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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGTGCTACAGCTGCAACGGCTACGGCTACGGCTAGGCCACCTCCTACACTGGACATCTTCCCAGCTTGGCCTATGAGGTCTCGTCTTCACACGCCCAAGgtatggagtggagactggccgctagctacaacttgtatatagagtttattttatctcttctgttcacatcatatatatacagacgacagtaccagcaagcaagaacaaaagtttgcaactgctctccctttttttttctctcacccttttgcacgtcaggagtgctcgaatgtgacagcag

Basic information

species Zea mays
transcript GRMZM2G030877_T02
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G030877_T02 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os11g05480.1 (Oryza sativa), 5'ss of exon 4
-TGGTGCTACAGCTGCAACGGCTACGGCTACGGCTAGGCCACCTCCTACACTGGACATCTTCCCAGCTTGGCCTATGAGGTCTCGTCTTCACACGCCCAAGgtatggagtgga--gactggccgctagctacaacttgtatatagagtttattttatctcttctgttcacatcatatatatacagacgacagtaccagcaagcaagaacaaaagtttgcaactgctctccctttttttttctctcacccttttgcacgtcaggagtgctcgaatgtgacagcag
      | ||  |||| || ||| ||||||| |||||||| |||||||||||||||||||||||| | ||||||||||||||||   | ||||| |||||||||||   || |   |||| |  ||   |||  | | |   | |  |  |    || |  |   || ||| ||  |||   |    |  | ||    || ||   |   |||||||   || ||| |    |      |  ||    |||| ||| ||                         
CCTTCTCCACCACTGCTACTGCTGCGGCTACAGCTAGGCCTCCTCCTACACTGGACATCTTCCCATCCTGGCCTATGAGGTCTC---TCCACACACCCAAGgtatgctttgcatctactgtctactg--tactgcctattggttgtatcaacgacatgtggt---tttaca-caagtattagctctggtaaatatt--catgctgcatataaagttttttacagctgtggtctgagccctggctt-tgctttggcatgttgtag--------------------

upper sequence: GRMZM2G030877_T02 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os12g05680.1 (Oryza sativa), 5'ss of exon 4
TGGTGCTACAGCTGCAACGGCTACGGCTACGGCTAGGCCACCTCCTACACTGGACATCTTCCCAGCTTGGCCTATGAGGTC---TCGTCTTCACACGCCCAAGgtatggagtggagactggccgctagctacaacttgtatatagagtttattttatctcttctgttcacatcatatatatacagacgacagtaccagcaagcaagaacaaaagtttgcaactgctctccctttttttttctctcacccttttgcacgtcaggagtgctcgaatgtgacagcag
   |||| | || || || || || || || |||||||| ||| |||||||||||||||||||| | ||||||||||||        |||||  || || ||||||   | | |||  ||  | ||| || ||  ||  || |    |  |    |        |||       | | | |  ||                                                                                                   
---TGCTGCTGCAGCTACAGCAACAGCAACAGCTAGGCCTCCTGCTACACTGGACATCTTCCCATCCTGGCCTATGAGGAGGAGCTCTCTTCCAACACCGAAGgtaaatacttgagcatgatcccta-ctgcatttttcatttt---tgcaaagcaaaggcaaagttacagctgtgt-tctgtag---------------------------------------------------------------------------------------------------