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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACCGATACAGTCAAGTGTAAAGTAGTTGATGGTGGGGAATTGAAATCACGGCGCCACCTAAATGTCCGTGGAAAGAGTGCTACTTTGCCATCTATCACTGgttagttgatcccctgaccagtctagctgccatttagttgcatccaacatcctaacgtgcttctgttttcaacag

Basic information

species Zea mays
transcript GRMZM2G033526_T01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G033526_T02 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os10g42100.1 (Oryza sativa), 5'ss of exon 4
ACCGATACAGTCAAGTGTAAAGTAGTTGATGGTGGGGAATTGAAATCACGGCGCCACCTAAATGTCCGTGGAAAGAGTGCTACTTTGCCATCTATCACTGgttagttgatc---ccctgaccagtctagctgccatttagttgcatccaacatcctaacgtgcttctgttttcaacag
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GCTGATACGGTTAAGTGTGAAGTAGTTGATGGTGGGGAACTGAAATCAAGGCGCCACCTAAATGTCCGTGGAAAGAGTGCGACTTTGCCATCTATTACAGgtcggttgatttctccataacatgttcaacctctagatagttatgcacaagatgctgacatccttctgcttt-aacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|13177889|gb|BG349072.1|BG349072
EST:     CGCCACCTAAATGTCCGTGGAAAGAGTGCTACTTCTGCCATCTATCACTG                         C
genomic: CGCCACCTAAATGTCCGTGGAAAGAGTGCTACTT-TGCCATCTATCACTGgttagttgat ... ttttcaacag-
EST: gi|13177889|gb|BG349072.1|BG349072
EST:     CGCCACCTAAATGTCCGTGGAAAGAGTGCTACTTCTGCCATCTATCACTG                         C
genomic: CGCCACCTAAATGTCCGTGGAAAGAGTGCTACTT-TGCCATCTATCACTGgttagttgat ... ttttcaacag-
EST: gi|211511544|gb|FL285063.1|FL285063
EST:     GCGCCACCTAAATGTCCGTGGAAAGAGTGCTACTTTGCCATCTATCACTG                         AGAAGGATTGGGAAGACATAAA-TTTGGTGTCGAAAAACGGTGT-GATTTC
genomic: GCGCCACCTAAATGTCCGTGGAAAGAGTGCTACTTTGCCATCTATCACTGgttagttgat ... ttttcaacagAGAAGGATTGGGAAGACATAAAATTTGGTGTCGAAAA-CGGTGTTGATTTC
EST: gi|166473861|gb|EG141158.1|EG141158
EST:     GCGCCACCTAAATGTCCGTGGAAAGAGTGCTACTTTGCCATCTATCACTG                         AGAAGGATTGGGAAGACAT
genomic: GCGCCACCTAAATGTCCGTGGAAAGAGTGCTACTTTGCCATCTATCACTGgttagttgat ... ttttcaacagAGAAGGATTGGGAAGACAT
EST: gi|67022089|gb|CO450838.1|CO450838
EST:     GCGCC-CCT-AATGTCCGTGGAAAGAGTGCTACTTTGCCATCTATCACTG                         AGAAGGATTGGGAAGACATAAAATTTGGTGTCGAAAACGGTGTTGATTTCT
genomic: GCGCCACCTAAATGTCCGTGGAAAGAGTGCTACTTTGCCATCTATCACTGgttagttgat ... ttttcaacagAGAAGGATTGGGAAGACATAAAATTTGGTGTCGAAAACGGTGTTGATTTCT