1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GGAAGGTTTGGCGGTTGGAAGAAACTGGAGGTAGTATTATTGGTGGAACCATCAAGACAATTCAGGAGAGGAGCAAGAATCCAAAACCACCGAGGGATGCgtaagagattgatgcattttctttttgttccgttaattggctgttctgccatattgatctgttttaacctcttttag
species | Zea mays |
transcript | GRMZM2G039396_T01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: ATCAAGACAATTCAGGAGAGGAGCAAGAATCCAAAACCACCGAGGGATGC CCGCCTTCCGAAGCCAAAAGGGCAGACAGTTGCATCTTTCAGGAAGGGTCTEST: gi|78079002|gb|DV507414.1|DV507414
genomic: ATCAAGACAATTCAGGAGAGGAGCAAGAATCCAAAACCACCGAGGGATGCgtaagagatt ... cctcttttagCCGCCTTCCGAAGCCAAAAGGGCAGACAGTTGCATCTTTCAGGAAGGGTCT
EST: ATCAAGACAATTCAGGAGAGGAGCAAGAATCCAAAACCACCGAGGGATGC CCGCCTTCCGAAGCCAAAAGGGCAGACAGTTGCATCTTTCAGGAAGGGTCTEST: gi|213183994|gb|FM183521.1|FM183521
genomic: ATCAAGACAATTCAGGAGAGGAGCAAGAATCCAAAACCACCGAGGGATGCgtaagagatt ... cctcttttagCCGCCTTCCGAAGCCAAAAGGGCAGACAGTTGCATCTTTCAGGAAGGGTCT
EST: ATCAAGACAATTCAGGAGAGGAGCAAGAATCCAAAACCACCGAGGGATGC CCGCCTTCCGAAGCCAAAAGGGCAGACAGTTGCATCTTTCAGGAAGGGTCTEST: gi|78087541|gb|DV515934.1|DV515934
genomic: ATCAAGACAATTCAGGAGAGGAGCAAGAATCCAAAACCACCGAGGGATGCgtaagagatt ... cctcttttagCCGCCTTCCGAAGCCAAAAGGGCAGACAGTTGCATCTTTCAGGAAGGGTCT
EST: TCAAGACAATTCAGGAGAGGAGCAAGAATCCAAAACCATCCGAGGGATGC CCCGCCTTCCGAAGTCAAAAGG
genomic: TCAAGACAATTCAGGAGAGGAGCAAGAATCCAAAACCA-CCGAGGGATGCgtaagagatt ... cctcttttagCC-GCCTTCCGAAGCCAAAAGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGAAGGTTTGGCGGTTGGAAGAAACTGGAGGTAGTATTATTGGTGGAACCATCAAGACAATTCAGGAGAGGAGCAAGAATCCAAAACCACCGAGGGATGCgtaagagattgatgcattttctttttgttccgttaattggctgttctgccatattgatctgttttaacctcttttag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA