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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCAGACACTCTAGATCCTGCTCTGTTGCGTCCTGGTAGACTTGACAGGAAAATTGAGTTCCCTTTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTCCAAgtaagttggatctccaagagtctttctattttttctctctaaatcatcatttggagtgtcatttgagttctatatctttgtatcctccaacaacttctct...

Basic information

species Zea mays
transcript GRMZM2G038126_T01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G038126_T01 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os02g21970.1 (Oryza sativa), 5'ss of exon 4
GGCAGACACTCTAGATCCTGCTCTGTTGCGTCCTGGTAGACTTGACAGGAAAATTGAGTTCCCTTTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTCCAAgtaagttggatctccaagagtctttc-tattttttctctctaaatcatcatttgg-agtgtcatttgagttctatatctttgtatcctccaacaacttctct
||| || || ||||| ||||||||||| ||||| |||||| | ||||||||||| ||||||||| | ||||| || || ||||||||||||||||||||||||||||   | |        |     | | | | ||    |    || | |      ||    |||  |  || | |||| |||        || ||    
GGCGGATACCCTAGACCCTGCTCTGTTACGTCCAGGTAGATTGGACAGGAAAATCGAGTTCCCTCTTCCAGATCGTCGGCAGAAGAGGCTTGTTTTCCAAgtaagttttgtttttttttccccaaaatgtgtgtccttcgcaggatattactgactgatgggtattgtttggtagagctttatattgaaggttaagtttc--

upper sequence: GRMZM2G038126_T01 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA18G05730.1 (Glycine max), 5'ss of exon 4
-GGCAGACACTCTAGATCCTGCTCTGTTGCGTCCTGGTAGACTTGACAGGAAAATTGAGTTCCCTTTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTCCAAgtaagt----tggat-ctccaagagtctttctat---tttttctctctaaatcatcatttggagtgtcatttgagttctatatctttgtatcctccaacaacttctct---------------------------------------------------
  ||||||||  | || |||||||||||||||||||| || |||||  | |||||||||||||||||||| ||  | || || |||||||| || || || | ||||    ||| |  |  |   |  || ||     | ||    ||| | | |  | ||   || |  |||||   |  | ||  ||| |  |      |    | |                                                   
GAGCAGACACCTTGGACCCTGCTCTGTTGCGTCCTGGAAGGCTTGATCGTAAAATTGAGTTCCCTTTGCCTGATAGACGCCAAAAGAGGCTCGTATTTCAggcaagtcttttggctattttatttggtttactggacatcttatattctgagtgacaaatttcggtttgttttgaagaccttttcagtgtcttttatgttgaaaaatttaagtagtttattttcagctgattgctaacctattgtttgatggtttgatca

upper sequence: GRMZM2G038126_T01 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA11G31450.1 (Glycine max), 5'ss of exon 4
GGCAGACACTCTAGATCCTGCTCTGTTGCGTCCTGGTAGACTTGACAGGAAAATTGAGTTCCCTTTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTCCAAgtaagttggatctccaagagtctttctattttttctctctaaatcatcatttggagtgtcatttgagttctatatctttgtatcctccaa---caacttctct---------------------------------------------------------------------------------------
 ||||||||| | || |||||||||||||||||||| || |||||  | || ||||||||||||||||| ||  | ||||| |||||||| || || || | ||||   ||  | |       | || | |||||    |   |||  |||     |||   ||||    | | | ||   |  ||| ||   ||  ||   |                                                                                       
AGCAGACACTTTGGACCCTGCTCTGTTGCGTCCTGGAAGGCTTGATCGTAAGATTGAGTTCCCTTTGCCTGATAGACGTCAAAAGAGGCTCGTATTTCAGgcaagtcttatggctattttatatgctttattttcatattttgtcagtattcca--tgtttattgaacattttgtattctgagtctctaatttcagtttggtttgcagacttacaatggcttttatattgaacattttaaatagtttattttcagctgcttgctaacctattatttgatgttttgatcag

upper sequence: GRMZM2G038126_T01 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA11G31470.1 (Glycine max), 5'ss of exon 4
