1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' |
TGGGGTTGCTCCATTTGGTGACCTTTTAGTCGTACTTGCCTATATTCCTGATGAGGATGAAAAAGAGAAAACATTTAGTACTTCTGTTACTTCACGACAGgtaatcatcacatctctgaatgtctgttacatctgcattgcataccatgtacctttgcttctaaaataatgcttctgacttctgagattgatgttcctgttatgtttctaaaattttgcag
species | Zea mays |
transcript | GRMZM2G040247_T01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: ATGAGGATGAAAAAGAGAAAACATTTAGTACTTCTGTTACTTCACGACAG GGAACTGCACAGCGTCCAGAAATACATCTTGTATCATGGAAAAATGATGAGEST: gi|211214540|gb|FL384281.1|FL384281
genomic: ATGAGGATGAAAAAGAGAAAACATTTAGTACTTCTGTTACTTCACGACAGgtaatcatca ... aattttgcagGGAACTGCACAGCGTCCAGAAATACATCTTGTATCATGGAAAAATGATGAG
EST: ATGAGGATGAAAAAGAGAAAACATTTAGTACTTCTGTTACTTCACGACAG GGAACTGCACAGCGTCCAGAAATACATCTTGTATCATGGAAAAATGATGAGEST: gi|211078863|gb|FL369087.1|FL369087
genomic: ATGAGGATGAAAAAGAGAAAACATTTAGTACTTCTGTTACTTCACGACAGgtaatcatca ... aattttgcagGGAACTGCACAGCGTCCAGAAATACATCTTGTATCATGGAAAAATGATGAG
EST: ATGAGGATGAAAAAGAGAAAACATTTAGTACTTCTGTTACTTCACGACAG GGAACTGCACAGCGTCCAGAAATACATCTTGTATCATGGAAAAATGATGAGEST: gi|211493350|gb|FL383684.1|FL383684
genomic: ATGAGGATGAAAAAGAGAAAACATTTAGTACTTCTGTTACTTCACGACAGgtaatcatca ... aattttgcagGGAACTGCACAGCGTCCAGAAATACATCTTGTATCATGGAAAAATGATGAG
EST: ATGAGGATGAAAAAGAGAAAACATTTAGTACTTCTGTTACTTCACGACAG GGAACTGCACAGCGTCCAGAAATACATCTTGTATCATGGAAAAATGATGAGEST: gi|211321896|gb|FL419697.1|FL419697
genomic: ATGAGGATGAAAAAGAGAAAACATTTAGTACTTCTGTTACTTCACGACAGgtaatcatca ... aattttgcagGGAACTGCACAGCGTCCAGAAATACATCTTGTATCATGGAAAAATGATGAG
EST: ATGAGGATGAAAAAGAGAAAACATTTAGTACTTCTGTTACTTCACGACAG GGAACTGCACAGCGTCCAGAAATACATCTTGTATCATGGAAAAATGATGAG
genomic: ATGAGGATGAAAAAGAGAAAACATTTAGTACTTCTGTTACTTCACGACAGgtaatcatca ... aattttgcagGGAACTGCACAGCGTCCAGAAATACATCTTGTATCATGGAAAAATGATGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGGGGTTGCTCCATTTGGTGACCTTTTAGTCGTACTTGCCTATATTCCTGATGAGGATGAAAAAGAGAAAACATTTAGTACTTCTGTTACTTCACGACAGgtaatcatcacatctctgaatgtctgttacatctgcattgcataccatgtacctttgcttctaaaataatgcttctgacttctgagattgatgttcctgttatgtttctaaaattttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA