Sequence
atgc intronic sequence ATGC exonic sequenceACAATTCTTGAGAAGATTGCCCCCACATGGATGAATGTGTCAATTCAAATGAAAGAGGATGAAGAGACAGATAAAGTTTTTGGATGGGTGTTGGAAATgtaagaattactttatcctgtatgcaaaccgtgcaagttcttatgttcacttattacattattacaattccag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G035595_T02 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os01g16600.1 (Oryza sativa), 5'ss of exon 4
ACAATTCTTGAGAAGATTGCCCCCACATGGATGAATGTGTCAATTCAAATGAAAGAGGATGAAGAGACAGATAAAGTTTTTGGATGGGTGTTGGAAATgtaagaattactttatcctgtatgcaaaccgtgcaagttcttatgttcacttattacattattacaattccag-------------------------
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ATACAACTTGAGAAGATTGCCCCTACATGGATGAATGTATCGATTCAAATGAAAGAAGATCAGGAGACAGATAAAGCTTTTGGATGGGTCTTGGAAATgtgagaattacgcttgtgtatattttcataatgca------tttacttgcttgttacattgttatgattccaggttcttgtttttacttgacttctag
upper sequence: GRMZM2G035595_T02 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA15G37490.3 (Glycine max), 5'ss of exon 5
ACAATTC--TTGAGAAGATTGCCCCCACATGGATGAATGTGTCAATTCAAATGAAAGAGGATGAAGAGACAGATAAAGTTTTTGGATGGGTGTTGGAAATgtaagaattactttatcctgtatgcaaaccgt--------gcaagttctta----tgttcacttattacattattacaattccag------------------
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--GATTTGATCGCAAAGATTGCCCCCACATGGATGAATATTTCTTTGAAGATGAAAGAGGACCCAGAGACTGATAAAGCTTTTGGATGGGTGCTAGAAATgtatgtcttaccaaacaactgatagatatttttgttctagaagaggtattggaactgataatttgatacattatgctaatggtttttttcttgtggaaccaag
upper sequence: GRMZM2G035595_T02 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA13G26610.1 (Glycine max), 5'ss of exon 5
ACAATTC--TTGAGAAGATTGCCCCCACATGGATGAATGTGTCAATTCAAATGAAAGAGGATGAAGAGACAGATAAAGTTTTTGGATGGGTGTTGGAAATgtaagaattac----------------tttatcctgtatgcaaaccgtgcaagttcttatgttcacttattacattattacaattccag----------------
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--GATTTGATTGCAAAGATTGCCCCCACATGGATGAATATTTCTTTGAAGATGAAAGAGGATCCAGAGACTGATAAAGCTTTTGGATGGGTGCTAGAAATgtatgtcttaccaaaaaatctgatagatatttttgttttagaagaggtattggaactgatagttttctgctttatgttaatgattttttttcttgtggagccaag
upper sequence: GRMZM2G035595_T02 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA02G44810.1 (Glycine max), 5'ss of exon 6
ACAATTCTTGAGAAGATTGCCCCCACATGGATGAATGTGTCAATTCAAATGAAAGAGGATGAAGAGACAGATAAAGTTTTTGGATGGGTGTTGGAAATgtaagaattacttta-----tcctgtatgcaaaccgtgcaagttcttatgttcacttattaca--ttattacaattccag--------------------------------------------------------------------------------
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TCTTTGATGGAGGAAATAGCTTCCACATGGGTAAATGTTTCATTGAGAATGAAAGATGATCAAGAGACTGATAAAGCTTTTGGATGGGTGCTTGAAATgtgagtattaccatagaaattcacgaattcacgattcggaggcttcattttttattatttatcatttactgatgttcttttcattttataatttttcctggaccgtggtctgtattaataggtctaaccttctgctgctttgattctctgttgagtaaag
upper sequence: GRMZM2G035595_T02 (Zea mays), 5'ss of exon 4
lower sequence: Vv06s0009g03360.t01 (Vitis vinifera), 5'ss of exon 4
ACAATTCTTGAGAAGATTGCCCCCACATGGATGAATGTGTCAATTCAAATGAAAGAGGATGAAGAGACAGATAAAGTTTTTGGATGGGTGTTGGAAATgtaagaattactttatcctgtatgcaaaccgtgcaagttcttatgttcacttattac-attattacaattccag------------------------------------------
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TCCCAACTGGAGGAAATTGCACCTACATGGATGAATATTTCTTTGAGAATGAAAGATGATCCAGAGACAGATAAAGCTTTTGGATGGGTGCTAGAAATgtgagtagtaccttaaaatatttcatcttctgtcaggttctgtcagttgatggtgactgttctttggttttctgatatgaattttgatgtgtttccattttttctttgaaacaaagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|76909208|gb|DV163272.1|DV163272EST: ATGAAAGAGGATGAAGAGACAGATAAAGTTTTTGGATGGGTGTTGGAAAT CCTTCTTTGACCTTTAGGTATGCATACGCTGTTGCTAGCGCATTGCATGGA
genomic: ATGAAAGAGGATGAAGAGACAGATAAAGTTTTTGGATGGGTGTTGGAAATgtaagaatta ... acaattccagCCTTCTTTGACCTTTAGGTATGCATACGCTGTTGCTAGCGCATTGCATGGA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ACAATTCTTGAGAAGATTGCCCCCACATGGATGAATGTGTCAATTCAAATGAAAGAGGATGAAGAGACAGATAAAGTTTTTGGATGGGTGTTGGAAATgtaagaattactttatcctgtatgcaaaccgtgcaagttcttatgttcacttattacattattacaattccag
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA