1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
CTATCATTTTTCTTTCAACAGCCACACTAAAGGTCATATCAGCTACTATGTTACTAGTAAGGAGGGTGAAGATCCAGCGGTCTTCACCGGAGATACCTTGgttagtatacacatctttcttagagcgatggtttcttttggttgttatatcataacctttttttttttgaaatacag
species | Zea mays |
transcript | GRMZM2G031825_T03 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GATCCGGCGGTCTTCACCGGAGATACCTTG TTCATTGCTGGGTGTGGGAAGTTTTTTGAGGGTTCTGCAGAGCAAATGTATEST: gi|60357818|gb|DN224791.1|DN224791
genomic: GATCCAGCGGTCTTCACCGGAGATACCTTGgttagtatac ... tgaaatacagTTCATTGCTGGGTGTGGGAAGTTTTTTGAGGGTTCTGCAGAGCAAATGTAT
EST: TTACTAGTAAGGAGGGTGAAGATCCAGCGGTCTTCACCGGAGATACCTTG TTCATTGCTGGGTGTGGGAAGNNNNNNNGAGGGTTCTGCAGAGCAAATGTAEST: gi|71773157|gb|DR971070.1|DR971070
genomic: TTACTAGTAAGGAGGGTGAAGATCCAGCGGTCTTCACCGGAGATACCTTGgttagtatac ... tgaaatacagTTCATTGCTGGGTGTGGGAAG-TTTTTTGAGGGTTCTGCAGAGCAAATGTA
EST: TACTAGTAAGGAGGGTGAAGATCCAGCGGTCTTTCACCGGAGATACCTTG TTCATTGCTGGGTGTGGGAAGTTTTTTGAGGGTTCTGCAGAGCAAATGTATEST: gi|60343728|gb|DN210701.1|DN210701
genomic: TACTAGTAAGGAGGGTGAAGATCCAGCGGTC-TTCACCGGAGATACCTTGgttagtatac ... tgaaatacagTTCATTGCTGGGTGTGGGAAGTTTTTTGAGGGTTCTGCAGAGCAAATGTAT
EST: TTACTAGTAAGGAGGGTGAAGATCCAGCGGTCTTCACCGGAGATACCTTG TTCATTGCTGGGTGTGGGAAGTTTTTTGAGGGTTCTGCAGAGCAAATGTATEST: gi|67033911|gb|CO462660.1|CO462660
genomic: TTACTAGTAAGGAGGGTGAAGATCCAGCGGTCTTCACCGGAGATACCTTGgttagtatac ... tgaaatacagTTCATTGCTGGGTGTGGGAAGTTTTTTGAGGGTTCTGCAGAGCAAATGTAT
EST: TTACTAGTAAGGAGGGTGAAGATCCAGCGGTCTTCACCGGAGATACCTTG TTCATTGCTGGGTGTGGGAAGTTTTTTGAGGGTTCTGCAGAGCAAATGTATEST: gi|60345729|gb|DN212702.1|DN212702
genomic: TTACTAGTAAGGAGGGTGAAGATCCAGCGGTCTTCACCGGAGATACCTTGgttagtatac ... tgaaatacagTTCATTGCTGGGTGTGGGAAGTTTTTTGAGGGTTCTGCAGAGCAAATGTAT
EST: TTACTAGTAAGGAGGGTGAAGATCCAGCGGTCTTCACCGGAGATACCTTG TTCATTGCTGGGTGTGGGAAGNNNNNNNGAGGGTTCTGCAGAGCAAATGTAEST: gi|32910784|gb|CF015596.1|CF015596
genomic: TTACTAGTAAGGAGGGTGAAGATCCAGCGGTCTTCACCGGAGATACCTTGgttagtatac ... tgaaatacagTTCATTGCTGGGTGTGGGAAG-TTTTTTGAGGGTTCTGCAGAGCAAATGTA
EST: TTACTAGTAAGGAGGGTGAAGATCCAGCGGTCTTCACCGGAGATACCTTG TTCATTGCTGGGTGTGGGAAGTTTTTTGAGGGTTCTGCAGAGCAAATGTATEST: gi|211460283|gb|FL454155.1|FL454155
genomic: TTACTAGTAAGGAGGGTGAAGATCCAGCGGTCTTCACCGGAGATACCTTGgttagtatac ... tgaaatacagTTCATTGCTGGGTGTGGGAAGTTTTTTGAGGGTTCTGCAGAGCAAATGTAT
EST: TTACTAGTAAGGA-GGTGAAGATCCAGCGGTCTTCACCGGAGATACCTTG TTCATTGCTGGGTGTGGGAAGTTTTTTGAGGGTTCTGCAGAGCAAATGTATEST: gi|74233977|gb|DT641891.1|DT641891
genomic: TTACTAGTAAGGAGGGTGAAGATCCAGCGGTCTTCACCGGAGATACCTTGgttagtatac ... tgaaatacagTTCATTGCTGGGTGTGGGAAGTTTTTTGAGGGTTCTGCAGAGCAAATGTAT
EST: TTCTAGTAAGGAGGGTGAAGATCCAGCGGTCTTCACCGGGAGATACCTTG TTCATTGCTGGGTGTGGGAAGTTTTTTGAGGGTTCTGCAGAGCAAATATATEST: gi|76285780|gb|DV025348.1|DV025348
genomic: TACTAGTAAGGAGGGTGAAGATCCAGCGGTCTTCACC-GGAGATACCTTGgttagtatac ... tgaaatacagTTCATTGCTGGGTGTGGGAAGTTTTTTGAGGGTTCTGCAGAGCAAATGTAT
EST: TTACTAGTAAGGAGGGTGAAGATCCAGCGGTCTTCACCGGAGATACCTTG TTCATTGCTGGGTGTGGGAAGTTTTTTGAGGGCTCTGCAGAGCAAATGTATEST: gi|32800109|gb|CD952345.1|CD952345
genomic: TTACTAGTAAGGAGGGTGAAGATCCAGCGGTCTTCACCGGAGATACCTTGgttagtatac ... tgaaatacagTTCATTGCTGGGTGTGGGAAGTTTTTTGAGGGTTCTGCAGAGCAAATGTAT
EST: GATCCAGCGGTCTTCACCGGAGATACCTTG TTCATTGCTGGGTGTGGGGAGTTTTTTGAGGGTTCTGCAGAGCAAATGTATEST: gi|86466772|gb|DY233142.1|DY233142
genomic: GATCCAGCGGTCTTCACCGGAGATACCTTGgttagtatac ... tgaaatacagTTCATTGCTGGGTGTGGGAAGTTTTTTGAGGGTTCTGCAGAGCAAATGTAT
EST: TCCAGCGGTCTTCACCGGAGATACCTTG TTCATTGCTGGGTGTGGGAAGTTTTTTGAGGGTTCTGCAGAGCAAATGTATEST: gi|60346352|gb|DN213325.1|DN213325
genomic: TCCAGCGGTCTTCACCGGAGATACCTTGgttagtatac ... tgaaatacagTTCATTGCTGGGTGTGGGAAGTTTTTTGAGGGTTCTGCAGAGCAAATGTAT
EST: TTACTAGTAAGGAGGGTGAAGATCCAGCGGTCTTCACCGGAGATACCTTG TTCATTGCTGGGTGTGGGAAGTTTTTTGAGGGTTCTGCAGAGCAAATGTATEST: gi|32826625|gb|CD966303.1|CD966303
genomic: TTACTAGTAAGGAGGGTGAAGATCCAGCGGTCTTCACCGGAGATACCTTGgttagtatac ... tgaaatacagTTCATTGCTGGGTGTGGGAAGTTTTTTGAGGGTTCTGCAGAGCAAATGTAT
EST: GCGGTCTTCACCGGAGATACCTTG TTCATTGCTGGGTGTGGGAAGTTTTTTGAGGGTTCTGCAGAGCAAATGTAT
genomic: GCGGTCTTCACCGGAGATACCTTGgttagtatac ... tgaaatacagTTCATTGCTGGGTGTGGGAAGTTTTTTGAGGGTTCTGCAGAGCAAATGTAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTATCATTTTTCTTTCAACAGCCACACTAAAGGTCATATCAGCTACTATGTTACTAGTAAGGAGGGTGAAGATCCAGCGGTCTTCACCGGAGATACCTTGgttagtatacacatctttcttagagcgatggtttcttttggttgttatatcataacctttttttttttgaaatacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT