1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
CTTGTCCAAGAGCACTGAAGTGATGAAACTTGTCAACGGCCTCATGAAAGCCCCCGAGGTCGCAGCCACAATGCAGGAATTCAGCAAAGAGATGACAAAGgtacaatgcctgctaggttgcgctgtgatcactcatactctccaaaggactatcttgcattaaactagctgtagtaatttttgcctcgtcgtttatgtggtgtag
species | Zea mays |
transcript | GRMZM2G042552_T02 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: CCCCCGAGGTCGCAGCCACAATGCAGGAATTCAGCAAAGAGATGACAAAG GCTGGTGTGATGGAAGAAATGGTCAACGATGCTTTAGATTCAACGCTGGACEST: gi|44901356|gb|CK827901.1|CK827901
genomic: CCCCCGAGGTCGCAGCCACAATGCAGGAATTCAGCAAAGAGATGACAAAGgtacaatgcc ... tgtggtgtagGCTGGTGTGATGGAAGAAATGGTCAACGATGCTTTAGATTCAACGCTGGAC
EST: CCCCGGAGGTTGCAGCCACAATGCAGGAATTCAGCAAAGAGATGACAAAG GCTGGTGTGATGGAAGAAATGGTCAACGATGCTTTAGATTCAACTCTGGACEST: gi|32834245|gb|CD973923.1|CD973923
genomic: CCCCCGAGGTCGCAGCCACAATGCAGGAATTCAGCAAAGAGATGACAAAGgtacaatgcc ... tgtggtgtagGCTGGTGTGATGGAAGAAATGGTCAACGATGCTTTAGATTCAACGCTGGAC
EST: CCCCCGAGGTCGCAGCCACAATGCAGGAATTCAGCAAAGAGATGACAAAG GCTGGTGTGATGGAAGAAATGGTCAACGATGCTTTAGATTCAATGCTGGACEST: gi|14255660|gb|BG878568.1|BG878568
genomic: CCCCCGAGGTCGCAGCCACAATGCAGGAATTCAGCAAAGAGATGACAAAGgtacaatgcc ... tgtggtgtagGCTGGTGTGATGGAAGAAATGGTCAACGATGCTTTAGATTCAACGCTGGAC
EST: CCCCCGAGGTCGCAGCCTCAATGCAGGAATTCAGCAAAGAGATGACAAAG GCTGGTGTGATGGAAGAAATGGTCAACGATGCTTTAGATTCAACGCTGGACEST: gi|113702321|gb|EE679825.1|EE679825
genomic: CCCCCGAGGTCGCAGCCACAATGCAGGAATTCAGCAAAGAGATGACAAAGgtacaatgcc ... tgtggtgtagGCTGGTGTGATGGAAGAAATGGTCAACGATGCTTTAGATTCAACGCTGGAC
EST: CCCCGGAGGTTGCAGCCACAATGCAGGAATTCAGCAAAGAGATGACAAAG GCTGGTGTGATGGAAGAAATGGTCAACGATGCTTTAGATTCAACTCTGGACEST: gi|4646886|gb|AI621961.1|AI621961
genomic: CCCCCGAGGTCGCAGCCACAATGCAGGAATTCAGCAAAGAGATGACAAAGgtacaatgcc ... tgtggtgtagGCTGGTGTGATGGAAGAAATGGTCAACGATGCTTTAGATTCAACGCTGGAC
EST: AGGAATTCAGCAAAGAGATGACAAAG GCTGGTGTGATGGAAGAAATGGTCAACGATGCTTTAGATTCAACGCTGGACEST: gi|21759932|gb|BQ635473.1|BQ635473
genomic: AGGAATTCAGCAAAGAGATGACAAAGgtacaatgcc ... tgtggtgtagGCTGGTGTGATGGAAGAAATGGTCAACGATGCTTTAGATTCAACGCTGGAC
EST: AGGAATTCAGCAAAGAGATGACAAAG GCTGGTGTGATGGAAGAAATGGTCAACGATGCTTTAGATTCAACTCTGGACEST: gi|60399737|gb|DN232547.1|DN232547
genomic: AGGAATTCAGCAAAGAGATGACAAAGgtacaatgcc ... tgtggtgtagGCTGGTGTGATGGAAGAAATGGTCAACGATGCTTTAGATTCAACGCTGGAC
EST: CCCCCGAGGTCGCAGCCACAATGCAGGAATTCAGCAAAGAGATGACAAAG GCTGGTGTGATGGAAGAAATGGTCAACGATGCTTTAGATTCAACGCTGGACEST: gi|14311555|gb|BG901310.1|BG901310
genomic: CCCCCGAGGTCGCAGCCACAATGCAGGAATTCAGCAAAGAGATGACAAAGgtacaatgcc ... tgtggtgtagGCTGGTGTGATGGAAGAAATGGTCAACGATGCTTTAGATTCAACGCTGGAC
EST: CCCCCGAGGTCGCAGCCACAATGCAGGAATTCAGCAAAGAGATGACAAAG GCTGGTGTGATGGAAGAAATGGTCAACGATGCTTTAGATTCAACGCTGGAC
genomic: CCCCCGAGGTCGCAGCCACAATGCAGGAATTCAGCAAAGAGATGACAAAGgtacaatgcc ... tgtggtgtagGCTGGTGTGATGGAAGAAATGGTCAACGATGCTTTAGATTCAACGCTGGAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTTGTCCAAGAGCACTGAAGTGATGAAACTTGTCAACGGCCTCATGAAAGCCCCCGAGGTCGCAGCCACAATGCAGGAATTCAGCAAAGAGATGACAAAGgtacaatgcctgctaggttgcgctgtgatcactcatactctccaaaggactatcttgcattaaactagctgtagtaatttttgcctcgtcgtttatgtggtgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG