1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
TTCCGATGAGAGGTTTATTGCCGTGAATAGGAGCAGTGGCCCATGCAGAGTGTGGGATTTGCAGTCATCTGAAGTTGTAGCCAGTCTGCCAAGAGAAGCAgtgagttcttttctcgggcgaaatgcattattagaatgattccatgtctttgtttcaatagagtttgatctgtacatttccag
species | Zea mays |
transcript | GRMZM2G041642_T03 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: CCAAGAGAAGCA GGGGAAATGTTT-GATTCTGCAGATTTTGTAATAAGGCAGACAACAGTCATEST: gi|32823302|gb|CD963024.1|CD963024
genomic: CCAAGAGAAGCAgtgagttctt ... acatttccagGGGGAAATGTTTGGATTCTGCAGATTTTGTAATAAGGCAGACAACAGTCAT
EST: GTGGGATTTGC-GTTCATCTGAAGTTGTAGCCAGTCTGCCAAGAGAAGCA GGGGAAATGTTTGGATTCTGCAGATTTTGTAATAAGGCAGACAACAGTCATEST: gi|5895643|gb|AW036889.1|AW036889
genomic: GTGGGATTTGCAG-TCATCTGAAGTTGTAGCCAGTCTGCCAAGAGAAGCAgtgagttctt ... acatttccagGGGGAAATGTTTGGATTCTGCAGATTTTGTAATAAGGCAGACAACAGTCAT
EST: CCAAGAGAAGCA GGGGAAATGTTTGGATTCTGCAGATTTTGTAATAAGGCAGACAACAGTCATEST: gi|32794408|gb|CD946644.1|CD946644
genomic: CCAAGAGAAGCAgtgagttctt ... acatttccagGGGGAAATGTTTGGATTCTGCAGATTTTGTAATAAGGCAGACAACAGTCAT
EST: TGTGGGATTTGCAGTCATCTGAAGTTGTAGCCAGTCTGCCAAGAGAAGCA GGGGAAATGTTTGGATTCTGCAGATTTTGTAATAAGGCAGACAACAGTCAT
genomic: TGTGGGATTTGCAGTCATCTGAAGTTGTAGCCAGTCTGCCAAGAGAAGCAgtgagttctt ... acatttccagGGGGAAATGTTTGGATTCTGCAGATTTTGTAATAAGGCAGACAACAGTCAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTCCGATGAGAGGTTTATTGCCGTGAATAGGAGCAGTGGCCCATGCAGAGTGTGGGATTTGCAGTCATCTGAAGTTGTAGCCAGTCTGCCAAGAGAAGCAgtgagttcttttctcgggcgaaatgcattattagaatgattccatgtctttgtttcaatagagtttgatctgtacatttccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC