1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GCATATTTTTTGGACAAAGACGGAAACTTCAGAAACAAATTTTCTGATGATTGGGAACGGTTTCTGTCAAAGCATCCAGTGCCCTTTTACTACTGTGTTGgtatttgttttcttctgtaactgcactttcaattattaagaagactcggatagccagatgataaaatgatagctagtgtcggagtggtaaaaaattcata...
species | Zea mays |
transcript | GRMZM2G034536_T01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TTGGGAACGGTTTCTGTCAAAGCATCCAGTGCCCTTTTACTACTGTGTTG GTGTGGTTGTGTTCTTTGTAATGGTTGGATTTTTCGGGCTAATACTACACCEST: gi|88756867|gb|DY541008.1|DY541008
genomic: TTGGGAACGGTTTCTGTCAAAGCATCCAGTGCCCTTTTACTACTGTGTTGgtatttgttt ... tttggttcagGTGTGGTTGTGTTCTTTGTAATGGTTGGATTTTTCGGGCTAATACTACACC
EST: TTGGGAACGGTTTCTGTCAAAGCATCCAGTGCCCTTTTACTACTGTGTTG GTGTGGTTGTGTTCTTTGTAATGGTTGGATTTTTCGGGCTAATACTACACCEST: gi|88756868|gb|DY541009.1|DY541009
genomic: TTGGGAACGGTTTCTGTCAAAGCATCCAGTGCCCTTTTACTACTGTGTTGgtatttgttt ... tttggttcagGTGTGGTTGTGTTCTTTGTAATGGTTGGATTTTTCGGGCTAATACTACACC
EST: TTGGGAACGGTTTCTGTCAAAGCATCCAGTGCCCTTTTACTACTGTGTTG GTGTGGTTGTGTTCTTTGTAATGGTTGGATTTTTCGGGCTAATACTACACC
genomic: TTGGGAACGGTTTCTGTCAAAGCATCCAGTGCCCTTTTACTACTGTGTTGgtatttgttt ... tttggttcagGTGTGGTTGTGTTCTTTGTAATGGTTGGATTTTTCGGGCTAATACTACACC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCATATTTTTTGGACAAAGACGGAAACTTCAGAAACAAATTTTCTGATGATTGGGAACGGTTTCTGTCAAAGCATCCAGTGCCCTTTTACTACTGTGTTGgtatttgttttcttctgtaactgcactttcaattattaagaagactcggatagccagatgataaaatgatagctagtgtcggagtggtaaaaaattcata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aagaagac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtaaaaaa