Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCTTGGTTCAGGTTGAAGTTTCCTCACTTGACATGTGGAAGCCTTGCAAGTTCAGGGGTTGTTCTTGCTGTATACAACTTTACCGATTTTGACAAACAGgtttgtgcaggagcagatcttgatttatttattaaacattaaagcattcaagtctacacctgaactcctgaagttctacttctgtgtatgatttacatctctgtag

Basic information

species Zea mays
transcript GRMZM2G031572_T01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G031572_T01 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os10g36760.1 (Oryza sativa), 5'ss of exon 4
TGCTTGGTTCAGGTTGAAGTTTCCTCACTTGACATGTGGAAGCCTTGCAAGTTCAGGGGTTGTTCTTGCTGTATACAACTTTACCGATTTTGACAAACAGgtttgtgcaggagcagatcttgatttatttattaaacattaaagcattcaagtctacacctgaactcctgaagttctacttctgtgtatgatttacatctctgtag
|||||||||||| |||||||| |||||||||||||||||||| ||||| |||||||| ||||||||| |||| ||||||| ||| || ||||||||||||||   | |||| ||||||| | | | || |  |||   |||  |||||   |  | ||||| ||       |||||||| | | || |||||| ||||||||| ||
TGCTTGGTTCAGATTGAAGTTCCCTCACTTGACATGTGGAAGTCTTGCGAGTTCAGGAGTTGTTCTTTCTGTTTACAACTATACTGACTTTGACAAACAGgtaactacaggtgcagatccttaatcatgttataa-tgttatcgcattttggcatgcacctaaa-------agttctacctttctgcatgattcacatctctgaag

upper sequence: GRMZM2G031572_T01 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA16G24270.1 (Glycine max), 5'ss of exon 5
TGCTTGGTTCAGGTTGAAGTTTCCTCACTTGACATGTGGAAGCCTTGCAAGTTCAGGGGTTGTTCTTGCTGTATACAACTTTACCGATTTTGACAAACAGgt------------ttgtg---caggagcagatcttgatttatttatt--aaacattaaagca--ttcaagtctacacctg---aactcctg--aagttctacttctg--tgtatgatttacatctctgtag-----
||| |||||| |  | |||||||| || || ||||||||||| || |||||||| |  |||||||||||||| || ||||| || || | |||  |||||||            || ||   ||    ||  | ||| ||| | ||||  | |   ||||  |  |  ||||   |   |    || | | |  || || |   | |   ||  ||| ||  |||| |         
TGCATGGTTCCGTCTCAAGTTTCCCCATTTAACATGTGGAAGTCTGGCAAGTTCTGCAGTTGTTCTTGCTGTTTATAACTTCACAGAATATGATCAACAGgtgaacatagttatttttgtttcacatacatcttttgttttttctattctagatgctaaaataagtcaaagttcccttttattcaatttcagtcaaattttgaatttagttgagtgagttctatctttcacatgcag

upper sequence: GRMZM2G031572_T01 (Zea mays), 5'ss of exon 4
lower sequence: AT4G36190.1 (Arabidopsis thaliana), 5'ss of exon 4
TGCTTGGTTCAGGTTGAAGTTTCCTCACTTGACATGTGGAAGCCTTGCAAGTTCAGGGGTTGTTCTTGCTGTATACAACTTTACCGATTTTGACAAACAGgtttgtgcaggagcagatcttgatttatttattaaacattaaagcattcaagtctacacctgaactcctgaagttctacttctgtgtatgatttacatctctgtag
|||||||||| || | ||||| ||||| ||||| ||||||||||| || |||||||  ||||||| |||||| ||| | ||  |||| |||||  ||||||| |  |    |  |  |     ||||  |    ||   |   |  |     | || |  | |  | ||||     |     | | |||   |||    |   |||
TGCTTGGTTCCGGCTTAAGTTCCCTCATTTGACCTGTGGAAGCCTCGCTAGTTCAGCAGTTGTTCGTGCTGTCTACGAATTCCCCGAATTTGATCAACAGgtattcgttacaata--ttcaactttaagtgaagaaatgttgtgtttcttcatatagagtttagttgctgacagaatcgagatttttataccttat---tgaatag

upper sequence: GRMZM2G031572_T01 (Zea mays), 5'ss of exon 4
lower sequence: AT4G36195.3 (Arabidopsis thaliana), 5'ss of exon 5
TGCTTGGTTCAGGTTGAAGTTTCCTCACTTGACATGTGGAAGCCTTGCAAGTTCAGGGGTTGTTCTTGCTGTATACAACTTTACCGATTTTGACAAACAGgtttgtgcaggagcagatcttgatttatttattaaacattaaa-gcattcaagtctacacctgaactcctgaagttctacttctgtgtatgatttacatctctgtag
|||||||||| || | ||||| ||||| ||||| |||||||||||||| ||||| |  ||||||| ||| || ||| | ||  | || |||||  ||||||| | ||    |  ||||     ||||  |   | ||||     |  |     | || |  | |  | ||||     |     | | | ||  |||    |  ||||
TGCTTGGTTCCGGCTTAAGTTCCCTCATTTGACCTGTGGAAGCCTTGCTAGTTCTGCAGTTGTTCGTGCAGTCTACGAATTCCCTGAATTTGATCAACAGgtatttgtttca--agattaaactttaaatga-agacatggtgtgtttcttcatatagagtttagttgctgacagaatcgaaatttttgtgccttat---tgagtag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71441298|gb|DR822348.1|DR822348
EST:     GTTCAGGGGTTGTTCTTGCTGTATACAACTTTACCGATTTTGACAAACAG                         ATTGGGATCTCTGCTGGTCCTGAATGCAAGGCAGCACTTCAAGAAATAACA
genomic: GTTCAGGGGTTGTTCTTGCTGTATACAACTTTACCGATTTTGACAAACAGgtttgtgcag ... atctctgtagATTGGGATCTCTGCTGGTCCTGAATGCAAGGCAGCACTTCAAGAAATAACA
EST: gi|31357650|gb|CD442007.1|CD442007
EST:     GTTCAGGGGTTGTTCTTGCTGTATACAACTTTACCGATTTTGACAAACAG                         ATTGGGATCTCTGCTGGTCCTGAATGCAAGGCAGCACTTCAAGAGATAACA
genomic: GTTCAGGGGTTGTTCTTGCTGTATACAACTTTACCGATTTTGACAAACAGgtttgtgcag ... atctctgtagATTGGGATCTCTGCTGGTCCTGAATGCAAGGCAGCACTTCAAGAAATAACA
EST: gi|31355151|gb|CD439508.1|CD439508
EST:     ATTTTGACAAACAG                         ATTGGGATCTCTGCTGGTCCTGCATGCAAGGCAGCACTTCAAGAAATAACA
genomic: ATTTTGACAAACAGgtttgtgcag ... atctctgtagATTGGGATCTCTGCTGGTCCTGAATGCAAGGCAGCACTTCAAGAAATAACA