1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
ATACCTCAAGGGAGCTTCAGATGAACATCTTTCTCAGTTTTTGCAGTTAgtaagtttttaatattgtgtatagctcctgaaatctgaaaactcttgacgtctgtaatcatgtgaaaaattcgtacag
species | Zea mays |
transcript | GRMZM2G031107_T01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: ATACCTCAAGGGAGCTTCAGATGAACATCTTTCTCAGTTTTTGCAGTTA GTAAAATATGTTAGTGGCTCCTATGATAGGGTGGAAGGATTTGAGTTATTAEST: gi|20301108|gb|BQ164051.1|BQ164051
genomic: ATACCTCAAGGGAGCTTCAGATGAACATCTTTCTCAGTTTTTGCAGTTAgtaagttttt ... attcgtacagGTAAAATATGTTAGTGGCTCCTATGATAGGGTGGAAGGATTTGAGTTATTA
EST: ATACCTCAAGGGAGCTTCAGATGAACATCTTTCTCAGCTTTTGCAGCTA GTAAAATATGTTAGTGGCTCCTATGATAGGGGGGAAGGATTTGAGTTATTAEST: gi|33100725|gb|CF060685.1|CF060685
genomic: ATACCTCAAGGGAGCTTCAGATGAACATCTTTCTCAGTTTTTGCAGTTAgtaagttttt ... attcgtacagGTAAAATATGTTAGTGGCTCCTATGATAGGGTGGAAGGATTTGAGTTATTA
EST: ATACCTCAAGGGAGCTTCAGATGAACATCTTTCTCAGTTTTTGCAGTTA GTAAAATATGTTAGTGGCTCCTATGATAGGGTGGAAGGATTTGAGTTATTAEST: gi|33103231|gb|CF063191.1|CF063191
genomic: ATACCTCAAGGGAGCTTCAGATGAACATCTTTCTCAGTTTTTGCAGTTAgtaagttttt ... attcgtacagGTAAAATATGTTAGTGGCTCCTATGATAGGGTGGAAGGATTTGAGTTATTA
EST: ATACCTCAAGGGAGCTTCAGATGAACATCTTTCTCAGTTTTTGCAGTTA GTAAAATATGTTAGTGGCTCCTATGATAGGGTGGAAGGATTTGAGTTATTAEST: gi|78119964|gb|DV538348.1|DV538348
genomic: ATACCTCAAGGGAGCTTCAGATGAACATCTTTCTCAGTTTTTGCAGTTAgtaagttttt ... attcgtacagGTAAAATATGTTAGTGGCTCCTATGATAGGGTGGAAGGATTTGAGTTATTA
EST: ATACCTCAAGGGAGCTTCAGATGAACATCTTTCTCAGTTTTTGCAGTTA GTAAAATATGTTAGTGGCTCCTATGATAGGGTGGAAGGATTTGAGTTATTA
genomic: ATACCTCAAGGGAGCTTCAGATGAACATCTTTCTCAGTTTTTGCAGTTAgtaagttttt ... attcgtacagGTAAAATATGTTAGTGGCTCCTATGATAGGGTGGAAGGATTTGAGTTATTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATACCTCAAGGGAGCTTCAGATGAACATCTTTCTCAGTTTTTGCAGTTAgtaagtttttaatattgtgtatagctcctgaaatctgaaaactcttgacgtctgtaatcatgtgaaaaattcgtacag
- - - - - GGAGCT
- - - - - GAGCTT
- - - - - - - - CAGATG