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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGGAAGTTTTTTGAGGGTTCTGCAGAGCAAATGTATCAGTCCCTTATTGTTACACTGGGTTCGCTGCCAAAGTCAACCCGAGTTTACTGTGGGCATGAGgtacaatctcttttttcagtttcattaaggaggaacctgaatgctagtggaccattgaacctgtatggtggatgtatataaagtaactgtgtctcccttt...

Basic information

species Zea mays
transcript GRMZM2G031825_T05
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G031825_T05 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os03g21460.1 (Oryza sativa), 5'ss of exon 5
TGGGAAGTTTTTTGAGGGTTCTGCAGAGCAAATGTATCAGTCCCTTATTGTTACACTGGGTTCGCTGCCAAAGTCAACCCGAGTTTACTGTGGGCATGAGgtacaatctcttttt---tcagtttcattaaggaggaacctgaatgctagtggaccattgaacctgta-tggtggatgtatataaagta-actgtgtctcccttt
|||||  |||||||||||  |||||||||||||||| || ||||||  ||| |||||||| |||||||| ||| |||| | ||||||||| |||||||||||||| | ||| |||    || || | |    |     |||  ||  | | ||    | ||| ||||| ||    |||||    | |||  ||||||  |     
TGGGAGATTTTTTGAGGGCACTGCAGAGCAAATGTACCAATCCCTTTGTGTAACACTGGGCTCGCTGCCTAAGCCAACTCAAGTTTACTGCGGGCATGAGgtacattttctatttcccccatttgcttctttgctcttcctccatttttgagggatgt-gaatctgtagtgaaatatgtaggatatgtatgctgtgtgcct----

upper sequence: GRMZM2G031825_T05 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA14G36610.2 (Glycine max), 5'ss of exon 5
TGGGAAGTTTTTTGAGGGTTCTGCAGAGCAAATGTATCAGTCCCTTATTGTTACACTGGGTTCGCTGCCAAAGTCAACCCGAGTTTACTGTGGGCATGAGgtacaatctcttttttcagtttcattaaggaggaacctgaatgctagtggaccattgaacctgtatggtggatgtatataaagtaactgtgtctcccttt-------
|||||| |||||||| ||  ||||||| || ||||||||||| |||| ||| ||||| | |||  | ||||||||||| ||||| |||||||| ||||||||| ||      | | ||     | | |  |  ||  |  |||  ||||   ||||||   |  ||  |  | ||||| |   | | || |  |             
TGGGAAATTTTTTGAAGGAACTGCAGAACAGATGTATCAGTCACTTAATGTAACACTCGCTTCATTACCAAAGTCAACTCGAGTATACTGTGGCCATGAGgtaaaaa-----tctccatccatactgaaaaaaaaattctatgggagtg--tcattgatgattgatcttataagtataaatgatgaatgggattaagccacaaaact
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|60343728|gb|DN210701.1|DN210701
EST:     TTACACTGGGTTCGCTGCCAAAGTCAACCCGAGTTTACTGTGGGCATGAG                         TACACTGTGAAGAACCTAAAATTCATGCTGACACTGGAGCCAGAGAATGAG
genomic: TTACACTGGGTTCGCTGCCAAAGTCAACCCGAGTTTACTGTGGGCATGAGgtacaatctc ... tgagttgcagTACACTGTGAAGAACCTAAAATTCATGCTGACACTGGAGCCAGAGAATGAG
EST: gi|32799175|gb|CD951411.1|CD951411
EST:     TTACACTGGGTTCGCTGCCAAAGTCAACCCGAGTTTACTGTGGGCATGAG                         TACACTGTGAAGAACCTAAAATTCATGCTGACACTGGAGCCAGAGAATGAG
genomic: TTACACTGGGTTCGCTGCCAAAGTCAACCCGAGTTTACTGTGGGCATGAGgtacaatctc ... tgagttgcagTACACTGTGAAGAACCTAAAATTCATGCTGACACTGGAGCCAGAGAATGAG
EST: gi|84976888|gb|DW475310.1|DW475310
EST:     GGTTCGCTGCCAAAGTCAACCCGAGTTTACTGTGGGCATGAG                         TACACTGTGAAGAACCTAAAATTCATGCTGACACTGGAGCCAGAGAATGAG
genomic: GGTTCGCTGCCAAAGTCAACCCGAGTTTACTGTGGGCATGAGgtacaatctc ... tgagttgcagTACACTGTGAAGAACCTAAAATTCATGCTGACACTGGAGCCAGAGAATGAG
EST: gi|32857618|gb|CD997299.1|CD997299
EST:     TTACACTGGGTTCGCTGCCAAAGTCAACCCGAGTTTACTGTGGGCATGAG                         TACACTGTGAAGAACCTAAAATTCATGCTGACACTGGAGCCAGAGAATGAG
genomic: TTACACTGGGTTCGCTGCCAAAGTCAACCCGAGTTTACTGTGGGCATGAGgtacaatctc ... tgagttgcagTACACTGTGAAGAACCTAAAATTCATGCTGACACTGGAGCCAGAGAATGAG
EST: gi|32930530|gb|CF035342.1|CF035342
EST:     TTACACTGGGTTCGCTGCCAAAGTCAACCCGAGTTTACTGTGGGCATGAG                         TACACTGTGAAGAACCTAAAATTCATGCTGACACTGGAGCCAGAGAATGAG
genomic: TTACACTGGGTTCGCTGCCAAAGTCAACCCGAGTTTACTGTGGGCATGAGgtacaatctc ... tgagttgcagTACACTGTGAAGAACCTAAAATTCATGCTGACACTGGAGCCAGAGAATGAG
EST: gi|74233977|gb|DT641891.1|DT641891
EST:     TTACACTGGGTTCGCTGCCAAAGTCAACCCGAGTTTACTGTGGGCATGAG                         TACACTGTGAAGAACCTAAAATTCATGCTGACACTGGAGCCAGAGAATGAG
genomic: TTACACTGGGTTCGCTGCCAAAGTCAACCCGAGTTTACTGTGGGCATGAGgtacaatctc ... tgagttgcagTACACTGTGAAGAACCTAAAATTCATGCTGACACTGGAGCCAGAGAATGAG
EST: gi|60357818|gb|DN224791.1|DN224791
EST:     TTACACTGGGTTCGCTGCCAAAGTCAACCCGAGTTTACTGTGGGCATGAG                         TACACTGTGAAGAACCTAAAATTCATGCTGACACTGGAGCCAGAGAATGAG
genomic: TTACACTGGGTTCGCTGCCAAAGTCAACCCGAGTTTACTGTGGGCATGAGgtacaatctc ... tgagttgcagTACACTGTGAAGAACCTAAAATTCATGCTGACACTGGAGCCAGAGAATGAG
EST: gi|32930224|gb|CF035036.1|CF035036
EST:     TTACACTGGGTTCGCTGCCAAAGTCAACCCGAGTTTACTGTGGGCATGAG                         TACACTGTGAAGAACCTAAAATTCATGCTGACACTGGAGCCAGAGAATGAG
genomic: TTACACTGGGTTCGCTGCCAAAGTCAACCCGAGTTTACTGTGGGCATGAGgtacaatctc ... tgagttgcagTACACTGTGAAGAACCTAAAATTCATGCTGACACTGGAGCCAGAGAATGAG
EST: gi|71773157|gb|DR971070.1|DR971070
EST:     TTACACTGGGTTCGCTGCCAAAGTCAACCCGAGTTTACTGTGGGCATGAG                         TACACTGTGAAGAACCTAAAATTCATGCTGACACTGGAGCCAGAGAATGAG
genomic: TTACACTGGGTTCGCTGCCAAAGTCAACCCGAGTTTACTGTGGGCATGAGgtacaatctc ... tgagttgcagTACACTGTGAAGAACCTAAAATTCATGCTGACACTGGAGCCAGAGAATGAG
EST: gi|71430487|gb|DR811537.1|DR811537
EST:     TTACACTGGGTTCGCTGCCAAAGTCAACCCGAGTTTACTGTGGGCATGAG                         TACACTGTGAAGAACCTAAAATTCATGCTGACACTGGAGCCAGAGAATGAG
genomic: TTACACTGGGTTCGCTGCCAAAGTCAACCCGAGTTTACTGTGGGCATGAGgtacaatctc ... tgagttgcagTACACTGTGAAGAACCTAAAATTCATGCTGACACTGGAGCCAGAGAATGAG
EST: gi|67033911|gb|CO462660.1|CO462660
EST:     TTACACTGGGTTCGCTGCCAAAGTCAACCCGAGTTTACTGTGGGCATGAG                         TACACTGTGAAGAACCTAAAATTCATGCTGACACTGGAGCCAGAGAATGAG
genomic: TTACACTGGGTTCGCTGCCAAAGTCAACCCGAGTTTACTGTGGGCATGAGgtacaatctc ... tgagttgcagTACACTGTGAAGAACCTAAAATTCATGCTGACACTGGAGCCAGAGAATGAG
EST: gi|7138069|gb|AW499414.1|AW499414
EST:     TTACACTGGGTTCGCTGCCAAAGTCAACCCGAGTTTACTGTGGGCATGAG                         TACACTGTGAAGAACCTAAAATTCATGCTGACCCTGGAGCCAGAGAATGAG
genomic: TTACACTGGGTTCGCTGCCAAAGTCAACCCGAGTTTACTGTGGGCATGAGgtacaatctc ... tgagttgcagTACACTGTGAAGAACCTAAAATTCATGCTGACACTGGAGCCAGAGAATGAG
EST: gi|60345729|gb|DN212702.1|DN212702
EST:     TTACACTGGGTTCGCTGCCAAAGTCAACCCGAGTTTACTGTGGGCATGAG                         TACACTGTGAAGAACCTAAAATTCATGCTGACACTGGAGCCAGAGAATGAG
genomic: TTACACTGGGTTCGCTGCCAAAGTCAACCCGAGTTTACTGTGGGCATGAGgtacaatctc ... tgagttgcagTACACTGTGAAGAACCTAAAATTCATGCTGACACTGGAGCCAGAGAATGAG
EST: gi|34391313|gb|CF384541.1|CF384541
EST:     TTACACTGGGTTCGCTGCCAAAGTCAACCCGAGTTTACTGTGGGCATGAG                         TACACTGTGAAGAACCTAAAATTCATGCTGACACTGGAGCCAGAGAATGAG
genomic: TTACACTGGGTTCGCTGCCAAAGTCAACCCGAGTTTACTGTGGGCATGAGgtacaatctc ... tgagttgcagTACACTGTGAAGAACCTAAAATTCATGCTGACACTGGAGCCAGAGAATGAG
EST: gi|211460283|gb|FL454155.1|FL454155
EST:     TTACACTGGGTTCGCTGCCAAAGTCAACCCGAGTTTACTGTGGGCATGAG                         TACACTGTGAAGAACCTAAAATTCATGCTGACACTGGAGCCAGAGAATGAG
genomic: TTACACTGGGTTCGCTGCCAAAGTCAACCCGAGTTTACTGTGGGCATGAGgtacaatctc ... tgagttgcagTACACTGTGAAGAACCTAAAATTCATGCTGACACTGGAGCCAGAGAATGAG
EST: gi|211048852|gb|FL416946.1|FL416946
EST:     TCAACCCGAGTTTACTGTGGGCATGAG                         TACACTGTGAAGAACCTAAAATTCATGCTGACACTGGAGCCAGAGAATGAG
genomic: TCAACCCGAGTTTACTGTGGGCATGAGgtacaatctc ... tgagttgcagTACACTGTGAAGAACCTAAAATTCATGCTGACACTGGAGCCAGAGAATGAG
EST: gi|76285780|gb|DV025348.1|DV025348
EST:     TTACACTGGGTTCGCTGCCAAAGTCAACCCGAGTTTACTGTGGGCATGAG                         TACACTGTGAAGAACCTAAAATTCATGCTGACACTGGAGCCAGAGAATGAG
genomic: TTACACTGGGTTCGCTGCCAAAGTCAACCCGAGTTTACTGTGGGCATGAGgtacaatctc ... tgagttgcagTACACTGTGAAGAACCTAAAATTCATGCTGACACTGGAGCCAGAGAATGAG
EST: gi|32800109|gb|CD952345.1|CD952345
EST:     TTACACTGGGTTCGCTGCCAAAGTCAACCCGAGTTTACTGTGGGCATGAG                         TACACTGTGAAGAACCTAAAATTCATGCTGACACTGGAGCCAGAGAATGAG
genomic: TTACACTGGGTTCGCTGCCAAAGTCAACCCGAGTTTACTGTGGGCATGAGgtacaatctc ... tgagttgcagTACACTGTGAAGAACCTAAAATTCATGCTGACACTGGAGCCAGAGAATGAG
EST: gi|51592666|gb|CV071812.1|CV071812
EST:     TTACACTGGGTTCGCTGCCAAAGTCAACCCGAGTTTACTGTGGGCATGAG                         TACACTGTGAAGAACCTAAAATTCGTGCTGACCCTGGAGCCA
genomic: TTACACTGGGTTCGCTGCCAAAGTCAACCCGAGTTTACTGTGGGCATGAGgtacaatctc ... tgagttgcagTACACTGTGAAGAACCTAAAATTCATGCTGACACTGGAGCCA
EST: gi|86466772|gb|DY233142.1|DY233142
EST:     TTACACTGGGTTCGCTGCCAAAGTCAACCCGAGTTTACTGTGGGCATGAG                         TACACTGTGAAGAACCTAAAATTCATGCTGACACTGGAGCCAGAGAATGAG
genomic: TTACACTGGGTTCGCTGCCAAAGTCAACCCGAGTTTACTGTGGGCATGAGgtacaatctc ... tgagttgcagTACACTGTGAAGAACCTAAAATTCATGCTGACACTGGAGCCAGAGAATGAG
EST: gi|13516080|gb|BG518356.1|BG518356
EST:     TACACTGGGTTCGCTGCCAAAGTCAACCCGAGTTTACTGTGGGCATTGAG                         TACACTGTGAAGAACCTAAAATTCATGCTGACACTGGAGCCAGAGAATGA
genomic: TACACTGGGTTCGCTGCCAAAGTCAACCCGAGTTTACTGTGGGCA-TGAGgtacaatctc ... tgagttgcagTACACTGTGAAGAACCTAAAATTCATGCTGACACTGGAGCCAGAGAATGA
EST: gi|60346352|gb|DN213325.1|DN213325
EST:     TTACACTGGGTTCGCTGCCAAAGTCAACCCGAGTTTACTGTGGGCATGAG                         TACACTGTGAAGAACCTAAAATTCATGCTGACACTGGAGCCAGAGAATGAG
genomic: TTACACTGGGTTCGCTGCCAAAGTCAACCCGAGTTTACTGTGGGCATGAGgtacaatctc ... tgagttgcagTACACTGTGAAGAACCTAAAATTCATGCTGACACTGGAGCCAGAGAATGAG
EST: gi|28982871|gb|BQ538319.2|BQ538319
EST:     TTACACTGGGTTCGCTGCCAAAGTCAACCCGAGTTTACTGTGGGCATGAG                         TACACTGTGAAGAACCTAAAATTCATGCTGACACTGGAGCCAGAGAATGAG
genomic: TTACACTGGGTTCGCTGCCAAAGTCAACCCGAGTTTACTGTGGGCATGAGgtacaatctc ... tgagttgcagTACACTGTGAAGAACCTAAAATTCATGCTGACACTGGAGCCAGAGAATGAG
EST: gi|71429897|gb|DR810947.1|DR810947
EST:     TTACACTGGGTTCGCTGCCAAAGTCAACCCGAGTTTACTGTGGGCATGAG                         TACACTGTGAAGAACCTAAAATTCATGCTGACACTGGAGCCAGAGAATGAG
genomic: TTACACTGGGTTCGCTGCCAAAGTCAACCCGAGTTTACTGTGGGCATGAGgtacaatctc ... tgagttgcagTACACTGTGAAGAACCTAAAATTCATGCTGACACTGGAGCCAGAGAATGAG
EST: gi|32826625|gb|CD966303.1|CD966303
EST:     TTACACTGGGTTCGCTGCCAAAGTCAACCCGAGTTTACTGTGGGCATGAG                         TACACTGTGAAGAACCTAAAATTCATGCTGACACTGGAGCCAGAGAATGAG
genomic: TTACACTGGGTTCGCTGCCAAAGTCAACCCGAGTTTACTGTGGGCATGAGgtacaatctc ... tgagttgcagTACACTGTGAAGAACCTAAAATTCATGCTGACACTGGAGCCAGAGAATGAG