Sequence
atgc intronic sequence ATGC exonic sequenceCACATGTGGCTGGGCATCTTTTGGGGGGGACAGTTTGGAAGATTACAAAAGATGGGGAGGATGTTGTGTATGCTGTTGACTTCAACCATCGGAAAGAGAGgttagtttttctcttttttttcagaattaatttagtgttttaggcataaaataccaaaattgttgtattttcccag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G036050_T05 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os09g39590.1 (Oryza sativa), 5'ss of exon 4
CACATGTGGCTGGGCATCTTTTGGGGGGGACAGTTTGGAAGATTACAAAAGATGGGGAGGATGTTGTGTATGCTGTTGACTTCAACCATCGGAAAGAGAGgttagtttttctcttttt--tttcagaattaatttagtgtt---ttaggcataaaataccaaaattgttgtattttcccag
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CACATGTTGCTGGGCATGATTTGGGTGGCACGGTATGGAAGATAACAAAAGATGGGGAGGATGTTGTTTATGCTGTTGACTTCAACCATCGTAAAGAGAGgttaaatccttcctttgtcatttacttgtcattttagttttctctttattagcaaataataacagcaatgtgcttttccag
upper sequence: GRMZM2G036050_T05 (Zea mays), 5'ss of exon 4
lower sequence: AT5G23880.1 (Arabidopsis thaliana), 5'ss of exon 4
CACATGTGGCTGGGCATCTTTTGGGGGGGACAGTTTGGAAGATTACAAAAGATGGGGAGGATGTTGTGTATGCTGTTGACTTCAACCATCGGAAAGAGAGgt---tagtttt---tctcttttttttcagaattaatttagtgttttaggcataaaataccaaaattgttgtattttcccag-------------------
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CTCATGTTGCTGGACACATGCTGGGAGGTAGCATCTGGAGGATAACAAAGGATGGGGAGGATGTTATATATGCTGTTGACTACAATCATCGGAAAGAAAGgtacatatgttcagattttatcttatttgaagttcgagtaatgttcataacagtaagtaaagatgtggactcgtgatactgaattgtatatcttaattcag
upper sequence: GRMZM2G036050_T05 (Zea mays), 5'ss of exon 4
lower sequence: Vv16s0050g00590.t01 (Vitis vinifera), 5'ss of exon 4
CACATGTGGCTGGGCATCTTTTGGGGGGGACAGTTTGGAAGATTACAAAAGATGGGGAGGATGTTGTGTATGCTGTTGACTTCAACCATCGGAAAGAGAGgttagtttttctcttttttttcagaattaatttagtg---ttttaggcataaaatac-caaaattgttgtattttcccag------------------------------------------
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CTCATGTTGCTGGGCATCTCTTGGGAGGTACTGTCTGGAAGATAACAAAAGATGGGGAAGATGTCATATATGCTGTTGACTTTAACCATCGCAAAGAAAGgtgagccttaatttgctagttgcaactacctgcagtggacttttagacttcttttatgcataaaatttacattcatgtaagtaagcaagaataagcatacttagtattgcggtttatttcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|31361140|gb|CD445497.1|CD445497EST: GATGGGGAGGATGTTGTGTATGCTGTTGACTTCAACCATCGGAAAGAGAG GCATTTGAATGGCACCGTTCTTGGATCTTTCGTGCGGCCAGCTGTTCTGAT
genomic: GATGGGGAGGATGTTGTGTATGCTGTTGACTTCAACCATCGGAAAGAGAGgttagttttt ... attttcccagGCATTTGAATGGCACCGTTCTTGGATCTTTCGTGCGGCCAGCTGTTCTGAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CACATGTGGCTGGGCATCTTTTGGGGGGGACAGTTTGGAAGATTACAAAAGATGGGGAGGATGTTGTGTATGCTGTTGACTTCAACCATCGGAAAGAGAGgttagtttttctcttttttttcagaattaatttagtgttttaggcataaaataccaaaattgttgtattttcccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA