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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCACCTTTTGATACAAAGCTCCAGAATACATTTATAATCCACTTCACTTATGGATGTGACTACTCACTAAAGgtattagaatcccaaactgattaatttcttcaatatatctggtttccatacgaaatttaaaaatattgagtgcataaagtagatattttattgttcctgttattttactgaaagtattattaatcttttag

Basic information

species Zea mays
transcript GRMZM2G035595_T03
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G035595_T02 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os01g16600.1 (Oryza sativa), 5'ss of exon 6
CCACCTTTTGATACAAAGCTCCAGAATACATTTATAATCCACTTCACTTATGGATGTGACTACTCACTAAAGgtattagaatcccaaactgattaatttcttcaatatatctggtttccatacgaaatttaaaaatattgagtgcataaagtagatattttattgttcctgttattttactgaa--agtattattaatcttttag----------------
|||||||||||||| || ||   |||||||||||| |||||||||||||| |||||||||||  |||| ||||||||  ||||||| |    | |  || ||| | | || |   |      || ||  ||||| |  ||||   |||||||| | |  | | | ||  | || |||| || |   | | | ||| |  ||  |                 
CCACCTTTTGATACCAAACTTGGGAATACATTTATTATCCACTTCACTTACGGATGTGACTATACACTCAAGgtattgaaatcccagatctgtgatgtttttctacagatataaatattcatcggaagctaaaatttctgaggcgataaagtaaagaagtcactattgtttttgttttgctaacataatgtaattgacattacactggcaaatgatttcag