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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGTGACTACTGGAACGCCAATTCTTGTTATTGTCCCAAACACAGATCAAATAGGCAGTgtgagtagtatatatacgtactgtactttttttatggacaactctactgaacatttagaagagcaaggattttgttaataaatatatgtttttcataaccatgttggtccacag

Basic information

species Zea mays
transcript GRMZM2G036861_T01
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211106359|gb|FL258168.1|FL258168
EST:     CTGGAACGCCAATTCTTGTTATTGTCCCAAACACAGATCAAATAGGCAGT                         GATCACCGTGAAATAGCCAATGTGTACCGACCTTCTCATGCAGACGCAACT
genomic: CTGGAACGCCAATTCTTGTTATTGTCCCAAACACAGATCAAATAGGCAGTgtgagtagta ... tggtccacagGATCACCGTGAAATAGCCAATGTGTACCGACCTTCTCATGCAGACGCAACT
EST: gi|148952455|gb|EC898280.2|EC898280
EST:     CTGGAACGCCAATTCTTGTTATTGTCCCAAACACAGATCAAATAGGCAGT                         GATCACCGTGAAATAGCCAATGTGTACCGACCTTCTCATGCAGACGCAACT
genomic: CTGGAACGCCAATTCTTGTTATTGTCCCAAACACAGATCAAATAGGCAGTgtgagtagta ... tggtccacagGATCACCGTGAAATAGCCAATGTGTACCGACCTTCTCATGCAGACGCAACT
EST: gi|148950436|gb|EC896004.2|EC896004
EST:     CTGGAACGCCAATTCTTGTTATTGTCCCAAACACAGATCAAATAGGCAGT                         GATCACCGTGAAATAGCCAATGTGTACCGACCTTCTCATGCAGACGCAACT
genomic: CTGGAACGCCAATTCTTGTTATTGTCCCAAACACAGATCAAATAGGCAGTgtgagtagta ... tggtccacagGATCACCGTGAAATAGCCAATGTGTACCGACCTTCTCATGCAGACGCAACT
EST: gi|149096924|gb|EE182722.2|EE182722
EST:     CTGGAACGCCAATTCTTGTTATTGTCCCAAACACAGATCAAATAGGCAGT                         GATCACCGTGAAATAGCCAATGTGTACCGACCTTCTCATGCAGACGCAACT
genomic: CTGGAACGCCAATTCTTGTTATTGTCCCAAACACAGATCAAATAGGCAGTgtgagtagta ... tggtccacagGATCACCGTGAAATAGCCAATGTGTACCGACCTTCTCATGCAGACGCAACT
EST: gi|149088025|gb|EE177228.2|EE177228
EST:     CTGGAACGCCAATTCTTGTTATTGTCCCAAACACAGATCAAATAGGCAGT                         GATCACCGTGAAATAGCCAATGTGTACCGACCTTCTCATGCAGACGCAACT
genomic: CTGGAACGCCAATTCTTGTTATTGTCCCAAACACAGATCAAATAGGCAGTgtgagtagta ... tggtccacagGATCACCGTGAAATAGCCAATGTGTACCGACCTTCTCATGCAGACGCAACT
EST: gi|149089246|gb|EE178450.2|EE178450
EST:     CTGGAACGCCAATTCTTGTTATTGTCCCAAACACAGATCAAATAGGCAGT                         GATCACCGTGAAATAGCCAATGTGTACCGACCTTCTCATGCAGACGCAACT
genomic: CTGGAACGCCAATTCTTGTTATTGTCCCAAACACAGATCAAATAGGCAGTgtgagtagta ... tggtccacagGATCACCGTGAAATAGCCAATGTGTACCGACCTTCTCATGCAGACGCAACT
EST: gi|149106625|gb|EE188518.2|EE188518
EST:     CTGGAACGCCAATTCTTGTTATTGTCCCAAACACAGATCAAATAGGCAGT                         GATCACCGTGAAATAGCCAATGTGTACCGACCTTCTCATGCAGACGCAACT
genomic: CTGGAACGCCAATTCTTGTTATTGTCCCAAACACAGATCAAATAGGCAGTgtgagtagta ... tggtccacagGATCACCGTGAAATAGCCAATGTGTACCGACCTTCTCATGCAGACGCAACT
EST: gi|148950790|gb|EC896395.2|EC896395
EST:     CTGGAACGCCAATTCTTGTTATTGTCCCAAACACAGATCAAATAGGCAGT                         GATCACCGTGAAATAACCAATGTGTACCGAACTTCTCCTGCAGACGCAACT
genomic: CTGGAACGCCAATTCTTGTTATTGTCCCAAACACAGATCAAATAGGCAGTgtgagtagta ... tggtccacagGATCACCGTGAAATAGCCAATGTGTACCGACCTTCTCATGCAGACGCAACT
EST: gi|148951094|gb|EC896759.2|EC896759
EST:     CTGGAACGCCAATTCTTGTTATTGTCCCAAACACAGATCAAATAGGCAGT                         GATCACCGTGAAATAGCCAATGTGTACCGACCTTCTCATGCAGACGCAACT
genomic: CTGGAACGCCAATTCTTGTTATTGTCCCAAACACAGATCAAATAGGCAGTgtgagtagta ... tggtccacagGATCACCGTGAAATAGCCAATGTGTACCGACCTTCTCATGCAGACGCAACT
EST: gi|211106358|gb|FL258167.1|FL258167
EST:     CTGGAACGCCAATTCTTGTTATTGTCCCAAACACAGATCAAATAGGCAGT                         GATCACCGTGAAATAGCCAATGTGTACCGACCTTCTCATGCAGACGCAACT
genomic: CTGGAACGCCAATTCTTGTTATTGTCCCAAACACAGATCAAATAGGCAGTgtgagtagta ... tggtccacagGATCACCGTGAAATAGCCAATGTGTACCGACCTTCTCATGCAGACGCAACT
EST: gi|149084565|gb|EE174034.2|EE174034
EST:     CTGGAACGCCAATTCTTGTTATTGTCCCAAACACAGATCAAATAGGCAGT                         GATCACCGTGAAATAGCCAATGTGTACCGACCTTCTCATGCAGACGCAACT
genomic: CTGGAACGCCAATTCTTGTTATTGTCCCAAACACAGATCAAATAGGCAGTgtgagtagta ... tggtccacagGATCACCGTGAAATAGCCAATGTGTACCGACCTTCTCATGCAGACGCAACT
EST: gi|76281790|gb|DV021358.1|DV021358
EST:     CTGGAACGCCAATTCTTGTTATTGTCCCAAACACAGATCAAATAGGCAGT                         GATCACCGTGAAAATAGCCAATGTGTACCGACCTTCTCATGCAGACGCAAC
genomic: CTGGAACGCCAATTCTTGTTATTGTCCCAAACACAGATCAAATAGGCAGTgtgagtagta ... tggtccacagGATCACCGTGAAA-TAGCCAATGTGTACCGACCTTCTCATGCAGACGCAAC
EST: gi|149067437|gb|EE287007.2|EE287007
EST:     CTGGAACGCCAATTCTTGTTATTGTCCCAAACACAGATCAAATAGGCAGT                         GATCACCGTGAAATAGCCAATGTGTACCGACCTTCTCATGCAGACGCAACT
genomic: CTGGAACGCCAATTCTTGTTATTGTCCCAAACACAGATCAAATAGGCAGTgtgagtagta ... tggtccacagGATCACCGTGAAATAGCCAATGTGTACCGACCTTCTCATGCAGACGCAACT
EST: gi|149098825|gb|EE184838.2|EE184838
EST:     CTGGAACGCCAATTCTTGTTATTGTCCCAAACACAGATCAAATAGGCAGT                         GATCACCGTGAAATAGCCAATGTGTACCGACCTTCTCATGCAGACGCAACT
genomic: CTGGAACGCCAATTCTTGTTATTGTCCCAAACACAGATCAAATAGGCAGTgtgagtagta ... tggtccacagGATCACCGTGAAATAGCCAATGTGTACCGACCTTCTCATGCAGACGCAACT
EST: gi|76934911|gb|DV174083.1|DV174083
EST:     CTGGAACGCCAATTCTTGTTATTGTCCCAAACACAGATCAAATAGGCAGT                         GATCCCCGTGAAATAGCCAATGTGTACCGACCTTTTCATG
genomic: CTGGAACGCCAATTCTTGTTATTGTCCCAAACACAGATCAAATAGGCAGTgtgagtagta ... tggtccacagGATCACCGTGAAATAGCCAATGTGTACCGACCTTCTCATG
EST: gi|211106349|gb|FL258158.1|FL258158
EST:     CTGGAACGCCAATTCTTGTTATTGTCCCAAACACAGATCAAATAGGCAGT                         GATCACCGTGAAATAGCCAATGTGTACCGACCTTCTCATGCAGACGCAACT
genomic: CTGGAACGCCAATTCTTGTTATTGTCCCAAACACAGATCAAATAGGCAGTgtgagtagta ... tggtccacagGATCACCGTGAAATAGCCAATGTGTACCGACCTTCTCATGCAGACGCAACT
EST: gi|148957149|gb|EC903140.2|EC903140
EST:     CTGGAACGCCAATTCTTGTTATTGTCCCAAACACAGATCAAATAGGCAGT                         GATCACCGTGAAATAGCCAATGTGTACCGACCTTCTCATGCAGACGCAACT
genomic: CTGGAACGCCAATTCTTGTTATTGTCCCAAACACAGATCAAATAGGCAGTgtgagtagta ... tggtccacagGATCACCGTGAAATAGCCAATGTGTACCGACCTTCTCATGCAGACGCAACT
EST: gi|211106350|gb|FL258159.1|FL258159
EST:     CTGGAACGCCAATTCTTGTTATTGTCCCAAACACAGATCAAATAGGCAGT                         GATCACCGTGAAATAGCCAATGTGTACCGACCTTCTCATGCAGACGCAACT
genomic: CTGGAACGCCAATTCTTGTTATTGTCCCAAACACAGATCAAATAGGCAGTgtgagtagta ... tggtccacagGATCACCGTGAAATAGCCAATGTGTACCGACCTTCTCATGCAGACGCAACT
EST: gi|149071022|gb|EE159425.2|EE159425
EST:     CTGGAACGCCAATTCTTGTTATTGTCCCAAACACAGATCAAATAGGCAGT                         GATCACCGTGAAATAGCCAATGTGTACCGACCTTCTCATGCAGACGCAACT
genomic: CTGGAACGCCAATTCTTGTTATTGTCCCAAACACAGATCAAATAGGCAGTgtgagtagta ... tggtccacagGATCACCGTGAAATAGCCAATGTGTACCGACCTTCTCATGCAGACGCAACT
EST: gi|149036977|gb|EE155215.2|EE155215
EST:     CTGGAACGCCAATTCTTGTTATTGTCCCAAACACAGATCAAATAGGCAGT                         GATCACCGTGAAATAGCCAATGTGTACCGACCTTCTCATGCAGACGCAACT
genomic: CTGGAACGCCAATTCTTGTTATTGTCCCAAACACAGATCAAATAGGCAGTgtgagtagta ... tggtccacagGATCACCGTGAAATAGCCAATGTGTACCGACCTTCTCATGCAGACGCAACT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGGTGACTACTGGAACGCCAATTCTTGTTATTGTCCCAAACACAGATCAAATAGGCAGTgtgagtagtatatatacgtactgtactttttttatggacaactctactgaacatttagaagagcaaggattttgttaataaatatatgtttttcataaccatgttggtccacag

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