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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGCATCAAAAGCAGATGTCCATGAACCAGAGATATTTGTTGATCATGATGTATACCTGCCACCTGCCCCAAGCCATCATGATGCTCATGGCCAGTTTTGgtaatattttctatgccactggctatttgtttggagattggactattattttctatgcctctctgctactggttggcatgctacaatagtattttccata...

Basic information

species Zea mays
transcript GRMZM2G030167_T01
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6095442|gb|AW120109.1|AW120109
EST:     GTATACCTGCCACCTGCCCCAAGCCATCATGATGCTCATGGCCAGTTTTG                         CTCTGGAGGTATTGTATTGGCTTCTCGAGATGGAAAGATTGTGTTTGAGAG
genomic: GTATACCTGCCACCTGCCCCAAGCCATCATGATGCTCATGGCCAGTTTTGgtaatatttt ... gtttgttcagCTCTGGAGGTATTGTATTGGCTTCTCGAGATGGAAAGATTGTGTTTGAGAG
EST: gi|37377401|gb|CF625300.1|CF625300
EST:     GTATACCTGCCACCTGCCCCAAGCCATCATGATGCTCATGGCCAGTTTTG                         CTCTGGAGGTATTGTATTGGCTTCTCGAGATGGAAAGATTGTGTTTGAGAG
genomic: GTATACCTGCCACCTGCCCCAAGCCATCATGATGCTCATGGCCAGTTTTGgtaatatttt ... gtttgttcagCTCTGGAGGTATTGTATTGGCTTCTCGAGATGGAAAGATTGTGTTTGAGAG
EST: gi|5846896|gb|AI999979.1|AI999979
EST:     GTATACCTGCCACCTGCCCCAAGCCATCATGATGCTCATGGCCAGTTTTG                         CTCTGGAGGTATTGTATTGGCTTCTCGAGATGGAAAGATTGTGTTTGAGAG
genomic: GTATACCTGCCACCTGCCCCAAGCCATCATGATGCTCATGGCCAGTTTTGgtaatatttt ... gtttgttcagCTCTGGAGGTATTGTATTGGCTTCTCGAGATGGAAAGATTGTGTTTGAGAG
EST: gi|71309730|gb|DR791144.1|DR791144
EST:     GTATACCTGCCACCTGCCCCAAGCCATCATGATGCTCATGGCCAGTTTTG                         CTCTGGAGGTATTGTATTGGCTTCTCGAGATGGAAAGATTGTGTTTGAGAG
genomic: GTATACCTGCCACCTGCCCCAAGCCATCATGATGCTCATGGCCAGTTTTGgtaatatttt ... gtttgttcagCTCTGGAGGTATTGTATTGGCTTCTCGAGATGGAAAGATTGTGTTTGAGAG
EST: gi|8577252|gb|BE129889.1|BE129889
EST:     GTATACCTGCCACCTGCCCCAAGCCATCATGATGCTCATGGCCAGTTTTG                         CTCTGGAGGTATTGTATTGGCTTCTCGAGATGGAAAGATTGTGTTTGAGAG
genomic: GTATACCTGCCACCTGCCCCAAGCCATCATGATGCTCATGGCCAGTTTTGgtaatatttt ... gtttgttcagCTCTGGAGGTATTGTATTGGCTTCTCGAGATGGAAAGATTGTGTTTGAGAG
EST: gi|148991268|gb|EE032738.2|EE032738
EST:     GTATACCTGCCACCTGCCCCAAGCCATCATGATGCTCATGGCCAGTTTTG                         CTCTGGAGGTATTGTATTGGCTTCTCGAGATGGAAAGATTGTGTTTGAGAG
genomic: GTATACCTGCCACCTGCCCCAAGCCATCATGATGCTCATGGCCAGTTTTGgtaatatttt ... gtttgttcagCTCTGGAGGTATTGTATTGGCTTCTCGAGATGGAAAGATTGTGTTTGAGAG
EST: gi|33101816|gb|CF061776.1|CF061776
EST:     GTATACCTGCCACCTGCCCCAAGCCATCATGATGCTCATGGCCAGTTTTG                         CTCTGGAGGTATTGTATTGGCTTCTCGAGATGGAAAGATTGTGTTTGAGAG
genomic: GTATACCTGCCACCTGCCCCAAGCCATCATGATGCTCATGGCCAGTTTTGgtaatatttt ... gtttgttcagCTCTGGAGGTATTGTATTGGCTTCTCGAGATGGAAAGATTGTGTTTGAGAG
EST: gi|5706207|gb|AI941983.1|AI941983
EST:     CTGCCACCTGCCCCAAGCCATCATGATGCTCATGGCCAGTTTTG                         CTCTGGAGGTATTGTATTGGCTTCTCGAGATGGAAAGATTGTGTTTGAGAG
genomic: CTGCCACCTGCCCCAAGCCATCATGATGCTCATGGCCAGTTTTGgtaatatttt ... gtttgttcagCTCTGGAGGTATTGTATTGGCTTCTCGAGATGGAAAGATTGTGTTTGAGAG
EST: gi|93280879|gb|EB673143.1|EB673143
EST:     GTATACCTGCCACCTGCCCCAAGCCATCATGATGCTCATGGCCAGTTTTG                         CTCTGGAGGTATTGTATTGGCTTCTCGAGATGGAAAGATTGTGTTTGAGAG
genomic: GTATACCTGCCACCTGCCCCAAGCCATCATGATGCTCATGGCCAGTTTTGgtaatatttt ... gtttgttcagCTCTGGAGGTATTGTATTGGCTTCTCGAGATGGAAAGATTGTGTTTGAGAG
EST: gi|116817175|gb|EC859992.1|EC859992
EST:     GTATACCTGCCACCTGCCCCAAG-CATCATGATGCTCATGGCCAG-TTTG                         CTCTGGAGGTATTGTATTGGCTTCTCGAGATGGAAAGATTGTGTTTGAGAG
genomic: GTATACCTGCCACCTGCCCCAAGCCATCATGATGCTCATGGCCAGTTTTGgtaatatttt ... gtttgttcagCTCTGGAGGTATTGTATTGGCTTCTCGAGATGGAAAGATTGTGTTTGAGAG
EST: gi|60343554|gb|DN210527.1|DN210527
EST:     GTATACCTGCCACCTGCCCCAAGCCATCATGATGCTCATGGCCAGTTTTG                         CTCTGGAGGTATTGTATTGGCTTCTCGAGATGGAAAGATTGTGTTTGAGAG
genomic: GTATACCTGCCACCTGCCCCAAGCCATCATGATGCTCATGGCCAGTTTTGgtaatatttt ... gtttgttcagCTCTGGAGGTATTGTATTGGCTTCTCGAGATGGAAAGATTGTGTTTGAGAG
EST: gi|32865148|gb|CF004830.1|CF004830
EST:     GTATACCTGCCACCTGCCCCAAGCCATCATGATGCTCATGGCCAGTTTTG                         CTCTGGAGGTATTGTATTGGCTTCTCGAGATGGAAAGATTGTGTTTGAGAG
genomic: GTATACCTGCCACCTGCCCCAAGCCATCATGATGCTCATGGCCAGTTTTGgtaatatttt ... gtttgttcagCTCTGGAGGTATTGTATTGGCTTCTCGAGATGGAAAGATTGTGTTTGAGAG
EST: gi|211412071|gb|FL337699.1|FL337699
EST:     TACCCTGG-ACCNTGCCCCA-GC-ATCATGATGCTCATGGGCCAGTTTTG                         CTCTGGAAGTATTGTATTGGCTTCTCGAGATGGAAAGATTGGTGTTTGAGA
genomic: TACC-TGCCACC-TGCCCCAAGCCATCATGATGCTCATGG-CCAGTTTTGgtaatatttt ... gtttgttcagCTCTGGAGGTATTGTATTGGCTTCTCGAGATGGAAAGATTG-TGTTTGAGA
EST: gi|32865312|gb|CF004994.1|CF004994
EST:     GTATACCTGCCACCTGCCCCAAGCCATCATGATGCTCATGGCCAGTTTTG                         CTCTGGAGGTATTGTATTGGCTTCTCGAGATGGAAAGATTGTGTTTGAGAG
genomic: GTATACCTGCCACCTGCCCCAAGCCATCATGATGCTCATGGCCAGTTTTGgtaatatttt ... gtttgttcagCTCTGGAGGTATTGTATTGGCTTCTCGAGATGGAAAGATTGTGTTTGAGAG
EST: gi|148951970|gb|EC897749.2|EC897749
EST:     GTATACCTGCCACCTGCCCCAAGCCATCATGATGCTCATGGCCAGTTTTG                         CTCTGGAGGTATTGTATTGGCTTCTCGAGATGGAAAGATTGTGTTTGAGAG
genomic: GTATACCTGCCACCTGCCCCAAGCCATCATGATGCTCATGGCCAGTTTTGgtaatatttt ... gtttgttcagCTCTGGAGGTATTGTATTGGCTTCTCGAGATGGAAAGATTGTGTTTGAGAG
EST: gi|4885978|gb|AI677098.1|AI677098
EST:     GTATACCTGCCACCTGCCCCAAGCCATCATGATGCTCATGGCCAGTTTTG                         CTCTGGAGGTATTGTATTGGCTTCTCGAGATGGAAAGATTGTGTTTGAGAG
genomic: GTATACCTGCCACCTGCCCCAAGCCATCATGATGCTCATGGCCAGTTTTGgtaatatttt ... gtttgttcagCTCTGGAGGTATTGTATTGGCTTCTCGAGATGGAAAGATTGTGTTTGAGAG
EST: gi|148951969|gb|EC897748.2|EC897748
EST:     TCATGGCCAGTTTTG                         CTCTGGAGGTATTGTATTGGCTTCTCGAGATGGAAAGATTGTGTTTGAGAG
genomic: TCATGGCCAGTTTTGgtaatatttt ... gtttgttcagCTCTGGAGGTATTGTATTGGCTTCTCGAGATGGAAAGATTGTGTTTGAGAG
EST: gi|60399344|gb|DN232158.1|DN232158
EST:     GTATACCTGCCACCTGCCCCAAGCCATCATGATGCTCATGGCCAGTTTTG                         CTCTGGAGGTATTGTATTGGCTTCTCGAGATGGAAAGATTGTGTTTGAGAG
genomic: GTATACCTGCCACCTGCCCCAAGCCATCATGATGCTCATGGCCAGTTTTGgtaatatttt ... gtttgttcagCTCTGGAGGTATTGTATTGGCTTCTCGAGATGGAAAGATTGTGTTTGAGAG
EST: gi|149037738|gb|EE155400.2|EE155400
EST:     GTATACCTGCCACCTGCCCCAAGCCATCATGATGCTCATGGCCAGTTTTG                         CTCTGGAGGTATTGTATTGGCTTCTCGAGATGGAAAGATTGTGTTTGAGAG
genomic: GTATACCTGCCACCTGCCCCAAGCCATCATGATGCTCATGGCCAGTTTTGgtaatatttt ... gtttgttcagCTCTGGAGGTATTGTATTGGCTTCTCGAGATGGAAAGATTGTGTTTGAGAG
EST: gi|8367403|gb|BE050348.1|BE050348
EST:     GTATACCTGCCACCTGCCCCAAGCCATCATGATGCTCATGGCCAGTTTTG                         CTCTGGAGGTATTGTATTGGCTTCTCGAGATGGAAAGATTGTGTTTGAGAG
genomic: GTATACCTGCCACCTGCCCCAAGCCATCATGATGCTCATGGCCAGTTTTGgtaatatttt ... gtttgttcagCTCTGGAGGTATTGTATTGGCTTCTCGAGATGGAAAGATTGTGTTTGAGAG
EST: gi|32865147|gb|CF004829.1|CF004829
EST:     GTATACCTGCCACCTGCCCCAAGCCATCATGATGCTCATGGCCAGTTTTG                         CTCTGGAGGTATTGTATTGGCTTCTCGAGATGGAAAGATTGTGTTTGAGAG
genomic: GTATACCTGCCACCTGCCCCAAGCCATCATGATGCTCATGGCCAGTTTTGgtaatatttt ... gtttgttcagCTCTGGAGGTATTGTATTGGCTTCTCGAGATGGAAAGATTGTGTTTGAGAG
EST: gi|67023589|gb|CO452338.1|CO452338
EST:     GTATACCTGCCACCTGCCCCAAGCCATCATGATGCTCATGGCCAGTTTTG                         CTCTGGAGGTATTGTATTGGCTTCTCGAGATGGAAAGATTGTGTTTGAGAG
genomic: GTATACCTGCCACCTGCCCCAAGCCATCATGATGCTCATGGCCAGTTTTGgtaatatttt ... gtttgttcagCTCTGGAGGTATTGTATTGGCTTCTCGAGATGGAAAGATTGTGTTTGAGAG
EST: gi|91869925|gb|EB400611.1|EB400611
EST:     GTATACCTGCCACCTGCCCCAAGCCATCATGATGCTCATGGCCAGTTTTG                         CTCTGGAGGTATTGTATTGGCTTCTCGAGATGGAAAGATTGTGTTTGAGAG
genomic: GTATACCTGCCACCTGCCCCAAGCCATCATGATGCTCATGGCCAGTTTTGgtaatatttt ... gtttgttcagCTCTGGAGGTATTGTATTGGCTTCTCGAGATGGAAAGATTGTGTTTGAGAG
EST: gi|6012480|gb|AW061917.1|AW061917
EST:     GTATACCTGCCACCTGCCCCAAGCCATCATGATGCTCATGGCCAGTTTTG                         CTCTGGAGGTATTGTATTGGCTTCTCGAGATGGAAAGATTGTGTTTGAGAG
genomic: GTATACCTGCCACCTGCCCCAAGCCATCATGATGCTCATGGCCAGTTTTGgtaatatttt ... gtttgttcagCTCTGGAGGTATTGTATTGGCTTCTCGAGATGGAAAGATTGTGTTTGAGAG
EST: gi|78087840|gb|DV516233.1|DV516233
EST:     GTATACCTGCCACCTGCCCCAAGCCATCATGATGCTCATGGCCAGTTTTG                         CTCTGGAGGTATTGTATTGGCTTCTCGAGATGGAAAGATTGTGTTTGAGAG
genomic: GTATACCTGCCACCTGCCCCAAGCCATCATGATGCTCATGGCCAGTTTTGgtaatatttt ... gtttgttcagCTCTGGAGGTATTGTATTGGCTTCTCGAGATGGAAAGATTGTGTTTGAGAG
EST: gi|71309732|gb|DR791145.1|DR791145
EST:     GTATACCTGCCACCTGCCCCAAGCCATCATGATGCTCATGGCCAGTTTTG                         CTCTGGAGGTATTGTATTGGCTTCTCGAGATGGAAAGATTGTGTTTGAGAG
genomic: GTATACCTGCCACCTGCCCCAAGCCATCATGATGCTCATGGCCAGTTTTGgtaatatttt ... gtttgttcagCTCTGGAGGTATTGTATTGGCTTCTCGAGATGGAAAGATTGTGTTTGAGAG
EST: gi|33101795|gb|CF061755.1|CF061755
EST:     GTATACCTGCCACCTGCCCCAAGCCATCATGATGCTCATGGCCAGTTTTG                         CTCTGGAGGTATTGTATTGGCTTCTCGAGATGGAAAGATTGTGTTTGAGAG
genomic: GTATACCTGCCACCTGCCCCAAGCCATCATGATGCTCATGGCCAGTTTTGgtaatatttt ... gtttgttcagCTCTGGAGGTATTGTATTGGCTTCTCGAGATGGAAAGATTGTGTTTGAGAG
EST: gi|5770203|gb|AI973377.1|AI973377
EST:     GTATACCTGCCACCTGCCCCAAGCCATCATGATGCTCATGGCCAGTTTTG                         CTCTGGAGGTATTGTATTGGCTTCTCGAGATGGAAAGATTGTGTTTGAGAG
genomic: GTATACCTGCCACCTGCCCCAAGCCATCATGATGCTCATGGCCAGTTTTGgtaatatttt ... gtttgttcagCTCTGGAGGTATTGTATTGGCTTCTCGAGATGGAAAGATTGTGTTTGAGAG
EST: gi|111145880|gb|EE258157.1|EE258157
EST:     GTATACCTGCCACCTGCCCCAAGCCATCATGATGCTCATGGCCAGTTTTG                         CTCTGGAGGTACTGTATTGGCTTCTCGAGATGGAAAGATTGTGTTTGAGAG
genomic: GTATACCTGCCACCTGCCCCAAGCCATCATGATGCTCATGGCCAGTTTTGgtaatatttt ... gtttgttcagCTCTGGAGGTATTGTATTGGCTTCTCGAGATGGAAAGATTGTGTTTGAGAG
EST: gi|149086619|gb|EE176162.2|EE176162
EST:     GTATACCTGCCCCCTGCCCCAAGCCATCATGATGCTCATGGCCAGTTTTG                         CTCTGGAGGTATTGTATTGGCTTCTCGAGATGGAAAGATTGTGTTTGAGAG
genomic: GTATACCTGCCACCTGCCCCAAGCCATCATGATGCTCATGGCCAGTTTTGgtaatatttt ... gtttgttcagCTCTGGAGGTATTGTATTGGCTTCTCGAGATGGAAAGATTGTGTTTGAGAG
EST: gi|149100210|gb|EE186272.2|EE186272
EST:     GTATACCTGCCACCTGCCCCAAGCCATCATGATGCTCATGGCCAGTTTTG                         CTCTGGAGGTATTGTATTGGCTTCTCGAGATGGAAAGATTGTGTTTGAGAG
genomic: GTATACCTGCCACCTGCCCCAAGCCATCATGATGCTCATGGCCAGTTTTGgtaatatttt ... gtttgttcagCTCTGGAGGTATTGTATTGGCTTCTCGAGATGGAAAGATTGTGTTTGAGAG
EST: gi|60355784|gb|DN222757.1|DN222757
EST:     GTATACCTGCCACCTGCCCCAAGCCATCATGATGCTCATGGCCAGTTTTG                         CTCTGGAGGTATTGTATTGGCTTCTCGAGATGGAAAGATTGTGTTTGAGAG
genomic: GTATACCTGCCACCTGCCCCAAGCCATCATGATGCTCATGGCCAGTTTTGgtaatatttt ... gtttgttcagCTCTGGAGGTATTGTATTGGCTTCTCGAGATGGAAAGATTGTGTTTGAGAG
EST: gi|93280878|gb|EB673142.1|EB673142
EST:     GTATACCTGCCACCTGCCCCAAGCCATCATGATGCTCATGGCCAGTTTTG                         CTCTGGAGGTATTGTATTGGCTTCTCGAGATGGAAAGATTGTGTTTGAGAG
genomic: GTATACCTGCCACCTGCCCCAAGCCATCATGATGCTCATGGCCAGTTTTGgtaatatttt ... gtttgttcagCTCTGGAGGTATTGTATTGGCTTCTCGAGATGGAAAGATTGTGTTTGAGAG
EST: gi|16927283|gb|BM080352.1|BM080352
EST:     GTATACCTGCCACCTGCCCCAAGCCATCATGATGCTCATGGCCAGTTTTG                         CTCTGGAGGTATTGTATTGGCTTCTCGAGATGGAAAGATTGTGTTTGAGAG
genomic: GTATACCTGCCACCTGCCCCAAGCCATCATGATGCTCATGGCCAGTTTTGgtaatatttt ... gtttgttcagCTCTGGAGGTATTGTATTGGCTTCTCGAGATGGAAAGATTGTGTTTGAGAG
EST: gi|60350601|gb|DN217574.1|DN217574
EST:     GTATACCTGCCACCTGCCCCAAGCCATCATGATGCTCATGGCCAGTTTTG                         CTCTGGAGGTATTGTAT-GGCTT
genomic: GTATACCTGCCACCTGCCCCAAGCCATCATGATGCTCATGGCCAGTTTTGgtaatatttt ... gtttgttcagCTCTGGAGGTATTGTATTGGCTT
EST: gi|78025737|gb|DV494124.1|DV494124
EST:     GTATACCTGCCACCTGCCCCAAGCCATCATGATGCTCATGGCCAGTTTTG                         CTCTGGAGGTATTGTATTGGCTTCTCGAGATGGAAAGATTGTGTTTGAGAG
genomic: GTATACCTGCCACCTGCCCCAAGCCATCATGATGCTCATGGCCAGTTTTGgtaatatttt ... gtttgttcagCTCTGGAGGTATTGTATTGGCTTCTCGAGATGGAAAGATTGTGTTTGAGAG
EST: gi|60356696|gb|DN223669.1|DN223669
EST:     GTATACCTGCCACCTGCCCCAAGCCATCATGATGCTCATGGCCAGTTTTG                         CTCTGGAGGTATTGTATTGGCTTCTCGAGATGGAAAGATTGTGTTTGAGAG
genomic: GTATACCTGCCACCTGCCCCAAGCCATCATGATGCTCATGGCCAGTTTTGgtaatatttt ... gtttgttcagCTCTGGAGGTATTGTATTGGCTTCTCGAGATGGAAAGATTGTGTTTGAGAG
EST: gi|5922291|gb|AW055580.1|AW055580
EST:     GTATACCTGCCACCTGCCCCAAGCCATCATGATGCTCATGGCCAGTTTTG                         CTCTGGAGGTATTGTATTGGCTTCTCGAGATGGAAAGATTGTGTTTGAGAG
genomic: GTATACCTGCCACCTGCCCCAAGCCATCATGATGCTCATGGCCAGTTTTGgtaatatttt ... gtttgttcagCTCTGGAGGTATTGTATTGGCTTCTCGAGATGGAAAGATTGTGTTTGAGAG
EST: gi|14621557|gb|BI142318.1|BI142318
EST:     GTATACCTGCCACCTGCCCCAAGCCATCATGATGCTCATGGCCAGTTTTG                         CTCTGGAGGTATTGTATTGGCTTCTCGAGATGGAAAGATTGTGTTTGAGAG
genomic: GTATACCTGCCACCTGCCCCAAGCCATCATGATGCTCATGGCCAGTTTTGgtaatatttt ... gtttgttcagCTCTGGAGGTATTGTATTGGCTTCTCGAGATGGAAAGATTGTGTTTGAGAG
EST: gi|5325086|gb|AI783277.1|AI783277
EST:     GTATACCTGCCACCTGCCCCAAGCCATCATGATGCTCATGGCCAGTTTTG                         CTCTGGAGGTATTGTATTGGCTTCTCGAGATGGAAAGATTGTGTTTGAGAG
genomic: GTATACCTGCCACCTGCCCCAAGCCATCATGATGCTCATGGCCAGTTTTGgtaatatttt ... gtttgttcagCTCTGGAGGTATTGTATTGGCTTCTCGAGATGGAAAGATTGTGTTTGAGAG
EST: gi|60349595|gb|DN216568.1|DN216568
EST:     GTATACCTGCCACCTGCCCCAAGCCATCATGATGCTCATGGCCAGTTTTG                         CTCTGGAGGTATTGTATTGGCTTCTCGAGATGGAAAGATTGTGTTTGAGAG
genomic: GTATACCTGCCACCTGCCCCAAGCCATCATGATGCTCATGGCCAGTTTTGgtaatatttt ... gtttgttcagCTCTGGAGGTATTGTATTGGCTTCTCGAGATGGAAAGATTGTGTTTGAGAG
EST: gi|60356207|gb|DN223180.1|DN223180
EST:     GTATACCTGCCACCTGCCCCAAGCCATCATGATGCTCATGGCCAGTTTTG                         CTCTGGAGGTATTGTATTGGCTTCTCGAGATGGAAAGATTGTGTTTGAGAG
genomic: GTATACCTGCCACCTGCCCCAAGCCATCATGATGCTCATGGCCAGTTTTGgtaatatttt ... gtttgttcagCTCTGGAGGTATTGTATTGGCTTCTCGAGATGGAAAGATTGTGTTTGAGAG
EST: gi|8930347|gb|BE225111.1|BE225111
EST:     GTATACCTGCCACCTGCCCCAAGCCATCATGATGCTCATGGCCAGTTTTG                         CTCTGGAGGTATTGTATTGGCTTCTCGAGATGGAAAGATTGTGTTTGAGAG
genomic: GTATACCTGCCACCTGCCCCAAGCCATCATGATGCTCATGGCCAGTTTTGgtaatatttt ... gtttgttcagCTCTGGAGGTATTGTATTGGCTTCTCGAGATGGAAAGATTGTGTTTGAGAG
EST: gi|37400679|gb|CF637696.1|CF637696
EST:     GTATACCTGCCACCTGCCCCAAGCCATCATGATGCTCATGGCCAGTTTTG                         CTCTGGAGGTATTGTATTGGCTTCTCGAGATGGAAAGATTGTGTTTGAGAG
genomic: GTATACCTGCCACCTGCCCCAAGCCATCATGATGCTCATGGCCAGTTTTGgtaatatttt ... gtttgttcagCTCTGGAGGTATTGTATTGGCTTCTCGAGATGGAAAGATTGTGTTTGAGAG
EST: gi|149100211|gb|EE186273.2|EE186273
EST:     GTATACCTGCCACCTGCCCCAAGCCATCATGATGCTCATGGCCAGTTTTG                         CTCTGGAGGTATTGTATTGGCTTCTCGAGATGGAAAGATTGTGTTTGAGAG
genomic: GTATACCTGCCACCTGCCCCAAGCCATCATGATGCTCATGGCCAGTTTTGgtaatatttt ... gtttgttcagCTCTGGAGGTATTGTATTGGCTTCTCGAGATGGAAAGATTGTGTTTGAGAG
EST: gi|32846468|gb|CD986149.1|CD986149
EST:     GTATACCTGCCACCTGCCCCAAGCCATCATGATGCTCATGGCCAGTTTTG                         CTCTGGAGGTATTGTATTGGCTTCTCGAGATGGAAAGATTGTGTTTGAGAG
genomic: GTATACCTGCCACCTGCCCCAAGCCATCATGATGCTCATGGCCAGTTTTGgtaatatttt ... gtttgttcagCTCTGGAGGTATTGTATTGGCTTCTCGAGATGGAAAGATTGTGTTTGAGAG
EST: gi|61118335|gb|DN559296.1|DN559296
EST:     GTATACCTGCCACCTGCCCCAAGCCATCATGATGCTCATGGCCAGTTTTG                         CTCTGGAGGTATTGTATTGGCTT
genomic: GTATACCTGCCACCTGCCCCAAGCCATCATGATGCTCATGGCCAGTTTTGgtaatatttt ... gtttgttcagCTCTGGAGGTATTGTATTGGCTT
EST: gi|149086621|gb|EE176163.2|EE176163
EST:     GTATACCTGCCACCTGCCCCAAGCCATCATGATGCTCATGGCCAGTTTTG                         CTCTGGAGGTATTGTATTGGCTTCTCGAGATGGAAAGATTGTGTTTGAGAG
genomic: GTATACCTGCCACCTGCCCCAAGCCATCATGATGCTCATGGCCAGTTTTGgtaatatttt ... gtttgttcagCTCTGGAGGTATTGTATTGGCTTCTCGAGATGGAAAGATTGTGTTTGAGAG
EST: gi|8930350|gb|BE225114.1|BE225114
EST:     GTATACCTGCCACCTGCCCCAAGCCATCATGATGCTCATGGCCAGTTTTG                         CTCTGGAGGTATTGTATTGGCTTCTCGAGATGGAAAGATTGTGTTTGAGAG
genomic: GTATACCTGCCACCTGCCCCAAGCCATCATGATGCTCATGGCCAGTTTTGgtaatatttt ... gtttgttcagCTCTGGAGGTATTGTATTGGCTTCTCGAGATGGAAAGATTGTGTTTGAGAG
EST: gi|32847803|gb|CD987484.1|CD987484
EST:     GTATACCTGCCACCTGCCCCAAGCCATCATGATGCTCATGGCCAGTTTTG                         CTCTGGAGGTATTGTATTGGCTTCTCGAGATGGAAAGATTGTGTTTGAGAG
genomic: GTATACCTGCCACCTGCCCCAAGCCATCATGATGCTCATGGCCAGTTTTGgtaatatttt ... gtttgttcagCTCTGGAGGTATTGTATTGGCTTCTCGAGATGGAAAGATTGTGTTTGAGAG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 345

ATGCATCAAAAGCAGATGTCCATGAACCAGAGATATTTGTTGATCATGATGTATACCTGCCACCTGCCCCAAGCCATCATGATGCTCATGGCCAGTTTTGgtaatatttt ... gtttgttcagCTCTGGAGGTATTGTATTGGCTTCTCGAGATGGAAAGATTGTGTTTGAGAGTACACTTGACGCAAGACTAGAAGTTGTTTTCCGCAAGAAATTGCCAGAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 536

ATGCATCAAAAGCAGATGTCCATGAACCAGAGATATTTGTTGATCATGATGTATACCTGCCACCTGCCCCAAGCCATCATGATGCTCATGGCCAGTTTTGgtaatatttt ... gtttgttcagCTCTGGAGGTATTGTATTGGCTTCTCGAGATGGAAAGATTGTGTTTGAGAGTACACTTGACGCAAGACTAGAAGTTGTTTTCCGCAAGAAATTGCCAGAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 512

ATGCATCAAAAGCAGATGTCCATGAACCAGAGATATTTGTTGATCATGATGTATACCTGCCACCTGCCCCAAGCCATCATGATGCTCATGGCCAGTTTTGgtaatatttt ... gtttgttcagCTCTGGAGGTATTGTATTGGCTTCTCGAGATGGAAAGATTGTGTTTGAGAGTACACTTGACGCAAGACTAGAAGTTGTTTTCCGCAAGAAATTGCCAGAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 359

ATGCATCAAAAGCAGATGTCCATGAACCAGAGATATTTGTTGATCATGATGTATACCTGCCACCTGCCCCAAGCCATCATGATGCTCATGGCCAGTTTTGgtaatatttt ... gtttgttcagCTCTGGAGGTATTGTATTGGCTTCTCGAGATGGAAAGATTGTGTTTGAGAGTACACTTGACGCAAGACTAGAAGTTGTTTTCCGCAAGAAATTGCCAGAG