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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGACAATGTTCCATCTGATTCTGTAACTGTTGGAAACAGTTCTTATAGCAAAATAGAAAGATCCATGGCCATTCTGAACACTTTCATCAGTTTCATAAAGgtacctcttcattttttattaagtttatgtggcttttgtttactggttgcaagtttaacactaacattttgatggcttgaataattatctcttgtgaatg...

Basic information

species Zea mays
transcript GRMZM2G038667_T03
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|160481641|gb|EY254473.1|EY254473
EST:     AAATAGAAAGATCCATGGCCATTCTGAACACTTTCATCAGTTTCATAAAG                         GTATCAATGCCAAGAAGCGACTTGATCATATTGACTGATCCTGGTTCAAAA
genomic: AAATAGAAAGATCCATGGCCATTCTGAACACTTTCATCAGTTTCATAAAGgtacctcttc ... aaccctgcagGTATCAATGCCAAGAAGCGACTTGATCATATTGACTGATCCTGGTTCAAAA
EST: gi|93017014|gb|EB642534.1|EB642534
EST:     AAATAGAAAGATCCATGGCCATTCTGAACACTTTCATCAGTTTCATAAAG                         GTATCAATGCCAAGAAGCGACTTGATCATATTGA
genomic: AAATAGAAAGATCCATGGCCATTCTGAACACTTTCATCAGTTTCATAAAGgtacctcttc ... aaccctgcagGTATCAATGCCAAGAAGCGACTTGATCATATTGA