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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTGTGTGCCTGCCACCCCCAACCGCGCCGAAGCGGCCTGACCATCTCGTGCTCGGCCCCGCCGCCGGACAGGACCGCCCCGACCGCCTACAGTGCCGAGgttagtactctcgctttggcaagctccatccatgctgaatttactgatctttatggaagctgcttagatcttagttcgagacatttcgggctgtctaggt...

Basic information

species Zea mays
transcript GRMZM2G038667_T02
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G038667_T03 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os06g37430.1 (Oryza sativa), 5'ss of exon 1
GGTGTGTGCCTGCCACCCCCAACCGCGCCGAAGC------GGCCTGACCATCTCGTGCTCGGCCCCGCCGCCGGACAGGACCGCCCCGACCGCCTACAGTGCCGAGgttagtactctcgctttggcaagctccatccatgctgaatttactgatctttatggaagctgcttagatcttagttcgagacatttcgggctgtctaggt---
      |||||||| || || |||||||||| ||      |||| || |  |||||||| |||||||||||||| ||||  |||||||||||||| ||||||| |||||        |    | |   |  |   |||| |    ||| ||| ||| |     |  ||||      || |   | | | ||| |      |  | |   
------TGCCTGCCTCCGCCCACCGCGCCGAGGCTGCCGCGGCCGGATCGCCTCGTGCTTGGCCCCGCCGCCGGCCAGGGACGCCCCGACCGCCTCCAGTGCCAAGgttttcttctccttcctcgtccgtactccccatcc---gtttgctgttctgtggcccaaatgctgctcggtttggatgtggcttttggcagaaccatgcttgc
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|149014738|gb|EE044419.2|EE044419
EST:     GCTCGGCCCCGCCGCCGGACAGGACCGCCCCGACCGCCTACAGTGCCGAG                         GACTTAGAGCTCTGAACAAGATTGGCATATCAAGTGAAGAGAACTATTCTG
genomic: GCTCGGCCCCGCCGCCGGACAGGACCGCCCCGACCGCCTACAGTGCCGAGgttagtactc ... cattgttcagGACTTAGAGCTCTGAACAAGATTGGCATATCAAGTGAAGAGAACTATTCTG
EST: gi|71449062|gb|DR830112.1|DR830112
EST:     GCTCGGCCCCGCCGCCGGACAGGACCGCCCCGACCGCCTACAGTGCCGAG                         GACTTAGAGCTCTGAACAAGATTGGCATATCAAGTGAAGAGAACTATTCTG
genomic: GCTCGGCCCCGCCGCCGGACAGGACCGCCCCGACCGCCTACAGTGCCGAGgttagtactc ... cattgttcagGACTTAGAGCTCTGAACAAGATTGGCATATCAAGTGAAGAGAACTATTCTG
EST: gi|148948173|gb|EC893688.2|EC893688
EST:     GCTCGGCCCCGCCGCCGGACAGGACCGCCCCGACCGCCTACAGTGCCGAG                         GACTTAGAGCTCTGAACAAGATTGGCATATCAAGTGAAGAGAACTATTCTG
genomic: GCTCGGCCCCGCCGCCGGACAGGACCGCCCCGACCGCCTACAGTGCCGAGgttagtactc ... cattgttcagGACTTAGAGCTCTGAACAAGATTGGCATATCAAGTGAAGAGAACTATTCTG
EST: gi|60396179|gb|DN229048.1|DN229048
EST:     GCTCGGCCCCGCCGCCGGACAGGACCGCCCCGACCGCCTACAGTGCCGAG                         GACTTAGAGCTCTGAACAAGATTGGCATATCAAGTGAAGAGAACTATTCTG
genomic: GCTCGGCCCCGCCGCCGGACAGGACCGCCCCGACCGCCTACAGTGCCGAGgttagtactc ... cattgttcagGACTTAGAGCTCTGAACAAGATTGGCATATCAAGTGAAGAGAACTATTCTG
EST: gi|148964028|gb|EE015172.2|EE015172
EST:     GCTCGGCCCCGCCGCCGGACAGGACCGCCCCGACCGCCTACAGTGCCGAG                         GACTTAGAGCTCTGAACAAGATTGGCATATCAAGTGAAGAGAACTATTCTG
genomic: GCTCGGCCCCGCCGCCGGACAGGACCGCCCCGACCGCCTACAGTGCCGAGgttagtactc ... cattgttcagGACTTAGAGCTCTGAACAAGATTGGCATATCAAGTGAAGAGAACTATTCTG