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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCCTCGGCCGGCGTCCACCAGCTGCACATCTTCATCTTCGTGCTCGCGGTGTTCCATATCGTCTACAGCGTCGCCACCATGGCGCTGGGGCGTCTCAAAgtaagcacacaggcccaagcatcttgaattcaatggacgactctcgcacggtgttagaaaacactcaccacatcttgtcgcgcgcgtgcag

Basic information

species Zea mays
transcript GRMZM2G032219_T01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G032219_T01 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os03g03700.2 (Oryza sativa), 5'ss of exon 4
CTCCTCGGCCGGCGTCCACCAGCTGCACATCTTCATCTTCGTGCTCGCGGTGTTCCATATCGTCTACAGCGTCGCCACCATGGCGCTGGGGCGTCTCAAAgtaagcacacaggcccaagcatcttgaattcaatggacgactctcgcacggtgttagaaaacactcaccacatcttgtcgcgcgcgtgcag------------------------------------------------
 || |||| |||| | |||||||||||||| ||||| ||||||||||||||||||||  ||  |||| |||||  ||||||||| || |||||||||||||| ||     |     || || || | | ||  | | | |     |     | |||| | | | |   ||    |||    |    |||                                                  
GTCATCGGGCGGCATGCACCAGCTGCACATATTCATTTTCGTGCTCGCGGTGTTCCACGTCACCTACTGCGTCATCACCATGGCTCTAGGGCGTCTCAAAgtgagtggctaa--ttaaccacctggcactctgttgtcaagcacggttt--ttttagtaga-atttgtcagtctttgatttggat-tgcgatgagaaaatctattaatttgcccatgcatatgttgttccttggtgtag

upper sequence: GRMZM2G032219_T01 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os06g29110.1 (Oryza sativa), 5'ss of exon 4
CTCCTCGGCCGGCGTCCACCAGCTGCACATCTTCATCTTCGTGCTCGCGGTGTTCCATATCGTCTACAGCGTCGCCACCATGGCGCTGGGGCGTCTCAAAgtaagcacacaggcccaagcatcttgaattcaatggacgactctcgcacggtgttagaaaacactcaccacatcttgtcgcgcgcgtgcag-------------------------------------------------------
 ||  |     || | |||||||||||||| ||||||||||||||||| ||||||||| |   |||| |||||  ||||||||   | ||||| |||||||| ||      |  |    | || || |     |         ||   |    ||   |  |  |||  |    ||||  ||  |  | |                                                        
GTCGGCAAAGAGCATGCACCAGCTGCACATTTTCATCTTCGTGCTCGCCGTGTTCCATGTTACCTACTGCGTCATCACCATGGGTTTAGGGCGCCTCAAAgtgagtttgtcgttctgtccctcatgcacatgttttctctagttctagcaagattgtcagtccttcaa-atggattgtttcg-acaagaaacccaatttattaatttgccagtaaatatataataattggtctttcttggttttag