GGCAGACACTCTAGATCCTGCTCTGTTGCGTCCTGGTAGACTTGACAGGAAAATTGAGTTCCCTTTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTCCAAgtaagt----tggatctccaa------------gagtctttctattttttctctctaaatcatca--tttggagtgtcatttgagttctatatctttgtatcctccaacaacttctct------------------------------------------
 ||||||||| | || |||||||||||||||||||| || |||||  | |||||||||||||||||||| ||  | ||||| ||||||||||| || || | ||||    ||| | | | |            ||   ||| |||| |  || ||| | |    |  ||| |  |||  |      ||  |  |||| |||  |  || || || |                                            
AGCAGACACTTTGGACCCTGCTCTGTTGCGTCCTGGAAGGCTTGATCGTAAAATTGAGTTCCCTTTGCCTGATAGACGTCAAAAGAGGCTTGTATTTCAGgcaagtcttatgggttttctatatgattcactggaaattttatattctgactttctgagtggcaaattttcgcttgttttgctgactcagtgccttt-tatattgaaaaaatttgtagtttattttcatctgctagctaacctcttgatggtttgatcag

upper sequence: GRMZM2G038126_T01 (Zea mays), 5'ss of exon 4
lower sequence: AT5G58290.1 (Arabidopsis thaliana), 5'ss of exon 4
GGCAGACACTCTAGATCCTGCTCTGTTGCGTCCTGGTAGACTTGACAGGAAAATTGAGTTCCCTTTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTCCAAgtaagttggatctccaagagtctttctattttttctctctaaatcatcatttggagtgtcattt-------gagttct-----atatctttgtatcctcc--aacaacttctct------------
|||||||||||||||||||||||| || |||||||| ||||||||  | || |||||||||||  | || ||  | ||||| ||||||||||||||||| |||||||  ||  | |  ||   ||  ||   |  |     |   || |     | |||  | |        |||| |     ||||||| || ||   |  |   | |  | |            
GGCAGACACTCTAGATCCTGCTCTCTTACGTCCTGGAAGACTTGATCGTAAGATTGAGTTCCCCCTTCCTGATAGACGTCAAAAGAGGCTTGTTTTCCAGgtaagtta-attactacaagcacttaaataactagttaaagagatatgaaaccaaatgttttctcaaaagaaagttttgactgatatcttagtttctgtcttattgattggtttttccttgtgtag

upper sequence: GRMZM2G038126_T01 (Zea mays), 5'ss of exon 4
lower sequence: EFJ04233 (Selaginella moellendorffii), 5'ss of exon 4
GGCAGACACTCTAGATCCTGCTCTGTTGCGTCCTGGTAGACTTGACAGGAAAATTGAGTTCCCTTTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTCCAAgtaagttggatctccaagagtctttctattttttctctctaaatcatcatttggagtgtcatttgagttctatatctttgtatcctccaacaacttctct
 || |||||| | ||||| || || |||||||| || |||||||||||||| |||||||||||| |||| ||| |||| || ||| |||| |||||||| ||   |  |    |  |   |||| | |      || |||  | ||    || |                                              
TGCGGACACTTTGGATCCCGCGCTCTTGCGTCCGGGAAGACTTGACAGGAAGATTGAGTTCCCTCTGCCCGACAGGCGGCAAAAGCGGCTCGTTTTCCAGgtttctgtg----cagacgttcttgcgaagaaagctttcttga-cagtgcttagtccag-----------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67017682|gb|CO446431.1|CO446431
EST:     AAATTGAGTTCCCTTTGCCAGACCGGCGTCAGAAGAAGCTTGTTTTCCAA                         GTCTGCACTGCCAAAATGAACCTGAGTGACGAGGTTGATTTGGAAGACTAT
genomic: AAATTGAGTTCCCTTTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTCCAAgtaagttgga ... aattcttcagGTCTGCACTGCCAAAATGAACCTGAGTGACGAGGTTGATTTGGAAGACTAT
EST: gi|32803133|gb|CD955369.1|CD955369
EST:     AAATTGAGTTCCCTTTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTCCAA                         GTCTGCACTGCCAAAATGAACCTGAGTGACGAGGTTGATTTGGAAGACTAT
genomic: AAATTGAGTTCCCTTTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTCCAAgtaagttgga ... aattcttcagGTCTGCACTGCCAAAATGAACCTGAGTGACGAGGTTGATTTGGAAGACTAT
EST: gi|32836399|gb|CD976077.1|CD976077
EST:     AAATTGAGTTCCCTTTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTCCAA                         GTCTGCACTGCCAAAATGAACCTGAGTGACGAGGTTGATTTGGAAGACTAT
genomic: AAATTGAGTTCCCTTTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTCCAAgtaagttgga ... aattcttcagGTCTGCACTGCCAAAATGAACCTGAGTGACGAGGTTGATTTGGAAGACTAT
EST: gi|4321029|gb|AI467692.1|AI467692
EST:     AAATTGAGTTCCCTTTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTCCAA                         GTCTGCACTGCCAAAATGAACCTGAGTGACGAGGTTGATTTGGAAGACTAT
genomic: AAATTGAGTTCCCTTTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTCCAAgtaagttgga ... aattcttcagGTCTGCACTGCCAAAATGAACCTGAGTGACGAGGTTGATTTGGAAGACTAT
EST: gi|4646635|gb|AI491464.2|AI491464
EST:     AAATTGAGTTCCCTTTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTCCAA                         GTCTGCACTGCCAAAATGAACCTGAGTGACGAGGTTGATTTGGAAGACTAT
genomic: AAATTGAGTTCCCTTTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTCCAAgtaagttgga ... aattcttcagGTCTGCACTGCCAAAATGAACCTGAGTGACGAGGTTGATTTGGAAGACTAT
EST: gi|19351524|gb|BM896056.1|BM896056
EST:     AAATTGAGTTCCCTTTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTCCAA                         GTCTGCACTGCCAAAATGAACCTGAGTGACGAGGTTGATTTGGAAGACTAT
genomic: AAATTGAGTTCCCTTTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTCCAAgtaagttgga ... aattcttcagGTCTGCACTGCCAAAATGAACCTGAGTGACGAGGTTGATTTGGAAGACTAT
EST: gi|33092922|gb|CF052916.1|CF052916
EST:     AAATTGAGTTCCCTTTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTCCAA                         GTCTGCACTGCCAAAATGAACCTGAGTGACGAGGTTGATTTGGAAGACTAT
genomic: AAATTGAGTTCCCTTTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTCCAAgtaagttgga ... aattcttcagGTCTGCACTGCCAAAATGAACCTGAGTGACGAGGTTGATTTGGAAGACTAT
EST: gi|4966643|gb|AI691499.1|AI691499
EST:     NAATTGAGTTCCCTTTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTCCAA                         GTCTGCACTGCCAAAATGAACCTGAGTGACGAGGTTGATTTGGAAGACTAT
genomic: AAATTGAGTTCCCTTTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTCCAAgtaagttgga ... aattcttcagGTCTGCACTGCCAAAATGAACCTGAGTGACGAGGTTGATTTGGAAGACTAT
EST: gi|32835304|gb|CD974982.1|CD974982
EST:     AAATTGAGTTCCCTTTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTCCAA                         GTCTGCACTGCCAAAATGAACCTGAGTGACGAGGTTGATTTGGAAGACTAT
genomic: AAATTGAGTTCCCTTTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTCCAAgtaagttgga ... aattcttcagGTCTGCACTGCCAAAATGAACCTGAGTGACGAGGTTGATTTGGAAGACTAT
EST: gi|60398034|gb|DN230850.1|DN230850
EST:     AAATTGAGTTCCCTTTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTCCAA                         GTCTGCACTGCCAAAATGAACCTGAGTGACGAGGTTGATTTGGAAGACTAT
genomic: AAATTGAGTTCCCTTTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTCCAAgtaagttgga ... aattcttcagGTCTGCACTGCCAAAATGAACCTGAGTGACGAGGTTGATTTGGAAGACTAT
EST: gi|5608000|gb|AI901667.1|AI901667
EST:     AAATTGAGTTCCCTTTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTCCAA                         GTCTGCACTGCCAAAATGAACCTGAGTGACGAGGTTGATTTGGAAGACTAT
genomic: AAATTGAGTTCCCTTTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTCCAAgtaagttgga ... aattcttcagGTCTGCACTGCCAAAATGAACCTGAGTGACGAGGTTGATTTGGAAGACTAT
EST: gi|32908277|gb|CF013090.1|CF013090
EST:     AAATTGAGTTCCCTTTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTCCAA                         GTCTGCACTGCCAAAATGAACCTGAGTGACGAGGTTGATTTGGAAGACTAT
genomic: AAATTGAGTTCCCTTTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTCCAAgtaagttgga ... aattcttcagGTCTGCACTGCCAAAATGAACCTGAGTGACGAGGTTGATTTGGAAGACTAT
EST: gi|78112286|gb|DV530680.1|DV530680
EST:     AAATTGAGTTCCCTTTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTCCAA                         GTCTGCACTGCCAAAATGAACCTGAGTGACGAGGTTGATTTGGAAGACTAT
genomic: AAATTGAGTTCCCTTTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTCCAAgtaagttgga ... aattcttcagGTCTGCACTGCCAAAATGAACCTGAGTGACGAGGTTGATTTGGAAGACTAT
EST: gi|6194636|gb|AW146740.1|AW146740
EST:     AAATTGAGTTCCCTTTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTCCAA                         GTCTGCACTGCCAAAATGAACCTGAGGGACGAGGTTGATTTGGAAGACTAT
genomic: AAATTGAGTTCCCTTTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTCCAAgtaagttgga ... aattcttcagGTCTGCACTGCCAAAATGAACCTGAGTGACGAGGTTGATTTGGAAGACTAT
EST: gi|6022227|gb|AW067155.1|AW067155
EST:     AAATTGAGTTCCCTTTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTCCAA                         GTCTGCACTGCCAAAATGAACCTGAGTGACGAGGTTGATTTGGAAGACTAT
genomic: AAATTGAGTTCCCTTTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTCCAAgtaagttgga ... aattcttcagGTCTGCACTGCCAAAATGAACCTGAGTGACGAGGTTGATTTGGAAGACTAT
EST: gi|32837433|gb|CD977111.1|CD977111
EST:     AAATTGAGTTCCCTTTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTCCAA                         GTCTGCACTGCCAAAATGAACCTGAGTGACGAGGTTGATTTGGAAGACTAT
genomic: AAATTGAGTTCCCTTTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTCCAAgtaagttgga ... aattcttcagGTCTGCACTGCCAAAATGAACCTGAGTGACGAGGTTGATTTGGAAGACTAT
EST: gi|22490303|gb|BU050226.1|BU050226
EST:     CGGCGTCAGAAGAGGCTTGTTTTCCAA                         GTCTGCACTGCCAAAATGANCCTGAGTGACGAGGTTGATTTGGAAGACTAT
genomic: CGGCGTCAGAAGAGGCTTGTTTTCCAAgtaagttgga ... aattcttcagGTCTGCACTGCCAAAATGAACCTGAGTGACGAGGTTGATTTGGAAGACTAT
EST: gi|4314880|gb|AI444677.2|AI444677
EST:     AAATTGAGTTCCCTTTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTCCAA                         GTCTGCACTGCCAAAATGAACCTGAGTGACGAGGTTGATTTGGAAGACTAT
genomic: AAATTGAGTTCCCTTTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTCCAAgtaagttgga ... aattcttcagGTCTGCACTGCCAAAATGAACCTGAGTGACGAGGTTGATTTGGAAGACTAT
EST: gi|6695790|gb|AW288898.1|AW288898
EST:     GCGTCAGAAGAGGCTTGTTTTCCAA                         GTCTGCACTGCCAAAATGAACCTGAGTGACGAGGTTGATTTGGAAGACTAT
genomic: GCGTCAGAAGAGGCTTGTTTTCCAAgtaagttgga ... aattcttcagGTCTGCACTGCCAAAATGAACCTGAGTGACGAGGTTGATTTGGAAGACTAT
EST: gi|32850236|gb|CD989917.1|CD989917
EST:     AAATTGAGTTCCCTTTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTCCAA                         GTCTGCACTGCCAAAATGAACCTGAGTGACGAGGTTGATTTGGAAGACTAT
genomic: AAATTGAGTTCCCTTTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTCCAAgtaagttgga ... aattcttcagGTCTGCACTGCCAAAATGAACCTGAGTGACGAGGTTGATTTGGAAGACTAT
EST: gi|5005873|gb|AI711935.1|AI711935
EST:     AAATTGAGTTCCCTTTGCCAGACCGGCGTCAGAAGAGGCATGTTTTCCAA                         GTCTGCACTGCCAAAATGAACCTGAGTGACGAGGTTGATTTGGAAGACTAT
genomic: AAATTGAGTTCCCTTTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTCCAAgtaagttgga ... aattcttcagGTCTGCACTGCCAAAATGAACCTGAGTGACGAGGTTGATTTGGAAGACTAT
EST: gi|32837757|gb|CD977435.1|CD977435
EST:     AAATTGAGTTCCCTTTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTCCAA                         GTCTGCACTGCCAAAATGAACCTGAGTGACGAGGTTGATTTGGAAGACTAT
genomic: AAATTGAGTTCCCTTTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTCCAAgtaagttgga ... aattcttcagGTCTGCACTGCCAAAATGAACCTGAGTGACGAGGTTGATTTGGAAGACTAT
EST: gi|5081176|gb|AI738333.1|AI738333
EST:     AAATTGAGTTCCCTTTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTCCAA                         GTCTGCACTGCCAAAATGAACCTGAGTGACGAGGTTGATTTGGAAGACTAT
genomic: AAATTGAGTTCCCTTTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTCCAAgtaagttgga ... aattcttcagGTCTGCACTGCCAAAATGAACCTGAGTGACGAGGTTGATTTGGAAGACTAT
EST: gi|60355468|gb|DN222441.1|DN222441
EST:     AAATTGAGTTCCCTTTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTCCAA                         GTCTGCACTGCCAAAATGAACCTGAGTGACGAGGTTGATTTGGAAGACTAT
genomic: AAATTGAGTTCCCTTTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTCCAAgtaagttgga ... aattcttcagGTCTGCACTGCCAAAATGAACCTGAGTGACGAGGTTGATTTGGAAGACTAT
EST: gi|148947210|gb|EC892558.2|EC892558
EST:     AAATTGAGTTCCCTTTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTCCAA                         GTCTGCACTGCCAAAATGAACCTGAGTGACGAGGTTGATTTGGAAGACTAT
genomic: AAATTGAGTTCCCTTTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTCCAAgtaagttgga ... aattcttcagGTCTGCACTGCCAAAATGAACCTGAGTGACGAGGTTGATTTGGAAGACTAT
EST: gi|149051875|gb|EE156005.2|EE156005
EST:     AAATTGAGTTCCCTTTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTCCAA                         GTCTGCACTGCCAAAATGAACCTGAGTGACGAGGTTGATTTGGAAGACTAT
genomic: AAATTGAGTTCCCTTTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTCCAAgtaagttgga ... aattcttcagGTCTGCACTGCCAAAATGAACCTGAGTGACGAGGTTGATTTGGAAGACTAT
EST: gi|4804079|gb|AI665945.1|AI665945
EST:     AAATTGAGTTCCCTTTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTCCAA                         GTCTGCACTGCCAAAATGAACCTGAGTGACGAGGTTGATTTGGAAGACTAT
genomic: AAATTGAGTTCCCTTTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTCCAAgtaagttgga ... aattcttcagGTCTGCACTGCCAAAATGAACCTGAGTGACGAGGTTGATTTGGAAGACTAT
EST: gi|89246893|gb|DY618679.1|DY618679
EST:     AAATTGAGTTCCCTTTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTCCAA                         GTCTGCACTGCCAAAATGAACCTGAGTGACGAGGTTGATTTGGAAGACTAT
genomic: AAATTGAGTTCCCTTTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTCCAAgtaagttgga ... aattcttcagGTCTGCACTGCCAAAATGAACCTGAGTGACGAGGTTGATTTGGAAGACTAT
EST: gi|32835786|gb|CD975464.1|CD975464
EST:     AAATTGAGTTCCCTTTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTCCAA                         GTCTGCACTGCCAAAATGAACCTGAGTGACGAGGTTGATTTGGAAGACTAT
genomic: AAATTGAGTTCCCTTTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTCCAAgtaagttgga ... aattcttcagGTCTGCACTGCCAAAATGAACCTGAGTGACGAGGTTGATTTGGAAGACTAT
EST: gi|5361046|gb|AI795661.1|AI795661
EST:     AAATTGAGTTCCCTTTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTCCAA                         GTTTGCACTGCCAAAATGAACCTGAGTGACGAGGTTGATTTGGAAGACTAT
genomic: AAATTGAGTTCCCTTTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTCCAAgtaagttgga ... aattcttcagGTCTGCACTGCCAAAATGAACCTGAGTGACGAGGTTGATTTGGAAGACTAT
EST: gi|87153030|gb|DY397819.1|DY397819
EST:     AAATTGAGTTCCCTTTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTCCAA                         GTCTGCACTGCCAAAATGAACCTGAGTGACGAGGTTGATTTGGAAGACTAT
genomic: AAATTGAGTTCCCTTTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTCCAAgtaagttgga ... aattcttcagGTCTGCACTGCCAAAATGAACCTGAGTGACGAGGTTGATTTGGAAGACTAT
EST: gi|148931877|gb|EC877341.2|EC877341
EST:     AAATTGAGTTCCCTTTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTCCAA                         GTCTGCACTGCCAAAATGAACCTGAGTGACGAGGTTGATTTGGAAGACTAT
genomic: AAATTGAGTTCCCTTTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTCCAAgtaagttgga ... aattcttcagGTCTGCACTGCCAAAATGAACCTGAGTGACGAGGTTGATTTGGAAGACTAT
EST: gi|24769170|gb|CA404299.1|CA404299
EST:     AAATTGAGTTCCCTTTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTCCAA                         GTCTGCACTGCCAAAATGAACCTGAGTGACGAGGTTGATTTGGAAGACTAT
genomic: AAATTGAGTTCCCTTTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTCCAAgtaagttgga ... aattcttcagGTCTGCACTGCCAAAATGAACCTGAGTGACGAGGTTGATTTGGAAGACTAT
EST: gi|211249737|gb|FL399213.1|FL399213
EST:     AAATTGAGTTCCCTTTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTCCAA                         GTCTGCACTGCCAAAATGAACCTGAGTGACGAGGTTGATTTGGAAGACTAT
genomic: AAATTGAGTTCCCTTTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTCCAAgtaagttgga ... aattcttcagGTCTGCACTGCCAAAATGAACCTGAGTGACGAGGTTGATTTGGAAGACTAT
EST: gi|6342662|gb|AW165486.1|AW165486
EST:     AAATTGAGTTCCCTTTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTCCAA                         GTCTGCACTGCCAAAATGAACCTGAGTGACGAGGTTGATTTGGAAGACTAT
genomic: AAATTGAGTTCCCTTTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTCCAAgtaagttgga ... aattcttcagGTCTGCACTGCCAAAATGAACCTGAGTGACGAGGTTGATTTGGAAGACTAT
EST: gi|211331026|gb|FL444742.1|FL444742
EST:     AAATTGAGTTCCCTTTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTCCAA                         GTCTGCACTGCCAAAATGAACCTGAGTGACGAGGTTGATTTGGAAGACTAT
genomic: AAATTGAGTTCCCTTTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTCCAAgtaagttgga ... aattcttcagGTCTGCACTGCCAAAATGAACCTGAGTGACGAGGTTGATTTGGAAGACTAT
EST: gi|149064642|gb|EE286516.2|EE286516
EST:     GTTCCCTTTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTCCAA                         GTCTGCACTGCCAAAATGAACCTGAGTGACGAGGTTGATTTGGAAGACTAT
genomic: GTTCCCTTTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTCCAAgtaagttgga ... aattcttcagGTCTGCACTGCCAAAATGAACCTGAGTGACGAGGTTGATTTGGAAGACTAT
EST: gi|18964972|gb|BM661316.1|BM661316
EST:     AAATTGAGTTCCCTTTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTCCAA                         GTCTGCACTGCCAAAATGAACCTGAGTGACGAGGTTGATTTGGAAGACTAT
genomic: AAATTGAGTTCCCTTTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTCCAAgtaagttgga ... aattcttcagGTCTGCACTGCCAAAATGAACCTGAGTGACGAGGTTGATTTGGAAGACTAT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGCAGACACTCTAGATCCTGCTCTGTTGCGTCCTGGTAGACTTGACAGGAAAATTGAGTTCCCTTTGCCAGACCGGCGTCAGAAGAGGCTTGTTTTCCAAgtaagttggatctccaagagtctttctattttttctctctaaatcatcatttggagtgtcatttgagttctatatctttgtatcctccaacaacttctct

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG