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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATGGTAATTGATGACCGACTTAATGTTTGGGATGATAAAGATCAACACAGAGTTCATGTCGTCCCTGCATATATTCCATACTATGCTCCACAAGCGGAGgtacttattattttattactctgtattttgtgttgaacatatacccattatggaatgatatgtatttctataaattttag

Basic information

species Zea mays
transcript GRMZM2G039650_T02
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G039650_T02 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os01g63820.1 (Oryza sativa), 5'ss of exon 4
CATGGTAATTGATGACCGACTTAATGTTTGGGATGATAAAGATCAACACAGAGTTCATGTCGTCCCTGCATATATTCCATACTATGCTCCACAAGCGGAGgtacttatt---attttattactc-tgtattttgtgttgaacatatacccattatggaatgatatgtatttctataaattttag
|||||||||||||||||||||  | ||||||||||| || |||||||   |||||||||| ||||| ||||||| |||||| ||||| |||||||| |||||| |||||   |||||||| ||      |||| || | ||||    | |||| ||||          | | |  | |||||||
CATGGTAATTGATGACCGACTGCAGGTTTGGGATGAGAAGGATCAACCTCGAGTTCATGTTGTCCCAGCATATACTCCATATTATGCCCCACAAGCTGAGgtatttatttgtattttattgcttacactttttttggtcaacaatatctcattctggaccc-------tgtttgcatattttag