1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
GCCCAACCTGCTGCCCCTGTGGCCCCTGCTGCATCAGTTGCAAGAACACCAACACAGGCTCCTGTTGCCACAGCTGAAACgtgagccatcttccccccttcatcttttgtggtaaccctatggtttctcttatgccattgttattgtcttacacag
species | Zea mays |
transcript | GRMZM2G035417_T01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GCATCAGTTGCAAGAACACCAACACAGGCTCCTGTTGCCACAGCTGAAAC GGCACCTCCAAGTGTCCAACCTCAGGCTGCTCCAGCTGCTACGGTTGCTGCEST: gi|211524990|gb|FL195258.1|FL195258
genomic: GCATCAGTTGCAAGAACACCAACACAGGCTCCTGTTGCCACAGCTGAAACgtgagccatc ... tcttacacagGGCACCTCCAAGTGTCCAACCTCAGGCTGCTCCAGCTGCTACGGTTGCTGC
EST: GCATCAGTTGCAAGAACACCAACACAGGCTCCTGTTGCCACAGCTGAAAC GGCACCTCCAAGTGCCCAACCTCAGGCTGCTCCAGCTGCTACGGTTGCTGCEST: gi|5932681|gb|AW057042.1|AW057042
genomic: GCATCAGTTGCAAGAACACCAACACAGGCTCCTGTTGCCACAGCTGAAACgtgagccatc ... tcttacacagGGCACCTCCAAGTGTCCAACCTCAGGCTGCTCCAGCTGCTACGGTTGCTGC
EST: GTTGCCACAGCTGAAAC GGCACCTCCAAGTGTCCAACCTCAGGCTGCTCCAGCTGCTACGGTTGCTGCEST: gi|71448259|gb|DR829309.1|DR829309
genomic: GTTGCCACAGCTGAAACgtgagccatc ... tcttacacagGGCACCTCCAAGTGTCCAACCTCAGGCTGCTCCAGCTGCTACGGTTGCTGC
EST: GCATCAGTTGCAAGAACACCAACACAGGCTCCTGTTGCCACAGCTGAAAC GGCACCTCCAAGTGTCCAACCTCAGGCTGCTCCAGCTGCTACGGTTGCTGCEST: gi|78121958|gb|DV540342.1|DV540342
genomic: GCATCAGTTGCAAGAACACCAACACAGGCTCCTGTTGCCACAGCTGAAACgtgagccatc ... tcttacacagGGCACCTCCAAGTGTCCAACCTCAGGCTGCTCCAGCTGCTACGGTTGCTGC
EST: GCATCAGTTGCAAGAACACCAACACAGGCTCCTGTTGCCACAGCTGAAAC GGCACCTCCAAGTGTCCAACCTCAGGCTGCTCCAGCTGCTACGGTTGCTGCEST: gi|120480604|gb|EH210908.1|EH210908
genomic: GCATCAGTTGCAAGAACACCAACACAGGCTCCTGTTGCCACAGCTGAAACgtgagccatc ... tcttacacagGGCACCTCCAAGTGTCCAACCTCAGGCTGCTCCAGCTGCTACGGTTGCTGC
EST: GCATCAGTTGCAAGAACACCAACACAGGCTCCTGTTGCCACAGCTGAAAC GGCACCTCCAAGTGTCCAACCTCAGGCTGCTCCAGCTGCTACGGTTGCTGCEST: gi|211521980|gb|FL195242.1|FL195242
genomic: GCATCAGTTGCAAGAACACCAACACAGGCTCCTGTTGCCACAGCTGAAACgtgagccatc ... tcttacacagGGCACCTCCAAGTGTCCAACCTCAGGCTGCTCCAGCTGCTACGGTTGCTGC
EST: GCATCAGTTGCAAGAACACCAACACAGGCTCCTGTTGCCACAGCTGAAAC GGCACCTCCAAGTGCCCAACCTCAGGCTGCTCCAGCTGCTACGGTTGCTGCEST: gi|78107573|gb|DV525991.1|DV525991
genomic: GCATCAGTTGCAAGAACACCAACACAGGCTCCTGTTGCCACAGCTGAAACgtgagccatc ... tcttacacagGGCACCTCCAAGTGTCCAACCTCAGGCTGCTCCAGCTGCTACGGTTGCTGC
EST: GCATCAGTTGCAAGAACACCAACACAGGCTCCTGTTGCCACAGCTGAAAC GGCACCTCCAAGTGTCCAACCTCAGGCTGCTCCAGCTGCTACGGTTGCTGCEST: gi|9825075|gb|BE575292.1|BE575292
genomic: GCATCAGTTGCAAGAACACCAACACAGGCTCCTGTTGCCACAGCTGAAACgtgagccatc ... tcttacacagGGCACCTCCAAGTGTCCAACCTCAGGCTGCTCCAGCTGCTACGGTTGCTGC
EST: GCATCAGTTGCAAGAACACCAACACAGGCTCCTGTTGCCACAGCTGAAAC GGCACCTCCAAGTGTCCAACCTCAGGCTGCTCCAGCTGCTACGEST: gi|5566780|gb|AI881646.1|AI881646
genomic: GCATCAGTTGCAAGAACACCAACACAGGCTCCTGTTGCCACAGCTGAAACgtgagccatc ... tcttacacagGGCACCTCCAAGTGTCCAACCTCAGGCTGCTCCAGCTGCTACG
EST: GCATCAGTTGCAAGAACACCAACACAGGCTCCTGTTGCCACAGCTGAAAC GGCACCTCCAAGTGTCCAACCTCAGGCTGCTCCAGCTGCTACGGTTGCTGCEST: gi|94472331|gb|EB701289.1|EB701289
genomic: GCATCAGTTGCAAGAACACCAACACAGGCTCCTGTTGCCACAGCTGAAACgtgagccatc ... tcttacacagGGCACCTCCAAGTGTCCAACCTCAGGCTGCTCCAGCTGCTACGGTTGCTGC
EST: CATCAGTTGCAAGAAACACCA-CACAGGCTCCTGTTGCCACAGCTGAAAC GGCACCCTCCA-GTGTCCAACCTCANGCTGCTCCAGCTGCTACGGTTGCTGEST: gi|20803264|gb|BQ294314.1|BQ294314
genomic: CATCAGTTGCAAGAA-CACCAACACAGGCTCCTGTTGCCACAGCTGAAACgtgagccatc ... tcttacacagGGCACC-TCCAAGTGTCCAACCTCAGGCTGCTCCAGCTGCTACGGTTGCTG
EST: GCATCAGTTGCAAGAACACCAACACAGGCTCCTGTTGCCACAGCTGAAAC GGCACCTCCAAGTGTCCAACCTCAGGCTGCTCCAGCTGCTACGGTTGCTGCEST: gi|91876714|gb|EB406671.1|EB406671
genomic: GCATCAGTTGCAAGAACACCAACACAGGCTCCTGTTGCCACAGCTGAAACgtgagccatc ... tcttacacagGGCACCTCCAAGTGTCCAACCTCAGGCTGCTCCAGCTGCTACGGTTGCTGC
EST: GCATCAGTTGCAAGAACACCAACACAGGCTCCTGTTGCCACAGCTGAAAC GGCACCTCCAAGTGTCCAACCTCAGGCTGCTCCAGCTGCTACGGTTGCTGCEST: gi|74244160|gb|DT652074.1|DT652074
genomic: GCATCAGTTGCAAGAACACCAACACAGGCTCCTGTTGCCACAGCTGAAACgtgagccatc ... tcttacacagGGCACCTCCAAGTGTCCAACCTCAGGCTGCTCCAGCTGCTACGGTTGCTGC
EST: GCATCAGTTGCAAGAACACCAACACAGGCTCCTGTTGCCACAGCTGAAAC GGCACCTCCAAGTGTCCAACCTCAGGCTGCTCCAGCTGCTACGGTTGCTGCEST: gi|76908411|gb|DV162927.1|DV162927
genomic: GCATCAGTTGCAAGAACACCAACACAGGCTCCTGTTGCCACAGCTGAAACgtgagccatc ... tcttacacagGGCACCTCCAAGTGTCCAACCTCAGGCTGCTCCAGCTGCTACGGTTGCTGC
EST: GCATCAGTTGCAAGAACACCAACACAGGCTCCTGTTGCCACAGCTGAAAC GGCACCTCCAAGTGTCCAACCTCAGGCTGCTCCAGCTGCTACGGTTGCTGC
genomic: GCATCAGTTGCAAGAACACCAACACAGGCTCCTGTTGCCACAGCTGAAACgtgagccatc ... tcttacacagGGCACCTCCAAGTGTCCAACCTCAGGCTGCTCCAGCTGCTACGGTTGCTGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCCCAACCTGCTGCCCCTGTGGCCCCTGCTGCATCAGTTGCAAGAACACCAACACAGGCTCCTGTTGCCACAGCTGAAACgtgagccatcttccccccttcatcttttgtggtaaccctatggtttctcttatgccattgttattgtcttacacag
- - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA