1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
CGACGACGGACAGACGGATCTGCTGCACTCGTACGGGCTAGGGTATCCCGAGCCCAACGTCGTCTTCGCGCTGTGCAGAGGCAGCCGCTCCTCGCCAGCAgtacgtgtgtcgtcgtctcgtccctgtcgaccctccccactgcccccgagtcccagtctcccagactgagtcgcctcacgtggcgtgccgttgggtttgtctgtcctgcctgcag
species | Zea mays |
transcript | GRMZM2G030712_T04 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GCCCCAACGTCGTCTTCGCGCTGTGCAGAGGCAGCCGCTCCTCCCCAGCA CTGCGCGTGTACACGGCGGAGGACGTGTCGAACGAGCTGGAGCGGGCCAAGEST: gi|149027590|gb|EE046581.2|EE046581
genomic: G-CCCAACGTCGTCTTCGCGCTGTGCAGAGGCAGCCGCTCCTCGCCAGCAgtacgtgtgt ... ctgcctgcagCTGCGCGTGTACACGGCGGAGGACGTGTCGAACGAGCTGGAGCGGGCCAAG
EST: AGCCCAACGTCGTCTTCGCGCTGTGCAGAGGCAGCCGCTCCTCGCCAGCA CTGCGCGTGTACACGGCGGAGGACGTGTCGAACGAGCTGGAGCGGGCCAAGEST: gi|29130825|gb|CB381529.1|CB381529
genomic: AGCCCAACGTCGTCTTCGCGCTGTGCAGAGGCAGCCGCTCCTCGCCAGCAgtacgtgtgt ... ctgcctgcagCTGCGCGTGTACACGGCGGAGGACGTGTCGAACGAGCTGGAGCGGGCCAAG
EST: AGCCCAACGTCGTCTTCGCGCTGTGCAGAGGCAGCCGCTCCTCGCCAGCA CTGCGCGTGTACACGGCGGAGGACGTGTCGAACGAGCTGGAGCGGGCCAAGEST: gi|60399493|gb|DN232305.1|DN232305
genomic: AGCCCAACGTCGTCTTCGCGCTGTGCAGAGGCAGCCGCTCCTCGCCAGCAgtacgtgtgt ... ctgcctgcagCTGCGCGTGTACACGGCGGAGGACGTGTCGAACGAGCTGGAGCGGGCCAAG
EST: AGCCCAACGTCGTCTTCGCGCTGTGCAGAGGCAGCCGCTCCTCGCCAGCA CTGCGCGTGTACACGGCGGAGGACGTGTCGAACGAGCTGGAGCGGGCCAAGEST: gi|78113611|gb|DV532002.1|DV532002
genomic: AGCCCAACGTCGTCTTCGCGCTGTGCAGAGGCAGCCGCTCCTCGCCAGCAgtacgtgtgt ... ctgcctgcagCTGCGCGTGTACACGGCGGAGGACGTGTCGAACGAGCTGGAGCGGGCCAAG
EST: AGCCCAACGTCGTCTTCGCGCTGTGCAGAGGCAGCCGCTCCTCGCCAGCA CTGCGCGTGTACACGGCGGAGGACGTGTCGAACGAGCTGGAGCGGGCCAAGEST: gi|28930819|gb|CB334180.1|CB334180
genomic: AGCCCAACGTCGTCTTCGCGCTGTGCAGAGGCAGCCGCTCCTCGCCAGCAgtacgtgtgt ... ctgcctgcagCTGCGCGTGTACACGGCGGAGGACGTGTCGAACGAGCTGGAGCGGGCCAAG
EST: AGCCCAACGTCGTCTTCGCGCTGTGCAGAGGCAGCCGCTCCTCGCCAGCA CTGCGCGTGTACACGGCGGAGGACGTGTCGAACGAGCTGGAGCGGGCCAAGEST: gi|29129867|gb|CB380571.1|CB380571
genomic: AGCCCAACGTCGTCTTCGCGCTGTGCAGAGGCAGCCGCTCCTCGCCAGCAgtacgtgtgt ... ctgcctgcagCTGCGCGTGTACACGGCGGAGGACGTGTCGAACGAGCTGGAGCGGGCCAAG
EST: CAGCCGCTCCTCGCCAGCA CTGCGCGTGTACACGGCGGAGGACGTGTCGAACGAGCTGGAGCGGGCCAAGEST: gi|30306390|gb|CD001063.1|CD001063
genomic: CAGCCGCTCCTCGCCAGCAgtacgtgtgt ... ctgcctgcagCTGCGCGTGTACACGGCGGAGGACGTGTCGAACGAGCTGGAGCGGGCCAAG
EST: AACGTCGTCTTCGCGCTGTGCAGAGGCAGCCGCTCCTCGCCAGCA CTGCGCGTGTACACGGCGGAGGACGTGTCGAACGAGCTGGAGCGGGCCAAG
genomic: AACGTCGTCTTCGCGCTGTGCAGAGGCAGCCGCTCCTCGCCAGCAgtacgtgtgt ... ctgcctgcagCTGCGCGTGTACACGGCGGAGGACGTGTCGAACGAGCTGGAGCGGGCCAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGACGACGGACAGACGGATCTGCTGCACTCGTACGGGCTAGGGTATCCCGAGCCCAACGTCGTCTTCGCGCTGTGCAGAGGCAGCCGCTCCTCGCCAGCAgtacgtgtgtcgtcgtctcgtccctgtcgaccctccccactgcccccgagtcccagtctcccagactgagtcgcctcacgtggcgtgccgttgggtttgtctgtcctgcctgcag
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