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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTCTCGGTATCCCCTGGGATGTTGACACTGAAGGGTTACGAGAGTACATGGCCAAGTTTGGACCCCTAGATGATTGTGTCGTCATGAAGgtttgccataatttcacattttatattgaatatcagatgctactgttttgtgtttgcttacccttaattttgtgtcgtttttaattcatgaagtacttga...

Basic information

species Zea mays
transcript GRMZM2G030902_T03
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G030902_T02 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os01g71770.1 (Oryza sativa), 5'ss of exon 3
GTTCTCGGTATCCCCTGGGATGTTGACACTGAAGGGTTACGAGAGTACATGGCCAAGTTTGGACCCCTAGATGATTGTGTCGTCATGAAGgtttgccataatttcacattttatattgaatatcagatgctac-tgttttgtgtttgct---tacccttaat-tttgtgtcgtttttaattcatgaagtacttga
||||| || ||||| |||||||| ||||||||||| ||| |||||||||||| |||||||||||||||||||||||| |||||||||||||||||    ||||||| |||    ||   |||| |||||| |  |  |||||||||  |   | || ||||  |||| |  |  | |  ||| ||   |      
GTTCTTGGAATCCCATGGGATGTGGACACTGAAGGATTAAGAGAGTACATGGGCAAGTTTGGACCCCTAGATGATTGCGTCGTCATGAAGgtttgtagcaatttcatattcagaataagatattagatgccatattctttgtgtttattacatgccattaagatttgaggagaatatgtttcttgtcttt-----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16380186|gb|BI993362.1|BI993362
EST:     GAGAGTACATGGCCAAGTTTGGACCCCTAGATGATTGTGTCGTCATGAAG                         GAGCGGTCTTCTGGGCGATCTCGTGGGTTTGGCTATGTAACATTCGCATCA
genomic: GAGAGTACATGGCCAAGTTTGGACCCCTAGATGATTGTGTCGTCATGAAGgtttgccata ... aaaataacagGAGCGGTCTTCTGGGCGATCTCGTGGGTTTGGCTATGTAACATTCGCATCA
EST: gi|211330813|gb|FL315989.1|FL315989
EST:     GAGAGTACATGGCCAAGTTTGGACCCCTAGATGATTGTGTCGTCATGAAG                         GAGCGGTCTTCTGGGCGATCTCGTGGGTTTGGCTATGTAACATTCGCATCA
genomic: GAGAGTACATGGCCAAGTTTGGACCCCTAGATGATTGTGTCGTCATGAAGgtttgccata ... aaaataacagGAGCGGTCTTCTGGGCGATCTCGTGGGTTTGGCTATGTAACATTCGCATCA
EST: gi|211099331|gb|FL362931.1|FL362931
EST:     GAGAGTACATGGCCAAGTTTGGACCCCTAGATGATTGTGTCGTCATGAAG                         GAGCGGTCTTCTGGGCGATCTCGTGGGTTTGGCTATGTAACATTCGCATCA
genomic: GAGAGTACATGGCCAAGTTTGGACCCCTAGATGATTGTGTCGTCATGAAGgtttgccata ... aaaataacagGAGCGGTCTTCTGGGCGATCTCGTGGGTTTGGCTATGTAACATTCGCATCA