGCTTGACAAGTATGGCCCCGATAGGGTTCTCGATACT
EST: gi|211054277|gb|FL399886.1|FL399886
EST:     GTTGGCGAATACCAAGGTGCATACAAG                         ATATCCAAGGGTTTGCTTGACAAGTATGGCCCGGATAGGGTTCTCGATACT
genomic: GTTGGCGAGTACCAAGGTGCATACAAGgtcagtaata ... attgttgcagATATCCAAGGGTTTGCTTGACAAGTATGGCCCCGATAGGGTTCTCGATACT
EST: gi|211479962|gb|FL426376.1|FL426376
EST:     GTTGGCGAGTACCAAGGTGCATACAAG                         ATATCCAAGGGTTTGCTTGACAAGTATGGCCCCGATAGGGTTCTCGATACT
genomic: GTTGGCGAGTACCAAGGTGCATACAAGgtcagtaata ... attgttgcagATATCCAAGGGTTTGCTTGACAAGTATGGCCCCGATAGGGTTCTCGATACT
EST: gi|31357689|gb|CD442046.1|CD442046
EST:     GTTGGCGAGTACCAAGGTGCATACAAG                         ATATCCAAGGGTTTGCTTGACAAGTATGGCCCCGATAGGGTTCTCGATACT
genomic: GTTGGCGAGTACCAAGGTGCATACAAGgtcagtaata ... attgttgcagATATCCAAGGGTTTGCTTGACAAGTATGGCCCCGATAGGGTTCTCGATACT
EST: gi|20507600|gb|BQ279700.1|BQ279700
EST:     GTGCATACAAG                         ATATCCAAGGGTTTGCTTGACAAGTATGGCCCCGATAGGGTTCTCGATACT
genomic: GTGCATACAAGgtcagtaata ... attgttgcagATATCCAAGGGTTTGCTTGACAAGTATGGCCCCGATAGGGTTCTCGATACT
EST: gi|211530195|gb|FL395784.1|FL395784
EST:     GTTGGCGAATACCAAGGTGCATACAAG                         ATATCCAAGGGTTTGCTTGACAAGTATGGCCCGGATAGGGTTCTCGATACT
genomic: GTTGGCGAGTACCAAGGTGCATACAAGgtcagtaata ... attgttgcagATATCCAAGGGTTTGCTTGACAAGTATGGCCCCGATAGGGTTCTCGATACT
EST: gi|211016844|gb|FL388973.1|FL388973
EST:     GTTGGCGAGTACCAAGGTGCATACAAG                         ATATCCAAGGGTTTGCTTGACAAGTATGGCCCCGATAGGGTTCTCGATACT
genomic: GTTGGCGAGTACCAAGGTGCATACAAGgtcagtaata ... attgttgcagATATCCAAGGGTTTGCTTGACAAGTATGGCCCCGATAGGGTTCTCGATACT