1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
AAGTTTATCAATAGAGACTTTGGCTCCCACGAGGGTATGATCCGGCAATTCATGGATGCTGCACTAACTCAGTTCGGTTCTGGATGGGTTTGGCTTTCCTgtaagtgatgctgacgaccatgcctcttgccttcactgttctacgtactctgtagcgggccaattccctgtatgccactggaaaatatactcattcctta...
species | Zea mays |
transcript | GRMZM2G042080_T01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: CATGGATGCTGCACTAACTCAGTTCGGTTCTGGATGGGTTTGGCTTTCCT ACAAAGGAAGCGGGTTGCCTTATGTGAAATCGAGAAGCCCCATCCCATCGGEST: gi|149075255|gb|EE163758.2|EE163758
genomic: CATGGATGCTGCACTAACTCAGTTCGGTTCTGGATGGGTTTGGCTTTCCTgtaagtgatg ... ctggttgtagACAAAGGAAGCGGGTTGCCTTATGTGAAATCGAGAAGCCCCATCCCATCGG
EST: CATGGATGCTGCACTAACTCAGTTCGGTTCTGGATGGGTTTGGCTTTCCT ACAAAGGAAGCGGEST: gi|148993468|gb|EE033787.2|EE033787
genomic: CATGGATGCTGCACTAACTCAGTTCGGTTCTGGATGGGTTTGGCTTTCCTgtaagtgatg ... ctggttgtagACAAAGGAAGCGG
EST: CATGGATGCTGCACTAACTCAGTTCGGTTCTGGATGGGTTTGGCTTTCCT ACAAAGGAAGCGGGTTGCCTTATGTGAAAT
genomic: CATGGATGCTGCACTAACTCAGTTCGGTTCTGGATGGGTTTGGCTTTCCTgtaagtgatg ... ctggttgtagACAAAGGAAGCGGGTTGCCTTATGTGAAAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAGTTTATCAATAGAGACTTTGGCTCCCACGAGGGTATGATCCGGCAATTCATGGATGCTGCACTAACTCAGTTCGGTTCTGGATGGGTTTGGCTTTCCTgtaagtgatgctgacgaccatgcctcttgccttcactgttctacgtactctgtagcgggccaattccctgtatgccactggaaaatatactcattcctta
- - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC