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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTCTTGTTGAGTTGGCTGAGCTCCAAGATCGTGAGGTAGGAGATGGAACTACTTCCGTTGTCATCATAGCGGCAGAGTTACTCAAGgtaattagtctttcacctttttcactattgtgaattaccctacctgttttcagctgcacgtgcactaacaagattttttcttattgtcag

Basic information

species Zea mays
transcript GRMZM2G039263_T01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G039263_T02 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os04g46620.1 (Oryza sativa), 5'ss of exon 4
GTTCTTGTTGAGTTGGCTGAGCTCCAAGATCGTGAGGTAGGAGATGGAACTACTTCCGTTGTCATCATAGCGGCAGAGTTACTCAAGgtaatta------gtctt----tcacctttttcactattgtgaattaccctacctgttttcagctgcacgtgcactaacaagattttttcttattgtcag
||||||||||||||||||||||| |||||  | ||||| ||||||||||| || || ||||| || ||||| ||||| || || |||||||| |      |  ||    |||   |||||     | || |||  ||||||  | |  |  ||||  |     |      ||||||||| ||  |||
GTTCTTGTTGAGTTGGCTGAGCTTCAAGACAGAGAGGTGGGAGATGGAACGACATCTGTTGTGATAATAGCCGCAGAATTGCTAAAGgtaatgaaatggagctttcgtgtcagtcttttcttccctatgtatttgcctaccattctaaatatgcatttatgacactct--ttttttctttttaccag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211378059|gb|FL215190.1|FL215190
EST:     TAGGAGATGGAACTACTTCCGTTGTCATCATAGCGGCMGAGTTACTCAAG                         AGAGGCAATGATCTTGTGAAGAATAAGATCCATCCAACCTCTATAATCAGT
genomic: TAGGAGATGGAACTACTTCCGTTGTCATCATAGCGGCAGAGTTACTCAAGgtaattagtc ... ttattgtcagAGAGGCAATGATCTTGTGAAGAATAAGATCCATCCAACCTCTATAATCAGT
EST: gi|211243917|gb|FL215137.1|FL215137
EST:     TAGGAGATGGAACTACTTCCGTTGTCATCATAGCGGCAGATTTACTCAAG                         AGAGGCAATGATCTTGTGAAGAATAAGATCCATCCAACCTCTATAATCAGT
genomic: TAGGAGATGGAACTACTTCCGTTGTCATCATAGCGGCAGAGTTACTCAAGgtaattagtc ... ttattgtcagAGAGGCAATGATCTTGTGAAGAATAAGATCCATCCAACCTCTATAATCAGT
EST: gi|211250615|gb|FL215178.1|FL215178
EST:     TAGGAGATGGAACTACTTCCGTTGTCATCATAGCGGCAGAGTTACTCAAG                         AGAGGCAATGATCTTGTGAAGAATAAGATCCATCCAACCTCTATAATCAGT
genomic: TAGGAGATGGAACTACTTCCGTTGTCATCATAGCGGCAGAGTTACTCAAGgtaattagtc ... ttattgtcagAGAGGCAATGATCTTGTGAAGAATAAGATCCATCCAACCTCTATAATCAGT
EST: gi|211380719|gb|FL215213.1|FL215213
EST:     TAGGAGATGGAACTACTTCCGTTGTCATCATAGCGGCAGAGTTACTCAAG                         AGAGGCAATGATCTTGTGAAGAATAAGATCCATCCAACCTCTATAATCAGT
genomic: TAGGAGATGGAACTACTTCCGTTGTCATCATAGCGGCAGAGTTACTCAAGgtaattagtc ... ttattgtcagAGAGGCAATGATCTTGTGAAGAATAAGATCCATCCAACCTCTATAATCAGT
EST: gi|211383349|gb|FL215222.1|FL215222
EST:     TAGGAGATGGAACTACTTCCGTTGTCATCATAGCGGCAGAGTTACTCMAG                         ARGAGGCAATGATCTTGTGAAGAATAAGATCCATCCAA
genomic: TAGGAGATGGAACTACTTCCGTTGTCATCATAGCGGCAGAGTTACTCAAGgtaattagtc ... ttattgtcagA-GAGGCAATGATCTTGTGAAGAATAAGATCCATCCAA
EST: gi|211246157|gb|FL215157.1|FL215157
EST:     TAGGAGATGGAACTACTTCCGTTGTCATCATAGCGGCAGAGTTACTCAAG                         AGAGGCAATGATCTTGTGAAGAATAAGATCCATC
genomic: TAGGAGATGGAACTACTTCCGTTGTCATCATAGCGGCAGAGTTACTCAAGgtaattagtc ... ttattgtcagAGAGGCAATGATCTTGTGAAGAATAAGATCCATC
EST: gi|211250617|gb|FL215180.1|FL215180
EST:     TAGGAGATGGAACTACTTCCGTTGTCATCATAGCGGCAGAGTTACTCAAG                         AGAGGCAATGATCTTGTGAAGAATAAGATCCATCCAACCTCTATAATCAGT
genomic: TAGGAGATGGAACTACTTCCGTTGTCATCATAGCGGCAGAGTTACTCAAGgtaattagtc ... ttattgtcagAGAGGCAATGATCTTGTGAAGAATAAGATCCATCCAACCTCTATAATCAGT
EST: gi|211380718|gb|FL215212.1|FL215212
EST:     TAGGAGATGGAACTACTTCCGTTGTCATCATAGCGGCAGAGTTACTCAAG                         AGAGGCAATGATCTTGTGAAGAATAANATCCATCCAACCTCTATAATCAGT
genomic: TAGGAGATGGAACTACTTCCGTTGTCATCATAGCGGCAGAGTTACTCAAGgtaattagtc ... ttattgtcagAGAGGCAATGATCTTGTGAAGAATAAGATCCATCCAACCTCTATAATCAGT
EST: gi|149010855|gb|EE042239.2|EE042239
EST:     TAGGAGATGGAACTACTTCCGTTGTCATCATAGCGGCAGAGTTACTCAAG                         AGAGGCAATGATCTTGTGAAGAATAAGATCCATCCAACCTCTATAATCAGT
genomic: TAGGAGATGGAACTACTTCCGTTGTCATCATAGCGGCAGAGTTACTCAAGgtaattagtc ... ttattgtcagAGAGGCAATGATCTTGTGAAGAATAAGATCCATCCAACCTCTATAATCAGT
EST: gi|211250616|gb|FL215179.1|FL215179
EST:     TAGGAGATGGAACTACTTCCGTTGTCATCATAGCGGCAGAGTTACTCAAG                         AGAGGCAATGATCTTGTGAAGAATAAAGATYCATCCAACCTCTATAATCAG
genomic: TAGGAGATGGAACTACTTCCGTTGTCATCATAGCGGCAGAGTTACTCAAGgtaattagtc ... ttattgtcagAGAGGCAATGATCTTGTGAAGAATAA-GATCCATCCAACCTCTATAATCAG
EST: gi|211248384|gb|FL215161.1|FL215161
EST:     TAGGAGATGGAACTACTTCCGTTGTCATCATAGCGGCAGAGTTACTCAAG                         AGAGGCAATGATCTTGTGAAGAATAAGATCCATCCAACCTCTATAATCAGT
genomic: TAGGAGATGGAACTACTTCCGTTGTCATCATAGCGGCAGAGTTACTCAAGgtaattagtc ... ttattgtcagAGAGGCAATGATCTTGTGAAGAATAAGATCCATCCAACCTCTATAATCAGT
EST: gi|211250625|gb|FL215188.1|FL215188
EST:     TAGGAGATGGAACTACTTCCGTTGTCATCATAGCGGCAGAGTTACTCAAG                         AGAGGCAATGATCTTGTGAAGAATAAGATCCATCCAACCTCTATAATCAGT
genomic: TAGGAGATGGAACTACTTCCGTTGTCATCATAGCGGCAGAGTTACTCAAGgtaattagtc ... ttattgtcagAGAGGCAATGATCTTGTGAAGAATAAGATCCATCCAACCTCTATAATCAGT
EST: gi|211378064|gb|FL215195.1|FL215195
EST:     GGAGATGGAACTACTTNCCGTTGTCATCATAGCGGCAGAAGTAACTCA-G                         AGAGGCAATGATCTTTGTGAAGAA
genomic: GGAGATGGAACTACTT-CCGTTGTCATCATAGCGGCAGA-GTTACTCAAGgtaattagtc ... ttattgtcagAGAGGCAATGATCTT-GTGAAGAA
EST: gi|211248396|gb|FL215173.1|FL215173
EST:     TAGGAGATGGAACTACTTCCGTTGTCATCATAGCGGCAGARTTACTCAAG                         AGAGGCAATGATCTTGTGAAGAATAAGATCCATCCAA
genomic: TAGGAGATGGAACTACTTCCGTTGTCATCATAGCGGCAGAGTTACTCAAGgtaattagtc ... ttattgtcagAGAGGCAATGATCTTGTGAAGAATAAGATCCATCCAA
EST: gi|211243918|gb|FL215138.1|FL215138
EST:     TAGGAGATGGAACTACTTCCGTTGTCATCATAGCGGCAGAGTTACTCAAG                         AGAGGCAATGATCTTGTGAAGAATAAGATCCATCCAACCTCTATAATCAGT
genomic: TAGGAGATGGAACTACTTCCGTTGTCATCATAGCGGCAGAGTTACTCAAGgtaattagtc ... ttattgtcagAGAGGCAATGATCTTGTGAAGAATAAGATCCATCCAACCTCTATAATCAGT
EST: gi|211383350|gb|FL215223.1|FL215223
EST:     TAGGAGATGGAACTACTTCCGTTGTCATCATAGCGGCAGAGTTACTCAAG                         AGAGGCAATGATCTTGTGAAGAATAAGATCCATCCAACCTCTATAATCAGT
genomic: TAGGAGATGGAACTACTTCCGTTGTCATCATAGCGGCAGAGTTACTCAAGgtaattagtc ... ttattgtcagAGAGGCAATGATCTTGTGAAGAATAAGATCCATCCAACCTCTATAATCAGT
EST: gi|211246150|gb|FL215150.1|FL215150
EST:     TAGGAGATGGAACTACTTCCGTTGTCATCATAGCGGCAGAGTTACYCAAG                         AGAGGCAATGATCTTGTGAAGAATAAGATCCATCCAA
genomic: TAGGAGATGGAACTACTTCCGTTGTCATCATAGCGGCAGAGTTACTCAAGgtaattagtc ... ttattgtcagAGAGGCAATGATCTTGTGAAGAATAAGATCCATCCAA
EST: gi|211490021|gb|FL368148.1|FL368148
EST:     TAGGAGATGGAACTACTTCCGTTGTCATCATAGCGGCAGAGTTACTCAAG                         AGAGGCAATGATCTTGTGAAGAATAAGATCCATCCAACCTCTATAATC
genomic: TAGGAGATGGAACTACTTCCGTTGTCATCATAGCGGCAGAGTTACTCAAGgtaattagtc ... ttattgtcagAGAGGCAATGATCTTGTGAAGAATAAGATCCATCCAACCTCTATAATC
EST: gi|211380720|gb|FL215214.1|FL215214
EST:     TAGGAGATGGAACTACTTCCGTTGTCATCATAGCGGCAGAGTTACTCAAG                         AGAGGCAATGATCTTGTGAAGAATAAGATCCATCCAACCTCTATAATCAGT
genomic: TAGGAGATGGAACTACTTCCGTTGTCATCATAGCGGCAGAGTTACTCAAGgtaattagtc ... ttattgtcagAGAGGCAATGATCTTGTGAAGAATAAGATCCATCCAACCTCTATAATCAGT
EST: gi|211250619|gb|FL215182.1|FL215182
EST:     TAGGAGATGGAACTACTTCCGTTGTCATCATAGCGGCAGAGTTACTCAAG                         AGAGGCAATGATCTTGTGAAGAATAAGATCCATCCAACCTCTATAATCAGT
genomic: TAGGAGATGGAACTACTTCCGTTGTCATCATAGCGGCAGAGTTACTCAAGgtaattagtc ... ttattgtcagAGAGGCAATGATCTTGTGAAGAATAAGATCCATCCAACCTCTATAATCAGT
EST: gi|211246155|gb|FL215155.1|FL215155
EST:     TAGGAGATGGAACTACTTCCGTTGTCATCATAGCGGCAGAGTTACTCAAG                         AGAGGCAATGATCTTGTGAAGAATAANATCCATCCAACCTCTATAATCAG
genomic: TAGGAGATGGAACTACTTCCGTTGTCATCATAGCGGCAGAGTTACTCAAGgtaattagtc ... ttattgtcagAGAGGCAATGATCTTGTGAAGAATAAGATCCATCCAACCTCTATAATCAG
EST: gi|211378070|gb|FL215201.1|FL215201
EST:     TAGGAGATGGAACTACTTCCGTTGTCATCATAGCGGCAGAGTTACTCAAG                         AGAGGCAATGATCTTGTGAAGAATAAGATCCATCCAACCTCTATAATCAGT
genomic: TAGGAGATGGAACTACTTCCGTTGTCATCATAGCGGCAGAGTTACTCAAGgtaattagtc ... ttattgtcagAGAGGCAATGATCTTGTGAAGAATAAGATCCATCCAACCTCTATAATCAGT
EST: gi|211380714|gb|FL215208.1|FL215208
EST:     TAGGAGATGGAACTACTTCCGTTGTCATCATAGCGGCAGAGTTACTCAAG                         AGAGGCAATGATCTTGTGAAGAATAAGATCCATCCAACCTCTATAATCAGT
genomic: TAGGAGATGGAACTACTTCCGTTGTCATCATAGCGGCAGAGTTACTCAAGgtaattagtc ... ttattgtcagAGAGGCAATGATCTTGTGAAGAATAAGATCCATCCAACCTCTATAATCAGT
EST: gi|211243914|gb|FL215134.1|FL215134
EST:     TAGGAGATGGAACTACTTCCGTTGTCATCATAGCGGCAGAGTTACTCAAG                         AGAGGCAATGATCTTGTGAAGAATAAGATCCATCCAACCTCTATAATCAGT
genomic: TAGGAGATGGAACTACTTCCGTTGTCATCATAGCGGCAGAGTTACTCAAGgtaattagtc ... ttattgtcagAGAGGCAATGATCTTGTGAAGAATAAGATCCATCCAACCTCTATAATCAGT
EST: gi|211243916|gb|FL215136.1|FL215136
EST:     TAGGAGATGGAACTACTTCCGTTGTCATCATAGCGGCAGAGTTACTCAAG                         AGAGGCAATGATCTTGTGAAGAATAAGATCCATC
genomic: TAGGAGATGGAACTACTTCCGTTGTCATCATAGCGGCAGAGTTACTCAAGgtaattagtc ... ttattgtcagAGAGGCAATGATCTTGTGAAGAATAAGATCCATC
EST: gi|211246156|gb|FL215156.1|FL215156
EST:     TAGGAGATGGAACTACTTCCGTTGTCATCATAGCGGCAGAGTTACTCAAG                         AGAGGCAATGATCTTGTGAAGAATAAGATCCATCCAACCTCTATAATCAGT
genomic: TAGGAGATGGAACTACTTCCGTTGTCATCATAGCGGCAGAGTTACTCAAGgtaattagtc ... ttattgtcagAGAGGCAATGATCTTGTGAAGAATAAGATCCATCCAACCTCTATAATCAGT
EST: gi|21331562|gb|BQ486943.1|BQ486943
EST:     TAGGAGATGGAACTACTTCCGTTGTCATCATAGCGGCAGAGTTACTCAAG                         AGAGGCAATGATCTTGTGAAGAATAAGATCCATCCAACCTCTATAATCAGT
genomic: TAGGAGATGGAACTACTTCCGTTGTCATCATAGCGGCAGAGTTACTCAAGgtaattagtc ... ttattgtcagAGAGGCAATGATCTTGTGAAGAATAAGATCCATCCAACCTCTATAATCAGT
EST: gi|211250620|gb|FL215183.1|FL215183
EST:     TAGGAGATGGAACTACTTCCGTTGTCATCATAGCGGCAGAGTTACTCAAG                         AGAGGCAATGATCTTGTGAAGAATAAGATC
genomic: TAGGAGATGGAACTACTTCCGTTGTCATCATAGCGGCAGAGTTACTCAAGgtaattagtc ... ttattgtcagAGAGGCAATGATCTTGTGAAGAATAAGATC
EST: gi|211248391|gb|FL215168.1|FL215168
EST:     TAGGAGATGGAACTACTTCCGTTGTCATCATAGCGGCAGAGTTACTCAAG                         AGAGGCAATGATCTTGTGAAGAATAAGATCCATCCAACCTCTATAATCAGT
genomic: TAGGAGATGGAACTACTTCCGTTGTCATCATAGCGGCAGAGTTACTCAAGgtaattagtc ... ttattgtcagAGAGGCAATGATCTTGTGAAGAATAAGATCCATCCAACCTCTATAATCAGT
EST: gi|211378072|gb|FL215203.1|FL215203
EST:     TAGGAGATGGAACTACTTCCGTTGTCATCATAGCGGCAGAGTTACTCAAG                         AGAGGCAATGATCTTGTGAAGAATAAGATCCATCCAACCTCTATAATCAGT
genomic: TAGGAGATGGAACTACTTCCGTTGTCATCATAGCGGCAGAGTTACTCAAGgtaattagtc ... ttattgtcagAGAGGCAATGATCTTGTGAAGAATAAGATCCATCCAACCTCTATAATCAGT
EST: gi|211243920|gb|FL215140.1|FL215140
EST:     TAGGAGATGGAACTACTTCCGTTGTCATCATAGCGGCAGAGTTACTCAAG                         AGAGGCAATGATCTTGTGAAGAATAAGATCCATCCAACCTCTATAATCAGT
genomic: TAGGAGATGGAACTACTTCCGTTGTCATCATAGCGGCAGAGTTACTCAAGgtaattagtc ... ttattgtcagAGAGGCAATGATCTTGTGAAGAATAAGATCCATCCAACCTCTATAATCAGT
EST: gi|19058770|gb|BM737437.1|BM737437
EST:     TAGGAGATGGAACTACTTCCGTTGTCATCATAGCGGCAGAGTTACTCAAG                         AGAGGCAATGATCTTGTGAAGAATAAGATCCATCCAACCTCTATAATCAGT
genomic: TAGGAGATGGAACTACTTCCGTTGTCATCATAGCGGCAGAGTTACTCAAGgtaattagtc ... ttattgtcagAGAGGCAATGATCTTGTGAAGAATAAGATCCATCCAACCTCTATAATCAGT
EST: gi|211250611|gb|FL215174.1|FL215174
EST:     TAGGAGATGGAACTACTTCCGTTGTCATCATAGCGGCAGAGTTACTCAAG                         AGAGGCAATGATCTTGTGAAGAATAAGATCCATCCAACCTCTATAATCAGT
genomic: TAGGAGATGGAACTACTTCCGTTGTCATCATAGCGGCAGAGTTACTCAAGgtaattagtc ... ttattgtcagAGAGGCAATGATCTTGTGAAGAATAAGATCCATCCAACCTCTATAATCAGT
EST: gi|211243922|gb|FL215142.1|FL215142
EST:     TAGGAGATGGAACTACTTCCGTTGTCATCATAGCGGCAGAGTTACTCAAG                         AGAGGCAATGATCTTGTGAAGAATAAGATCCATCCAACCTCTATAATCAGT
genomic: TAGGAGATGGAACTACTTCCGTTGTCATCATAGCGGCAGAGTTACTCAAGgtaattagtc ... ttattgtcagAGAGGCAATGATCTTGTGAAGAATAAGATCCATCCAACCTCTATAATCAGT
EST: gi|211380723|gb|FL215217.1|FL215217
EST:     TAGGAGATGGAACTACTTCCGTTGTCATCATAGCGGCAGAGTTACTCAAG                         AGAGGCAATGATCTTGTGAAGAATAAGATCCATCCAACCTCTATAATCAGT
genomic: TAGGAGATGGAACTACTTCCGTTGTCATCATAGCGGCAGAGTTACTCAAGgtaattagtc ... ttattgtcagAGAGGCAATGATCTTGTGAAGAATAAGATCCATCCAACCTCTATAATCAGT
EST: gi|211378069|gb|FL215200.1|FL215200
EST:     TAGGAGATGGAACTACTTCCGTTGTCATCATAGCGGCAGAGTTACTCAAG                         AGAGGCAATGATCTTGTGAAGAATAAGATCCATCCAACCTCTATAATCAGT
genomic: TAGGAGATGGAACTACTTCCGTTGTCATCATAGCGGCAGAGTTACTCAAGgtaattagtc ... ttattgtcagAGAGGCAATGATCTTGTGAAGAATAAGATCCATCCAACCTCTATAATCAGT
EST: gi|149083358|gb|EE172656.2|EE172656
EST:     TAGGAGATGGAACTACTTCCGTTGTCATCATAGCGGCAGAGTTACTCAAG                         AGAGGCAATGATCTTGTGAAGAATAAGATCCATCCAACCTCTATAATCAGT
genomic: TAGGAGATGGAACTACTTCCGTTGTCATCATAGCGGCAGAGTTACTCAAGgtaattagtc ... ttattgtcagAGAGGCAATGATCTTGTGAAGAATAAGATCCATCCAACCTCTATAATCAGT
EST: gi|149074901|gb|EE163349.2|EE163349
EST:     TAGGAGATGGAACTACTTCCGTTGTCATCATAGCGGCAGAGTTACTCAAG                         AGAGGCAATGATCTTGTGAAGAATAAGATCCATCCAACCTCTATAATCAGT
genomic: TAGGAGATGGAACTACTTCCGTTGTCATCATAGCGGCAGAGTTACTCAAGgtaattagtc ... ttattgtcagAGAGGCAATGATCTTGTGAAGAATAAGATCCATCCAACCTCTATAATCAGT
EST: gi|211383347|gb|FL215220.1|FL215220
EST:     TAGGAGATGGAACTACTTCCGTTGTCATCATAGCGGCAGAGTTACTCAAG                         AGAGGCAATGATCTTGTGAAGAATAAGATCCATCCAACCTCTATAATCAGT
genomic: TAGGAGATGGAACTACTTCCGTTGTCATCATAGCGGCAGAGTTACTCAAGgtaattagtc ... ttattgtcagAGAGGCAATGATCTTGTGAAGAATAAGATCCATCCAACCTCTATAATCAGT
EST: gi|211246147|gb|FL215147.1|FL215147
EST:     TAGGAGATGGAACTACTTCCGTTGTCATCATAGCGGCAGAGTTACTCAAG                         AGAGGCAATGATCTTGTGAAGAATAAGATCCATCCAACCTCTATAATCAGT
genomic: TAGGAGATGGAACTACTTCCGTTGTCATCATAGCGGCAGAGTTACTCAAGgtaattagtc ... ttattgtcagAGAGGCAATGATCTTGTGAAGAATAAGATCCATCCAACCTCTATAATCAGT
EST: gi|211380721|gb|FL215215.1|FL215215
EST:     TAGGAGATGGAACTACTTCCGTTGTCATCATAGCGGCAGAGTTACTCAAG                         AGAGGCAATGATCTTGTGAAGAATAAGATCCATC
genomic: TAGGAGATGGAACTACTTCCGTTGTCATCATAGCGGCAGAGTTACTCAAGgtaattagtc ... ttattgtcagAGAGGCAATGATCTTGTGAAGAATAAGATCCATC
EST: gi|149000083|gb|EE037198.2|EE037198
EST:     TAGGAGATGGAACTACTTCCGTTGTCATCATAGCGGCAGAGTTACTCAAG                         AGAGGCAATGATCTTGTGAAGAATAAGATCCATCCAACCTCTATAATCAGT
genomic: TAGGAGATGGAACTACTTCCGTTGTCATCATAGCGGCAGAGTTACTCAAGgtaattagtc ... ttattgtcagAGAGGCAATGATCTTGTGAAGAATAAGATCCATCCAACCTCTATAATCAGT
EST: gi|211248390|gb|FL215167.1|FL215167
EST:     TAGGAGATGGAACTACTTCCGTTGTCATCATAGCGGCAGAGTTACTCAAG                         AGAGGCAATGATCTTGTGAAGAATAAGATCCATCCAACCTCTATAATCAGT
genomic: TAGGAGATGGAACTACTTCCGTTGTCATCATAGCGGCAGAGTTACTCAAGgtaattagtc ... ttattgtcagAGAGGCAATGATCTTGTGAAGAATAAGATCCATCCAACCTCTATAATCAGT
EST: gi|60396669|gb|DN229537.1|DN229537
EST:     TAGGAGATGGAACTACTTCCGTTGTCATCATAGCGGCAGAGTTACTCAAG                         AGAGGCAATGATCTTGTGAAGAATAAGATCCATCCAACCTCTATAATCAGT
genomic: TAGGAGATGGAACTACTTCCGTTGTCATCATAGCGGCAGAGTTACTCAAGgtaattagtc ... ttattgtcagAGAGGCAATGATCTTGTGAAGAATAAGATCCATCCAACCTCTATAATCAGT
EST: gi|211250624|gb|FL215187.1|FL215187
EST:     TAGGAGATGGAACTACTTCCGTTGTCATCATAGCGGCAGAGTTACTCAAG                         AGAGGCAATGATCTTGTGAAGAATAAGATCCATCCAACCTCTATAATCAGT
genomic: TAGGAGATGGAACTACTTCCGTTGTCATCATAGCGGCAGAGTTACTCAAGgtaattagtc ... ttattgtcagAGAGGCAATGATCTTGTGAAGAATAAGATCCATCCAACCTCTATAATCAGT
EST: gi|211250622|gb|FL215185.1|FL215185
EST:     TAGGAGATGGAACTACTTCCGTTGTCATCATAGCGGCAGAGTTACTCAAG                         AGAGGCAATGATCTTGTGAAGAATAAGATCCATCCAACCTCTATAATCAGT
genomic: TAGGAGATGGAACTACTTCCGTTGTCATCATAGCGGCAGAGTTACTCAAGgtaattagtc ... ttattgtcagAGAGGCAATGATCTTGTGAAGAATAAGATCCATCCAACCTCTATAATCAGT
EST: gi|211378065|gb|FL215196.1|FL215196
EST:     TAGGAGATGGAACTACTTCCGTTGTCATCATAGCGGCAGAGTTACTCAAG                         AGAGGCAATGATCTTGTGAAGAATAAGATCCATCCAACCTCTATAATCAGT
genomic: TAGGAGATGGAACTACTTCCGTTGTCATCATAGCGGCAGAGTTACTCAAGgtaattagtc ... ttattgtcagAGAGGCAATGATCTTGTGAAGAATAAGATCCATCCAACCTCTATAATCAGT
EST: gi|211243915|gb|FL215135.1|FL215135
EST:     TAGGAGATGGAACTACTTCCGTTGTCATCATAGCGGCAGAGTTACTCAAG                         AGAGGCAATGATCTTGTGAAGAATAAGATCCATCCAACCTCTATAATCAGT
genomic: TAGGAGATGGAACTACTTCCGTTGTCATCATAGCGGCAGAGTTACTCAAGgtaattagtc ... ttattgtcagAGAGGCAATGATCTTGTGAAGAATAAGATCCATCCAACCTCTATAATCAGT
EST: gi|211241685|gb|FL215127.1|FL215127
EST:     TAGGAGATGGAACTACTTCCGTTGTCATCATAGCGGCAGAGTTACTCAAG                         AGAGGCAATGATCTTGTGAAGAATAAGATCCATCCAACCTCTATAATCAGT
genomic: TAGGAGATGGAACTACTTCCGTTGTCATCATAGCGGCAGAGTTACTCAAGgtaattagtc ... ttattgtcagAGAGGCAATGATCTTGTGAAGAATAAGATCCATCCAACCTCTATAATCAGT
EST: gi|33092579|gb|CF052573.1|CF052573
EST:     TAGGAGATGGAACTACTTCCGTTGTCATCATAGCGGCAGAGTTACTCAAG                         AGAGGCAATGATCTTGTGAAGAATAAGATCCATCCAACCTCTATAATCAGT
genomic: TAGGAGATGGAACTACTTCCGTTGTCATCATAGCGGCAGAGTTACTCAAGgtaattagtc ... ttattgtcagAGAGGCAATGATCTTGTGAAGAATAAGATCCATCCAACCTCTATAATCAGT
EST: gi|211248395|gb|FL215172.1|FL215172
EST:     TAGGAGATGGAACTACTTCCGTTGTCATCATAGCGGCAGAGTTACTCAAG                         AGAGGCAATGATCTTGTGAAGAATAAGATTCCATCCAACCTCTATAATCAG
genomic: TAGGAGATGGAACTACTTCCGTTGTCATCATAGCGGCAGAGTTACTCAAGgtaattagtc ... ttattgtcagAGAGGCAATGATCTTGTGAAGAATAAGAT-CCATCCAACCTCTATAATCAG
EST: gi|211250623|gb|FL215186.1|FL215186
EST:     TAGGAGATGGAACTACTTCCGTTGTCATCATAGCGGCAGAGTTACTCAAG                         AGAGGCAATGATCTTGTGAAGAATAAGATCCATCCAACCTCTATAATCAGT
genomic: TAGGAGATGGAACTACTTCCGTTGTCATCATAGCGGCAGAGTTACTCAAGgtaattagtc ... ttattgtcagAGAGGCAATGATCTTGTGAAGAATAAGATCCATCCAACCTCTATAATCAGT
EST: gi|211243912|gb|FL215132.1|FL215132
EST:     TAGGAGATGGAACTACTTCCGTTGTCATCATAGCGGCAGAGTTACTCAAG                         AGAGGCAATGATCTTGTGAAGAATAAGATCCATCCAACCTCTATAATCAGT
genomic: TAGGAGATGGAACTACTTCCGTTGTCATCATAGCGGCAGAGTTACTCAAGgtaattagtc ... ttattgtcagAGAGGCAATGATCTTGTGAAGAATAAGATCCATCCAACCTCTATAATCAGT
EST: gi|211248385|gb|FL215162.1|FL215162
EST:     GGAGATGGAACTAACTTCCGTTGTCATCATAAGCGGCAGAGTTACTCAAG                         AGAGGCAATGATCTTGTGAAGAATAAGATCCATCCAACCTCTATAATCAGT
genomic: GGAGATGGAACTA-CTTCCGTTGTCATCATA-GCGGCAGAGTTACTCAAGgtaattagtc ... ttattgtcagAGAGGCAATGATCTTGTGAAGAATAAGATCCATCCAACCTCTATAATCAGT
EST: gi|71437844|gb|DR818894.1|DR818894
EST:     TAGGAGATGGAACTACTTCCGTTGTCATCATAGCGGCAGAGTTACTCAAG                         AGAGGCAATGATCTTGTGAAGAATAAGATCCATCCAACCTCTATAATCAGT
genomic: TAGGAGATGGAACTACTTCCGTTGTCATCATAGCGGCAGAGTTACTCAAGgtaattagtc ... ttattgtcagAGAGGCAATGATCTTGTGAAGAATAAGATCCATCCAACCTCTATAATCAGT
EST: gi|211243910|gb|FL215130.1|FL215130
EST:     TAGGAGATGGAACTACTTCCGTTGTCATCATAGCGGCAGAGTTACTCAAG                         AGAGGCAATGATCTTGTGAAGAATAAGATCCATCCAACCTCTATAATCAGT
genomic: TAGGAGATGGAACTACTTCCGTTGTCATCATAGCGGCAGAGTTACTCAAGgtaattagtc ... ttattgtcagAGAGGCAATGATCTTGTGAAGAATAAGATCCATCCAACCTCTATAATCAGT
EST: gi|211378067|gb|FL215198.1|FL215198
EST:     TAGGAGATGGAACTACTTCCGTTGTCATCATAGCGGCAGAGTTACTCAAG                         AGAGGCAATGATCTTGTGAAGAATAAGATCCATCCAACCTCTATAATCAGT
genomic: TAGGAGATGGAACTACTTCCGTTGTCATCATAGCGGCAGAGTTACTCAAGgtaattagtc ... ttattgtcagAGAGGCAATGATCTTGTGAAGAATAAGATCCATCCAACCTCTATAATCAGT
EST: gi|31557915|gb|CD527127.1|CD527127
EST:     TAGGAGATGGAACTACTTCCGTTGTCATCATAGCGGCAGAGTTACTCAAG                         AGAGGCAATGATCTTGTGAAGAATAAGATCCATCCAACCTCTATAATCAGT
genomic: TAGGAGATGGAACTACTTCCGTTGTCATCATAGCGGCAGAGTTACTCAAGgtaattagtc ... ttattgtcagAGAGGCAATGATCTTGTGAAGAATAAGATCCATCCAACCTCTATAATCAGT
EST: gi|211250612|gb|FL215175.1|FL215175
EST:     TAGGAGATGGAACTACTTCCGTTGTCATCATAGCGGCAGAGTTACTCAAG                         AGAGGCAATGATCTTGTGAAGAATAAGATCCATCCA
genomic: TAGGAGATGGAACTACTTCCGTTGTCATCATAGCGGCAGAGTTACTCAAGgtaattagtc ... ttattgtcagAGAGGCAATGATCTTGTGAAGAATAAGATCCATCCA
EST: gi|211250613|gb|FL215176.1|FL215176
EST:     TAGGAGATGGAACTACTTCCGTTGTCATCATAGCGGCAGAGTTACTCAAG                         AGAGGCAATGATCTTGTGAAGAATAAGATCCATCCAACCTCTATAATCAGT
genomic: TAGGAGATGGAACTACTTCCGTTGTCATCATAGCGGCAGAGTTACTCAAGgtaattagtc ... ttattgtcagAGAGGCAATGATCTTGTGAAGAATAAGATCCATCCAACCTCTATAATCAGT
EST: gi|211383348|gb|FL215221.1|FL215221
EST:     TAGGAGATGGAACTACTTCCGTTGTCATCATAGCGGCAGAGTTACTCAAG                         AGAGGCAATGATCTTGTGAAGAATAAGATCCATCCAACCTCTATAATCAGT
genomic: TAGGAGATGGAACTACTTCCGTTGTCATCATAGCGGCAGAGTTACTCAAGgtaattagtc ... ttattgtcagAGAGGCAATGATCTTGTGAAGAATAAGATCCATCCAACCTCTATAATCAGT
EST: gi|211383351|gb|FL215224.1|FL215224
EST:     TAGGAGATGGAACTACTTCCGTTGTCATCATAGCGGCAGAGTTACTCAAG                         AGAGGCAATGATCTTGTGAAGAATAAGATCCATCCAACCTCTATAATCAGT
genomic: TAGGAGATGGAACTACTTCCGTTGTCATCATAGCGGCAGAGTTACTCAAGgtaattagtc ... ttattgtcagAGAGGCAATGATCTTGTGAAGAATAAGATCCATCCAACCTCTATAATCAGT
EST: gi|211378068|gb|FL215199.1|FL215199
EST:     AGGAGATGGAAACTACTTCCGTTGTCATCATAGCGGCAGAGTTACTCAAG                         AGAGGCAATGATCTTGTGAAGAATAAGATCCATCCAACCTCTATAATCAGT
genomic: AGGAGATGGAA-CTACTTCCGTTGTCATCATAGCGGCAGAGTTACTCAAGgtaattagtc ... ttattgtcagAGAGGCAATGATCTTGTGAAGAATAAGATCCATCCAACCTCTATAATCAGT
EST: gi|211241686|gb|FL215128.1|FL215128
EST:     TAGGAGATGGAACTACTTCCGTTGTCATCATAGCGGCAGAGTTACTCAAG                         AGAGGCAATGATCTTGTGAAGAATAAGATCCATCCAACCTCTATAATCAGT
genomic: TAGGAGATGGAACTACTTCCGTTGTCATCATAGCGGCAGAGTTACTCAAGgtaattagtc ... ttattgtcagAGAGGCAATGATCTTGTGAAGAATAAGATCCATCCAACCTCTATAATCAGT
EST: gi|211241684|gb|FL215126.1|FL215126
EST:     TAGGAGATGGAACTACTTCCGTTGTCATCATAGCGGCAGAGTTACTCAAG                         AGAGGCAATGATCTTGTGAAGAATAAGATCCATCCAA
genomic: TAGGAGATGGAACTACTTCCGTTGTCATCATAGCGGCAGAGTTACTCAAGgtaattagtc ... ttattgtcagAGAGGCAATGATCTTGTGAAGAATAAGATCCATCCAA
EST: gi|211250614|gb|FL215177.1|FL215177
EST:     TAGGAGATGGAACTACTTCCGTTGTCATCATAGCGGCAGAGTTACTCAAG                         AGAGGCAATGATCTTGTGAAGAATAAGATCCATCCAACCTCTATAATCAGT
genomic: TAGGAGATGGAACTACTTCCGTTGTCATCATAGCGGCAGAGTTACTCAAGgtaattagtc ... ttattgtcagAGAGGCAATGATCTTGTGAAGAATAAGATCCATCCAACCTCTATAATCAGT
EST: gi|211378062|gb|FL215193.1|FL215193
EST:     TAGGAGATGGAACTACTTCCGTTGTCATCATAGCGGCAGAGTTACTCAAG                         AGAGGCAATGATCTTGTGAAGAATAAGATCCATCCAANCTCTATAATCAGT
genomic: TAGGAGATGGAACTACTTCCGTTGTCATCATAGCGGCAGAGTTACTCAAGgtaattagtc ... ttattgtcagAGAGGCAATGATCTTGTGAAGAATAAGATCCATCCAACCTCTATAATCAGT
EST: gi|211380713|gb|FL215207.1|FL215207
EST:     TAGGAGATGGAACTACTTCCGTTGTCATCAHAGCGGCAGAGTTACTCAAG                         AGAGGCAATGATCTTGTGAAGAATAAGATCCATCCAACCTCTATA
genomic: TAGGAGATGGAACTACTTCCGTTGTCATCATAGCGGCAGAGTTACTCAAGgtaattagtc ... ttattgtcagAGAGGCAATGATCTTGTGAAGAATAAGATCCATCCAACCTCTATA
EST: gi|211243913|gb|FL215133.1|FL215133
EST:     TAGGAGATGGAACTACTTCCGTTGTCATCATAGCGGCAGAGTTACTCAAG                         AGAGGCAATGATCTTGTGAAGAATAAGATCCATCCAACCTCTATAATCAGT
genomic: TAGGAGATGGAACTACTTCCGTTGTCATCATAGCGGCAGAGTTACTCAAGgtaattagtc ... ttattgtcagAGAGGCAATGATCTTGTGAAGAATAAGATCCATCCAACCTCTATAATCAGT
EST: gi|211248389|gb|FL215166.1|FL215166
EST:     TAGGAGATGGAACTACTTCCGTTGTCATCATAGCGGCAGAGTTACTCAAG                         AGAGGCAATGATCTTGTGAAGAATAAGATCCATCCAACCTCTATAATCAGT
genomic: TAGGAGATGGAACTACTTCCGTTGTCATCATAGCGGCAGAGTTACTCAAGgtaattagtc ... ttattgtcagAGAGGCAATGATCTTGTGAAGAATAAGATCCATCCAACCTCTATAATCAGT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 746

GTTCTTGTTGAGTTGGCTGAGCTCCAAGATCGTGAGGTAGGAGATGGAACTACTTCCGTTGTCATCATAGCGGCAGAGTTACTCAAGgtaattagtc ... ttattgtcagAGAGGCAATGATCTTGTGAAGAATAAGATCCATCCAACCTCTATAATCAGTGGCTACAGG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 305

GTTCTTGTTGAGTTGGCTGAGCTCCAAGATCGTGAGGTAGGAGATGGAACTACTTCCGTTGTCATCATAGCGGCAGAGTTACTCAAGgtaattagtc ... ttattgtcagAGAGGCAATGATCTTGTGAAGAATAAGATCCATCCAACCTCTATAATCAGTGGCTACAGG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 271

GTTCTTGTTGAGTTGGCTGAGCTCCAAGATCGTGAGGTAGGAGATGGAACTACTTCCGTTGTCATCATAGCGGCAGAGTTACTCAAGgtaattagtc ... ttattgtcagAGAGGCAATGATCTTGTGAAGAATAAGATCCATCCAACCTCTATAATCAGTGGCTACAGG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 238

GTTCTTGTTGAGTTGGCTGAGCTCCAAGATCGTGAGGTAGGAGATGGAACTACTTCCGTTGTCATCATAGCGGCAGAGTTACTCAAGgtaattagtc ... ttattgtcagAGAGGCAATGATCTTGTGAAGAATAAGATCCATCCAACCTCTATAATCAGTGGCTACAGG


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTTCTTGTTGAGTTGGCTGAGCTCCAAGATCGTGAGGTAGGAGATGGAACTACTTCCGTTGTCATCATAGCGGCAGAGTTACTCAAGgtaattagtctttcacctttttcactattgtgaattaccctacctgttttcagctgcacgtgcactaacaagattttttcttattgtcag

- - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - -  GGAGAT
- - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - GATGGA