Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGGGAGAATAGCTCATGGGGCAAGAAGCTGATTGTTCAGAAGAGGAGAGCATCACTCAATGACTTTGACAGGTTCAAGGTCATGTTGGCGAAGATCAAGgtttggcatattctagagtaattaatttatccattgttctgcttatttcctaatatactggtatggttgtcatttgaacag

Basic information

species Zea mays
transcript GRMZM2G028883_T01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G028883_T01 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os04g43540.1 (Oryza sativa), 5'ss of exon 4
GTGGGAGAATAGCTCATGGGGCAAGAAGCTGATTGTTCAGAAGAGGAGAGCATCACTCAATGACTTTGACAGGTTCAAGGTCATGTTGGCGAAGATCAAGgt-----ttggc---atattctagagtaattaatttatccattgttctgcttatttcctaatatactggtatggttgtcatttgaacag
||||||||| ||||||||||| ||||| |||||||| ||||||||||||||||| ||||| |||||||||||||||||||| ||||||||||||||||||||     |  ||   | | ||| || || |   |||||  |  ||| || | ||   |   | || |  | || ||| ||| |||||||
GTGGGAGAACAGCTCATGGGGTAAGAAACTGATTGTCCAGAAGAGGAGAGCATCCCTCAACGACTTTGACAGGTTCAAGGTTATGTTGGCGAAGATCAAGgtgatactccgctctacactctcgaatagtacctttattgaaggttttgttcatacaccc-tctaatactctgattggcatatgaacag

upper sequence: GRMZM2G028883_T01 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA10G32580.1 (Glycine max), 5'ss of exon 4
GTGGGAGAATAGCTCATGGGGCAAGAAGCTGATTGTTCAGAAGAGGAGAGCATCACTCAATGACTTTGACAGGTTCAAGGTCATGTTGGCGAAGATCAAGgtttggcatattc---tagagtaatta----atttatccatt---gttctgcttatttcctaatatactggtatg-gttgtcatttgaacag------------------------------------------------------------
||||||||| || |||||||| |  || || ||||||   ||||| || ||||| |||||||| ||||| ||||||||| | ||||| || ||||||||||| |    | ||    | |  | |||       ||||  |||   ||  || |||         | ||||  ||| ||| ||   || || |                                                            
GTGGGAGAAGAGTTCATGGGGTAGAAAACTCATTGTTAGAAAGAGAAGGGCATCCCTCAATGATTTTGATAGGTTCAAGATAATGTTAGCCAAGATCAAGgtatattctttttcttttgtttgattgtagtgcttattaattaatgtcatggttacacatagtgaaactgaaatgtgttttccactgtactgttatgtcaatgtgggtcttggttgtattcattgtaatatttggatttttaatttgtgcag

upper sequence: GRMZM2G028883_T01 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA02G00680.1 (Glycine max), 5'ss of exon 4
GTGGGAGAATAGCTCATGGGGCAAGAAGCTGATTGTTCAGAAGAGGAGAGCATCACTCAATGACTTTGACAGGTTCAAGGTCATGTTGGCGAAGATCAAGgtttggcatattctagagtaattaatttatccattgtt----ctgcttatttcctaatatactggtatg-----gttgtcatttgaacag--------------------------------------------------------------------------------
 |||||||| || || |||||||  || |||||||| ||||||||||| ||||| || ||||||||||| ||||||||| | |||||||| |||||||||||| |    ||| || |    |  | || | | || |      |  ||||||  |  | |||| || |      |||  | ||   ||||                                                                                
ATGGGAGAAGAGTTCTTGGGGCAGAAAACTGATTGTGCAGAAGAGGAGGGCATCCCTTAATGACTTTGATAGGTTCAAGATAATGTTGGCCAAGATCAAGgttggtttcattgtacatgtttatactttttctttttcaaaattttttatttagttgtgtactagtgttagtgtgttacccttctcacagaaaggggtctgttcttttttgttatactatcattttaatttcagaagaagtctaatatacaaaatgtttaatttgtgcag

upper sequence: GRMZM2G028883_T01 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA20G35000.1 (Glycine max), 5'ss of exon 4
GTGGGAGAATAGCTCATGGGGCAAGAAGCTGATTGTTCAGAAGAGGAGAGCATCACTCAATGACTTTGACAGGTTCAAGGTCATGTTGGCGAAGATCAAGgtttggcatattctagagtaattaatt-tatccattgtt--ctgcttatttcctaatatactggtatggttgtcatttgaacag-------------------------------------------------------------------------
||||||||| || |||||||||| ||| || |||||    ||||| || ||||| |||||||| ||||| ||||||||| | |||||||| ||||||||||| |   || ||||    |  || ||| ||    || ||   |  | |  |  |   | || |||     ||  |||||                                                                              
GTGGGAGAAGAGTTCATGGGGCAGGAAACTCATTGTCAGAAAGAGAAGGGCATCCCTCAATGATTTTGATAGGTTCAAGATAATGTTGGCCAAGATCAAGgtata--attttctttcttcgttgattgtagttcttattagttaatgaccttgttgcagac-ggtgaaactgaaatttgtgtttcactgtattgttatgtcaatgtgtgtcttggttttattcaattgtaatttttggatttttttaatttgtgcag

upper sequence: GRMZM2G028883_T01 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA03G06380.1 (Glycine max), 5'ss of exon 4
GTGGGAGAATAGCTCATGGGGCAAGAAGCTGATTGTTCAGAAGAGGAGAGCATCACTCAATGACTTTGACAGGTTCAAGGTCATGTTGGCGAAGATCAAGgtttgg--------catattctagagtaatta--atttatccattgttctgct-tatttcctaatatactggtatggttgtcatttgaacag---------------------------------------------------------------------------------------------
       || || |||||||||| ||| || |||||    ||||  || ||||| |||||||| ||||| ||||||||| | |||||||| ||||||||||| |          | ||||  |  ||| ||   |||  |  ||     || |  |  | || | |      | ||  | ||| |  |                                                                                                 
-------AAGAGTTCATGGGGCAGGAAACTCATTGTCAGAAAGATAAGGGCATCCCTCAATGATTTTGATAGGTTCAAGATAATGTTGGCCAAGATCAAGgtataattttctctcttatttgattgtagttcttattggttaatgaccttgttgcacatgctgaaactgaaatgtgtgtttcactgtattgttatgtcaatgtgtgtcttggttttattcaattgtaatttttggatttttttaatttgtgcagagggcagaggttttaatttaagcatttgcag

upper sequence: GRMZM2G028883_T01 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA14G19890.1 (Glycine max), 5'ss of exon 5
GTGGGAGAATAGCTCATGGGGCAAGAAGCTGATTGTTCAGAAGAGGAGAGCATCACTCAATGACTTTGACAGGTTCAAGGTCATGTTGGCGAAGATCAAGgtttggcatattctagagtaattaatttatccattgttctgcttatttcctaatatactggtatggttgtcatttgaacag
                                        ||||| || ||||| |||||||| ||||| ||||||||| | |||||| | ||||||||||| |    |  |||        | ||||     | |||||  ||| ||  | |  |     | | ||| | ||| |   | 
---------------------------------------AAAGAGAAGGGCATCCCTCAATGATTTTGATAGgttcaagataatgttgaccaagatcaaggtataattttctct-------cttatttgattgtagttcttattagttaatgacct-tgattgtagttcttattagttaa-

upper sequence: GRMZM2G028883_T01 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA20G35000.2 (Glycine max), 5'ss of exon 4
GTGGGAGAATAGCTCATGGGGCAAGAAGCTGATTGTTCAGAAGAGGAGAGCATCACTCAATGACTTTGACAGGTTCAAGGTCATGTTGGCGAAGATCAAGgtttggcatattctagagtaattaatt-tatccattgtt--ctgcttatttcctaatatactggtatggttgtcatttgaacag----------------------------------------------------------------------------
||||||||| || |||||||||| ||| || |||||    ||||| || ||||| |||||||| ||||| ||||||||| | |||||||| ||||||||||| |   || ||||    |  || ||| ||    || ||   |  | |  |  |   | || |||     ||  |||||                                                                                 
GTGGGAGAAGAGTTCATGGGGCAGGAAACTCATTGTCAGAAAGAGAAGGGCATCCCTCAATGATTTTGATAGGTTCAAGATAATGTTGGCCAAGATCAAGgtata--attttctttcttcgttgattgtagttcttattagttaatgaccttgttgcagac-ggtgaaactgaaatttgtgtttcactgtattgttatgtcaatgtgtgtcttggttttattcaattgtaatttttggatttttttaatttgtgcagaag

upper sequence: GRMZM2G028883_T01 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA10G00680.1 (Glycine max), 5'ss of exon 4
GTGGGAGAATAGCTCATGGGGCAAGAAGCTGATTGTTCAGAAGAGGAGAGCATCACTCAATGACTTTGACAGGTTCAAGGTCATGTTGGCGAAGATCAAGgtttggcatattctaga-gtaattaatttatccattgttctgctta---tttcctaatatactggtatg-----gttgtcatttgaacag-------------------------------------------------------------------------------------
 |||||||| || || |||||||  || |||||||| ||||||||||| ||||| |||||||||||||| ||||||||| | |||||||| |||||||||||| |    |||||| | ||   || ||| | | ||  | |  |||   |||  | || || | || |      |||  | ||   ||||                                                                                     
ATGGGAGAAGAGTTCTTGGGGCAGAAAACTGATTGTGCAGAAGAGGAGGGCATCCCTCAATGACTTTGATAGGTTCAAGATAATGTTGGCAAAGATCAAGgttggtttcattctacatgtttatacttttttcgtttctttttttaaattttgttgatttagttgtgtactagtgttacccttcacacagaaaggggtctgttctatttgttgttatcctataattttaacttcggagacgctgaatctaatatactagtgtttaatttgtgcag

upper sequence: GRMZM2G028883_T01 (Zea mays), 5'ss of exon 4
lower sequence: AT2G20450.1 (Arabidopsis thaliana), 5'ss of exon 4
GTGGGAGAATAGCTCATGGGGCAAGAAGCTGATTGTTCAGAAGAGGAGAGCATCACTCAATGACTTTGACAGGTTCAAGGTCATGTTGGCGAAGATCAAGgtttggcatattctagagta---attaatttatccattgttctgcttatttccta-atatactggtatggttgtcatttgaacag-----------------
||||||||| || |||||||| | ||| || ||||| |||||||| |||||  | |||||||| ||||||||||||||| |||||||||| || ||||||||| ||  || |     |||   |  ||| |     | ||      || ||  |  | || | | |   ||| ||| |    ||                  
GTGGGAGAAGAGTTCATGGGGTAGGAAACTTATTGTGCAGAAGAGAAGAGCTGCCCTCAATGATTTTGACAGGTTCAAGATCATGTTGGCCAAAATCAAGgtt-ggtttacttctttgtatccaccaatgttgttttagtcaactctactttgtgcaaatgcagatg-agttttcactgcttcatttgccctcactttcggt

upper sequence: GRMZM2G028883_T01 (Zea mays), 5'ss of exon 4
lower sequence: AT4G27090.1 (Arabidopsis thaliana), 5'ss of exon 4
GTGGGAGAATAGCTCATGGGGCAAGAAGCTGATTGTTCAGAAGAGGAGAGCATCACTCAATGACTTTGACAGGTTCAAGGTCATGTTGGCGAAGATCAAGgtt----tggcatattctagagtaattaatttatccattgttctgcttatttcctaatatactggtatggttgtcatttgaacag----------
||||||||| ||||||||||| | |||||| || || |||||  | || ||    || || |||||||| ||||||||| |||||||||| |||||||||||     ||  | ||| |    |  || |  | ||  | ||  || | |||         ||||  ||| |  |   ||     |          
GTGGGAGAAAAGCTCATGGGGTAGGAAGCTTATCGTGCAGAAACGTAGGGCTAACCTTAACGACTTTGATAGGTTCAAGATCATGTTGGCCAAGATCAAGgtcagtgtgttaaattgttagatgtttgaaat-tctgtggtagtgttcattcatgtcagaactgaaatgttaatgggtttttttgctgtttgcag

upper sequence: GRMZM2G028883_T01 (Zea mays), 5'ss of exon 4
lower sequence: Vv11s0118g00670.t01 (Vitis vinifera), 5'ss of exon 5
GTGGGAGAATAGCTCATGGGGCAAGAAGCTGATTGTTCAGAAGAGGAGAGCATCACTCAATGACTTTGACAGGTTCAAGGTCATGTTGGCGAAGATCAAGgtttggcat------attctagagtaat------taatttatcc-attgttctgcttatttcctaatatactggtat--ggttgtcatttgaacag-------------------------------------
|||||||||||| || |||||||  ||| ||||||| ||||||||||| || || || ||||||||||| ||||||||| |||||||||| ||||| ||||||||  ||      || |  | ||  |      |||||| ||| ||   ||| |||| ||  |  |  | |   |   |     || | |||  |                                     
GTGGGAGAATAGTTCCTGGGGCAGAAAGTTGATTGTCCAGAAGAGGAGGGCCTCTCTTAATGACTTTGATAGGTTCAAGATCATGTTGGCAAAGATTAAGgtttgttatgatgcaatccctgtgtgttgctgtttaatttttcccatctctctacttaattttttgtggattcagactagaaccccactggaaatggcccaatctaatatatttgtttaatatgcatttgcag

upper sequence: GRMZM2G028883_T01 (Zea mays), 5'ss of exon 4
lower sequence: Vv05s0049g01310.t01 (Vitis vinifera), 5'ss of exon 5
GTGGGAGAATAGCTCATGGGGCAAGAAGCTGATTGTTCAGAAGAGGAGAGCATCACTCAATGACTTTGACAGGTTCAAGGTCATGTTGGCGAAGATCAAGgtttggcat-attctagagtaattaatttatccattgttc-----tgcttatttcctaatatactggtatggttgtcatttg-aacag-----------------------------------------------------------------------
||||||||||||||| |||||||  ||||||||||| ||||||||||||||||| || ||||||||||| ||||||||| |||||||||| ||||||||||||||  |  || | |     ||   |   |  | || |      |  ||  | | | |||   |  |   |     || || ||||                                                                        
GTGGGAGAATAGCTCCTGGGGCAGAAAGCTGATTGTGCAGAAGAGGAGAGCATCTCTTAATGACTTTGATAGGTTCAAGATCATGTTGGCAAAGATCAAGgtttgttaagatgccatccctatatgtcgctgtactgcttgcatttaatttctccttcataccttttttcagccagaatatgcaacatgccttttaggtgtcagaccataacccatagaactgctcaagtctaatacattcattaatatgcatttgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211428637|gb|FL384475.1|FL384475
EST:     CATCACTCAATGACTTTGACAGGTTCAAGGTCATGTTGGCGAAGATCAAG                         AGGGGCGGTGCCATTAGGCAAGAGCTTGCTAAGCTTAAAAAGGTGGCTGCT
genomic: CATCACTCAATGACTTTGACAGGTTCAAGGTCATGTTGGCGAAGATCAAGgtttggcata ... atttgaacagAGGGGCGGTGCCATTAGGCAAGAGCTTGCTAAGCTTAAAAAGGTGGCTGCT
EST: gi|211050747|gb|FL374478.1|FL374478
EST:     CATCACTCAATGACTTTGACAGGTTCAAGGTCATGTTGGCGAAGATCAAG                         AGGGGCGGTGCCATTAGGCAAGAGCTTGCTAAGCTTAAAAAGGTGGCTGCT
genomic: CATCACTCAATGACTTTGACAGGTTCAAGGTCATGTTGGCGAAGATCAAGgtttggcata ... atttgaacagAGGGGCGGTGCCATTAGGCAAGAGCTTGCTAAGCTTAAAAAGGTGGCTGCT
EST: gi|18180815|gb|BM382025.1|BM382025
EST:     CATCACTCAATGACTTTGACAGGTTCAAGGTCATGTTGGCGAAGATCAAG                         AGGGGCGGTGCCATTAGGCAAGAGCTTGCTAAGCTTAAAAAGGTGGCTGCT
genomic: CATCACTCAATGACTTTGACAGGTTCAAGGTCATGTTGGCGAAGATCAAGgtttggcata ... atttgaacagAGGGGCGGTGCCATTAGGCAAGAGCTTGCTAAGCTTAAAAAGGTGGCTGCT
EST: gi|5607945|gb|AI901612.1|AI901612
EST:     CATCACTCAATGACTTTGACAGGTTCAAGGTCATGTTGGCGAAGATCAAG                         AGGGGTGGTGCCATCAGGCAAGAGCTTGCTAAGCTTAAAAAGGTGGCTGCT
genomic: CATCACTCAATGACTTTGACAGGTTCAAGGTCATGTTGGCGAAGATCAAGgtttggcata ... atttgaacagAGGGGCGGTGCCATTAGGCAAGAGCTTGCTAAGCTTAAAAAGGTGGCTGCT
EST: gi|32931539|gb|CF036351.1|CF036351
EST:     CATCACTCAATGACTTTGACAGGTTCAAGGTCATGTTGGCGAAGATCAAG                         AGGGGTGGTGCCATCAGGCAAGAGCTTGCTAAGCTTAAAAAGGTGGCTGCT
genomic: CATCACTCAATGACTTTGACAGGTTCAAGGTCATGTTGGCGAAGATCAAGgtttggcata ... atttgaacagAGGGGCGGTGCCATTAGGCAAGAGCTTGCTAAGCTTAAAAAGGTGGCTGCT
EST: gi|211165947|gb|FL375003.1|FL375003
EST:     CATCACTCAATGACTTTGACAGGTTCAAGGTCATGTTGGCGAAGATCAAG                         AGGGGCGGTGCCATTAGGCAAGAGCTTGCTAA
genomic: CATCACTCAATGACTTTGACAGGTTCAAGGTCATGTTGGCGAAGATCAAGgtttggcata ... atttgaacagAGGGGCGGTGCCATTAGGCAAGAGCTTGCTAA
EST: gi|29946618|gb|CB816240.1|CB816240
EST:     CATCACTCAATGACTTTGACAGGTTCAAGGTCATGTTGGCGAAGATCAAG                         AGGGGCGGTGCCATTAGGCAAGAGCTTGCTAAGCTTAAAAAGGTGGCTGCT
genomic: CATCACTCAATGACTTTGACAGGTTCAAGGTCATGTTGGCGAAGATCAAGgtttggcata ... atttgaacagAGGGGCGGTGCCATTAGGCAAGAGCTTGCTAAGCTTAAAAAGGTGGCTGCT
EST: gi|211494460|gb|FL428226.1|FL428226
EST:     CATCACTCAATGACTTTGACAGGTTCAAGGTCATGTTGGCGAAGATCAAG                         AGGGGCGGTGCCATTAGGCAAGAGCTTGCTAAGCTTAAAAAGGTGGCTGCT
genomic: CATCACTCAATGACTTTGACAGGTTCAAGGTCATGTTGGCGAAGATCAAGgtttggcata ... atttgaacagAGGGGCGGTGCCATTAGGCAAGAGCTTGCTAAGCTTAAAAAGGTGGCTGCT
EST: gi|88748517|gb|DY532658.1|DY532658
EST:     CATCACTCAATGACTTTGACAGGTTCAAGGTCATGTTGGCGAAGATCAAG                         AGGGGCGGTGCCATTAGGCAAGAGCTTGCTAAGCTTAAAAAGGTGGCTGCT
genomic: CATCACTCAATGACTTTGACAGGTTCAAGGTCATGTTGGCGAAGATCAAGgtttggcata ... atttgaacagAGGGGCGGTGCCATTAGGCAAGAGCTTGCTAAGCTTAAAAAGGTGGCTGCT
EST: gi|211360514|gb|FL385267.1|FL385267
EST:     CATCACTCAATGACTTTGACAGGTTCAAGGTCATGTTGGCGAAGATCAAG                         AGGGGCGGTGC
genomic: CATCACTCAATGACTTTGACAGGTTCAAGGTCATGTTGGCGAAGATCAAGgtttggcata ... atttgaacagAGGGGCGGTGC
EST: gi|211143214|gb|FL408633.1|FL408633
EST:     CATCACTCAATGACTTTGACAGGTTCAAGGTCATGTTGGCGAAGATCAAG                         AGGGGCGGTGC-ATTAGGCAAAGAGCTTGCTAAGCTTAA
genomic: CATCACTCAATGACTTTGACAGGTTCAAGGTCATGTTGGCGAAGATCAAGgtttggcata ... atttgaacagAGGGGCGGTGCCATTAGGCAA-GAGCTTGCTAAGCTTAA
EST: gi|4753346|gb|AI657251.1|AI657251
EST:     CATCACTCAATGACTTTGACAGGTTCAAGGTCATGTTGGCGAAGATCAAG                         AGGGGCGGTGCCATTAGGCAAGAGCTTGCTAAGCTTAAAAAGGTGGCTGCT
genomic: CATCACTCAATGACTTTGACAGGTTCAAGGTCATGTTGGCGAAGATCAAGgtttggcata ... atttgaacagAGGGGCGGTGCCATTAGGCAAGAGCTTGCTAAGCTTAAAAAGGTGGCTGCT
EST: gi|211026841|gb|FL370336.1|FL370336
EST:     CATCACTCAATGACTTTGACAGGTTCAAGGTCATGTTGGCGAAGATCAAN                         AGGGGCGGTGCCATTTAGGCAAGAGCTTGCTAAGCTTAAAAAAGTGGCTGC
genomic: CATCACTCAATGACTTTGACAGGTTCAAGGTCATGTTGGCGAAGATCAAGgtttggcata ... atttgaacagAGGGGCGGTGCCATT-AGGCAAGAGCTTGCTAAGCTTAAAAAGGTGGCTGC
EST: gi|211150585|gb|FL418274.1|FL418274
EST:     CATCACTCAATSACTTTGACAGGTTCAAGGTCATGTTGGCGAAGATCAAG                         AGGGGCGGTGCCATTAGGCAAGATCTTGCTAAGCTTAAAAAGGTGGCTGCT
genomic: CATCACTCAATGACTTTGACAGGTTCAAGGTCATGTTGGCGAAGATCAAGgtttggcata ... atttgaacagAGGGGCGGTGCCATTAGGCAAGAGCTTGCTAAGCTTAAAAAGGTGGCTGCT
EST: gi|211493633|gb|FL397220.1|FL397220
EST:     CATCACTCAATGACTTTGACAGGTTCAAGGTCATGTTGGCGAAGATCAAG                         AGGGGCGGTGCCATTAGGCAAGAGCTTGCTAAAGCTTAAAAAGGTGGCTGC
genomic: CATCACTCAATGACTTTGACAGGTTCAAGGTCATGTTGGCGAAGATCAAGgtttggcata ... atttgaacagAGGGGCGGTGCCATTAGGCAAGAGCTTGCTAA-GCTTAAAAAGGTGGCTGC
EST: gi|211209573|gb|FL394638.1|FL394638
EST:     CATCACTCAATGACTTTGACAGGTTCAAGGTCATGTTGGCGAAGATCAAG                         ARGGGCGGTGCCATTAGGCAAGAGCTTGCTAAGCTTAAAAAGGTGGCTGCT
genomic: CATCACTCAATGACTTTGACAGGTTCAAGGTCATGTTGGCGAAGATCAAGgtttggcata ... atttgaacagAGGGGCGGTGCCATTAGGCAAGAGCTTGCTAAGCTTAAAAAGGTGGCTGCT
EST: gi|211323108|gb|FL368450.1|FL368450
EST:     CATCACTCAATGACTTTGACAGGTTCAAGGTCATGTTGGCGAAGATCAAG                         AGGGGCGGTGCCATTAGGCAAGAGCTTGCTAAGCTTAAAAAGGTGGCTGCT
genomic: CATCACTCAATGACTTTGACAGGTTCAAGGTCATGTTGGCGAAGATCAAGgtttggcata ... atttgaacagAGGGGCGGTGCCATTAGGCAAGAGCTTGCTAAGCTTAAAAAGGTGGCTGCT
EST: gi|211479851|gb|FL422852.1|FL422852
EST:     CATCACTCAATGACTTTGACAGGTTCAAGGTCATGTTGGCGAAGATCAAG                         AGGGGCGGTGCCATTAGGCAAGAGCTTGCTAAGCTTAAAAAGGTGGCTGCT
genomic: CATCACTCAATGACTTTGACAGGTTCAAGGTCATGTTGGCGAAGATCAAGgtttggcata ... atttgaacagAGGGGCGGTGCCATTAGGCAAGAGCTTGCTAAGCTTAAAAAGGTGGCTGCT
EST: gi|211131969|gb|FL389091.1|FL389091
EST:     CATCACTCAATGACTTTGACAGGTTCAAGGTCATGTTGGCGAAGATCAAG                         AGGGGCGGTGC-ATTAGGCAAGAGCTTGCTAAGCTTAAAAAGG
genomic: CATCACTCAATGACTTTGACAGGTTCAAGGTCATGTTGGCGAAGATCAAGgtttggcata ... atttgaacagAGGGGCGGTGCCATTAGGCAAGAGCTTGCTAAGCTTAAAAAGG
EST: gi|37386068|gb|CF630207.1|CF630207
EST:     CATCACTCAATGACTTTGACAGGTTCAAGGTCATGTTGGCGAAGATCAAG                         AGGGGTGGTGCCATCAGGCAAGAGCTTGCTAAGCTTAAAAAGGTGGCTGCT
genomic: CATCACTCAATGACTTTGACAGGTTCAAGGTCATGTTGGCGAAGATCAAGgtttggcata ... atttgaacagAGGGGCGGTGCCATTAGGCAAGAGCTTGCTAAGCTTAAAAAGGTGGCTGCT
EST: gi|87152982|gb|DY397771.1|DY397771
EST:     CATCACTCAATGACTTTGACAGGTTCAAGGTCATGTTGGCGAAGATCAAG                         AGGGGCGGTGCCATTAGGCAAGAGCTTGCTAAGCTTAAAAAGGTGGCTGCT
genomic: CATCACTCAATGACTTTGACAGGTTCAAGGTCATGTTGGCGAAGATCAAGgtttggcata ... atttgaacagAGGGGCGGTGCCATTAGGCAAGAGCTTGCTAAGCTTAAAAAGGTGGCTGCT
EST: gi|9952872|gb|BE639455.1|BE639455
EST:     CATCACTCAATGACTTTGACAGGTTCAAGGTCATGTTGGCGAAGATCAAG                         AGGGGTGGTGCCATCAGGCAAGAGCTTGCTAAGCTTAAAAAGGTGGCTGCT
genomic: CATCACTCAATGACTTTGACAGGTTCAAGGTCATGTTGGCGAAGATCAAGgtttggcata ... atttgaacagAGGGGCGGTGCCATTAGGCAAGAGCTTGCTAAGCTTAAAAAGGTGGCTGCT
EST: gi|4630657|gb|AI621531.1|AI621531
EST:     AGGTTCAAGGTCATGTTGGCGAAGATCAAG                         AGGGGCGGTGCCATTAGGCAAGAGCTTGCTAAGCTTAAAAAGGTGGCTGCT
genomic: AGGTTCAAGGTCATGTTGGCGAAGATCAAGgtttggcata ... atttgaacagAGGGGCGGTGCCATTAGGCAAGAGCTTGCTAAGCTTAAAAAGGTGGCTGCT
EST: gi|211397824|gb|FL389336.1|FL389336
EST:     CATCACTCAATGACTTTGACAGGTTCAAGGTCATGTTGGCGAAGATCAAG                         ANGGGCGGTGCCATTAGGCAAGAGCTT
genomic: CATCACTCAATGACTTTGACAGGTTCAAGGTCATGTTGGCGAAGATCAAGgtttggcata ... atttgaacagAGGGGCGGTGCCATTAGGCAAGAGCTT
EST: gi|211249692|gb|FL397010.1|FL397010
EST:     CATCACTCAATGACTTTGACAGGTTCAAGGTCATGTTGGCGAAGATCAAG                         AGGGGCGGTGCCATTAGGCAAGAGCTTGCTAAGCTTAAAAAGGTGGCTGCT
genomic: CATCACTCAATGACTTTGACAGGTTCAAGGTCATGTTGGCGAAGATCAAGgtttggcata ... atttgaacagAGGGGCGGTGCCATTAGGCAAGAGCTTGCTAAGCTTAAAAAGGTGGCTGCT
EST: gi|60345598|gb|DN212571.1|DN212571
EST:     CATCACTCAATGACTTTGACAGGTTCAAGGTCATGTTGGCGAAGATCAAG                         AGGGGCGGTGCCATTAGGCAAGAGCTTGCTAAGCTTAAAAAGGTGGCTGCT
genomic: CATCACTCAATGACTTTGACAGGTTCAAGGTCATGTTGGCGAAGATCAAGgtttggcata ... atttgaacagAGGGGCGGTGCCATTAGGCAAGAGCTTGCTAAGCTTAAAAAGGTGGCTGCT
EST: gi|211499585|gb|FL402049.1|FL402049
EST:     CATCACTCAATGACTTTGACAGGTTCAAGGTCATGTTSGCGA-GATCAAG                         AGGGGCGGTGC-ATTTAG-CAAGAGCTTGCTAAGCTTAAAAAGGT
genomic: CATCACTCAATGACTTTGACAGGTTCAAGGTCATGTTGGCGAAGATCAAGgtttggcata ... atttgaacagAGGGGCGGTGCCATT-AGGCAAGAGCTTGCTAAGCTTAAAAAGGT
EST: gi|9952871|gb|BE639454.1|BE639454
EST:     CATCACTCAATGACTTTGACAGGTTCAAGGTCATGTTGGCGAAGATCAAG                         AGGGGTGGTGCCATCAGGCAAGAGCTTGCTAAGCTTAAAAAGGTGGCTGCT
genomic: CATCACTCAATGACTTTGACAGGTTCAAGGTCATGTTGGCGAAGATCAAGgtttggcata ... atttgaacagAGGGGCGGTGCCATTAGGCAAGAGCTTGCTAAGCTTAAAAAGGTGGCTGCT
EST: gi|211292336|gb|FL387401.1|FL387401
EST:     CATCACTCAATGACTTTGACAGGTTCAAGGTCATGTTGGCGAAGATCAAG                         AGGGGCGGTGCCATTAGGCAAGAGCTTGCTAAGCTTAAAAAGGTGGCTGCT
genomic: CATCACTCAATGACTTTGACAGGTTCAAGGTCATGTTGGCGAAGATCAAGgtttggcata ... atttgaacagAGGGGCGGTGCCATTAGGCAAGAGCTTGCTAAGCTTAAAAAGGTGGCTGCT
EST: gi|71304846|gb|DR788536.1|DR788536
EST:     CATCACTCAATGACTTTGACAGGTTCAAGGTCATGTTGGCGAAGATCAAG                         AGGGGCGGTGCCATTAGGCAAGAGCTTGCTAAGCTTAAAAAGGTGGCTGCT
genomic: CATCACTCAATGACTTTGACAGGTTCAAGGTCATGTTGGCGAAGATCAAGgtttggcata ... atttgaacagAGGGGCGGTGCCATTAGGCAAGAGCTTGCTAAGCTTAAAAAGGTGGCTGCT
EST: gi|12972467|gb|BG267996.1|BG267996
EST:     CATCACTCAATGACTTTGACAGGTTCAAGGTCATGTTGGCGAAGATCAAG                         AGGGGCGGTGCCATTAGGCAAGAGCTTGCTAAGCTTAAAAAGGTGGCTGCT
genomic: CATCACTCAATGACTTTGACAGGTTCAAGGTCATGTTGGCGAAGATCAAGgtttggcata ... atttgaacagAGGGGCGGTGCCATTAGGCAAGAGCTTGCTAAGCTTAAAAAGGTGGCTGCT
EST: gi|211126324|gb|FL371825.1|FL371825
EST:     CATCACTCAATGACTTTGACAGGTTCAAGGTCATGTTGGCGAARATCAAG                         AGGGGCGGTGCCATTAGGCAAGAGCTTGCTAAGCTTAAAAAGGTGGCTGCT
genomic: CATCACTCAATGACTTTGACAGGTTCAAGGTCATGTTGGCGAAGATCAAGgtttggcata ... atttgaacagAGGGGCGGTGCCATTAGGCAAGAGCTTGCTAAGCTTAAAAAGGTGGCTGCT
EST: gi|29945582|gb|CB815713.1|CB815713
EST:     CATCACTCAATGACTTTGACAGGTTCAAGGTCATGTTGGCGAAGATCAAG                         AGGGGCGGTGCCATTAGGCAAGAGCTTGCTAAGCTTAAAAAGGTGGCTGCT
genomic: CATCACTCAATGACTTTGACAGGTTCAAGGTCATGTTGGCGAAGATCAAGgtttggcata ... atttgaacagAGGGGCGGTGCCATTAGGCAAGAGCTTGCTAAGCTTAAAAAGGTGGCTGCT
EST: gi|211299168|gb|FL411036.1|FL411036
EST:     CATCACTCAATGACTTTGACAGGTTCAAGGTCATGTTGGCGAAGATCAAG                         AGGGGCGGTGCCATTAGGC
genomic: CATCACTCAATGACTTTGACAGGTTCAAGGTCATGTTGGCGAAGATCAAGgtttggcata ... atttgaacagAGGGGCGGTGCCATTAGGC
EST: gi|14243478|gb|BG841143.2|BG841143
EST:     CATCACTCAATGACTTTGACAGGTTCAAGGTCATGTTGGCGAAAATCAAG                         AGGGGCGGGGCCATTAGGCAAGAGCTTGCTAAGCTTAAAAAGGTGGCTGCT
genomic: CATCACTCAATGACTTTGACAGGTTCAAGGTCATGTTGGCGAAGATCAAGgtttggcata ... atttgaacagAGGGGCGGTGCCATTAGGCAAGAGCTTGCTAAGCTTAAAAAGGTGGCTGCT
EST: gi|211314987|gb|FL374729.1|FL374729
EST:     CATCACTCAATGACTTTGACAGGTTCAAGGTCATGTTGGCGAAGATCAAG                         AGGGGCGGTGCCATTAGGCAAGAGCTTGCTAAGCTTAAAAAGGTGGCTGCT
genomic: CATCACTCAATGACTTTGACAGGTTCAAGGTCATGTTGGCGAAGATCAAGgtttggcata ... atttgaacagAGGGGCGGTGCCATTAGGCAAGAGCTTGCTAAGCTTAAAAAGGTGGCTGCT
EST: gi|211199119|gb|FL383383.1|FL383383
EST:     CATCACTCAATGACTTTGACAGGTTCAAGGTCATGTTGGCGAAGATCAAG                         AGGGGCGGTGCCATTAGGCAAGAGCTTGCTAAGCTTAAAAAG
genomic: CATCACTCAATGACTTTGACAGGTTCAAGGTCATGTTGGCGAAGATCAAGgtttggcata ... atttgaacagAGGGGCGGTGCCATTAGGCAAGAGCTTGCTAAGCTTAAAAAG
EST: gi|32911085|gb|CF015897.1|CF015897
EST:     CATCACTCAATGACTTTGACAGGTTCAAGGTCATGTTGGCGAAGATCAAG                         AGGGGTGGTGCCATCAGGCAAGAGCTTGCTAAGCTTAAAAAGGTGGCTGCT
genomic: CATCACTCAATGACTTTGACAGGTTCAAGGTCATGTTGGCGAAGATCAAGgtttggcata ... atttgaacagAGGGGCGGTGCCATTAGGCAAGAGCTTGCTAAGCTTAAAAAGGTGGCTGCT
EST: gi|37382309|gb|CF628096.1|CF628096
EST:     GGTTCAAGGTCATGTTGGCGAAGATCAAG                         AGGGGTGGTGCCATCAGGCAAGAGCTTGCTAAGCTTAAAAAGGTGGCTGCT
genomic: GGTTCAAGGTCATGTTGGCGAAGATCAAGgtttggcata ... atttgaacagAGGGGCGGTGCCATTAGGCAAGAGCTTGCTAAGCTTAAAAAGGTGGCTGCT
EST: gi|211212939|gb|FL424469.1|FL424469
EST:     CATCACTCAATGACTTTGACAGGTTCAAGGTCATGTTGGCGAAGATCAAG                         AGGGGTGGTGCCATCAGGCAAGAGCTTGCTAAGCTTAAAAAGGTGGCTGCT
genomic: CATCACTCAATGACTTTGACAGGTTCAAGGTCATGTTGGCGAAGATCAAGgtttggcata ... atttgaacagAGGGGCGGTGCCATTAGGCAAGAGCTTGCTAAGCTTAAAAAGGTGGCTGCT
EST: gi|211371321|gb|FL393832.1|FL393832
EST:     CATCACTCAATGACTTTGACAGGTTCAAGGTCATGTTGGCGAAGATCAAG                         AGGGGCGGTGCCATTAGGCAAGAGCTTGCTAAGCTTAAAAAGGTGGCTGCT
genomic: CATCACTCAATGACTTTGACAGGTTCAAGGTCATGTTGGCGAAGATCAAGgtttggcata ... atttgaacagAGGGGCGGTGCCATTAGGCAAGAGCTTGCTAAGCTTAAAAAGGTGGCTGCT
EST: gi|211516414|gb|FL409528.1|FL409528
EST:     CATCACTCAATGACTTTGACAGGTTCAAGGTCATGTTGGCGAAGATCAAG                         AGGGGCGGTGCCATTAGGCAAGAGCTTGCTAAGCTTAAAAAGGTGGCTGCT
genomic: CATCACTCAATGACTTTGACAGGTTCAAGGTCATGTTGGCGAAGATCAAGgtttggcata ... atttgaacagAGGGGCGGTGCCATTAGGCAAGAGCTTGCTAAGCTTAAAAAGGTGGCTGCT
EST: gi|15215168|gb|BI431186.1|BI431186
EST:     CATCACTCAATGACTTTGACAGGTTCAAGGTCATGTTGGCGAAGATCAAG                         AGGGGCGGTGCCATCAGGCAAGAGCTTGCTAAGCTTAAAAAGGTGGCTGCT
genomic: CATCACTCAATGACTTTGACAGGTTCAAGGTCATGTTGGCGAAGATCAAGgtttggcata ... atttgaacagAGGGGCGGTGCCATTAGGCAAGAGCTTGCTAAGCTTAAAAAGGTGGCTGCT
EST: gi|211194737|gb|FL410101.1|FL410101
EST:     CATCACTCAATGACTTTGACAGGTTCAAGGTCATGTTGGCGAAGATCAAG                         AGGGGCGGTGCCATTAGGCAAGAGCTTGCTAAGCTTAAAAAGGTGGCTGCT
genomic: CATCACTCAATGACTTTGACAGGTTCAAGGTCATGTTGGCGAAGATCAAGgtttggcata ... atttgaacagAGGGGCGGTGCCATTAGGCAAGAGCTTGCTAAGCTTAAAAAGGTGGCTGCT
EST: gi|8102651|gb|AW927299.1|AW927299
EST:     CATCACTCAATGACTTTGACAGGTTCAAGGTCATGTTGGCGAAGATCAAG                         AGGGGTGGTGCCATCAGGCAAGAGCTTGCTAAGCTTAAAAAGGTGGCTGCT
genomic: CATCACTCAATGACTTTGACAGGTTCAAGGTCATGTTGGCGAAGATCAAGgtttggcata ... atttgaacagAGGGGCGGTGCCATTAGGCAAGAGCTTGCTAAGCTTAAAAAGGTGGCTGCT
EST: gi|211363431|gb|FL397066.1|FL397066
EST:     CATCACTCAATGACTTTGACAGGTTCAAGGTCATGTTGGCGAAGATCAAG                         AGGGGCGGTGC-ATTAGGCAAGAGCTTGCTAAGCTTAAAAAGGTGGCTGC
genomic: CATCACTCAATGACTTTGACAGGTTCAAGGTCATGTTGGCGAAGATCAAGgtttggcata ... atttgaacagAGGGGCGGTGCCATTAGGCAAGAGCTTGCTAAGCTTAAAAAGGTGGCTGC
EST: gi|32164912|gb|CD670230.1|CD670230
EST:     CATCACTCAATGACTTTGACAGGTTCAAGGTCATGTTGGCGAAGATCAAG                         AGGGGCGGTGCCATTAGGCAAGAGCTTGCTAAGCTTAAAAAGGTGGCTGCT
genomic: CATCACTCAATGACTTTGACAGGTTCAAGGTCATGTTGGCGAAGATCAAGgtttggcata ... atttgaacagAGGGGCGGTGCCATTAGGCAAGAGCTTGCTAAGCTTAAAAAGGTGGCTGCT
EST: gi|60345487|gb|DN212460.1|DN212460
EST:     CATCACTCAATGACTTTGACAGGTTCAAGGTCATGTTGGCGAAGATCAAG                         AGGGGCGGTGCCATTAGGCAAGAGCTTGCTAAGCTTAAAAAGGTGGCTGCT
genomic: CATCACTCAATGACTTTGACAGGTTCAAGGTCATGTTGGCGAAGATCAAGgtttggcata ... atttgaacagAGGGGCGGTGCCATTAGGCAAGAGCTTGCTAAGCTTAAAAAGGTGGCTGCT
EST: gi|211341885|gb|FL422753.1|FL422753
EST:     CATCACTCAATGACTTTGACAGGTTCAAGGTCATGTTGGCGAAGATCAAG                         AGGGGCGGTGC-ATTAGGCAAGAGCTTGCTAAGCTTAAAAAGGTGGCTGCT
genomic: CATCACTCAATGACTTTGACAGGTTCAAGGTCATGTTGGCGAAGATCAAGgtttggcata ... atttgaacagAGGGGCGGTGCCATTAGGCAAGAGCTTGCTAAGCTTAAAAAGGTGGCTGCT
EST: gi|211524495|gb|FL408985.1|FL408985
EST:     CATCACTCAATGACTTTGACAGGTTCAAGGTCATGTTGGCGAAGATCAAG                         AGGGGCGGTGCCATTAGGCAAGAGCTTGCTAAGCTTAAAAAGGTGGCTGCT
genomic: CATCACTCAATGACTTTGACAGGTTCAAGGTCATGTTGGCGAAGATCAAGgtttggcata ... atttgaacagAGGGGCGGTGCCATTAGGCAAGAGCTTGCTAAGCTTAAAAAGGTGGCTGCT
EST: gi|7844182|gb|AW787404.1|AW787404
EST:     CATCACTCAATGACTTTGACAGGTTCAAGGTCATGTTGGCGAAGATCAAG                         AGGGGTGGTGCC-TCAGGCAAGAGCTTGCTAAGCTTAAAAAGGTGGCTGCT
genomic: CATCACTCAATGACTTTGACAGGTTCAAGGTCATGTTGGCGAAGATCAAGgtttggcata ... atttgaacagAGGGGCGGTGCCATTAGGCAAGAGCTTGCTAAGCTTAAAAAGGTGGCTGCT
EST: gi|211217095|gb|FL383478.1|FL383478
EST:     ATCACTGCAATGACTTTGACAGGTTCAAGGTCATGTTGGCGAAGATCAAG                         AGGGGCGGTGC-ATTAGGCAAGAGCTTGCTAAGCTTAAA
genomic: ATCACT-CAATGACTTTGACAGGTTCAAGGTCATGTTGGCGAAGATCAAGgtttggcata ... atttgaacagAGGGGCGGTGCCATTAGGCAAGAGCTTGCTAAGCTTAAA
EST: gi|211330632|gb|FL423266.1|FL423266
EST:     CATCACTCAATGACTTTGACAGGTTCAAGGTCATGTTGGCGAAGATCAAG                         AGGGGCGGTGCCATTAGGCAAGAGCTTGCTAAGCTTAAAAAGGTGGCTGCT
genomic: CATCACTCAATGACTTTGACAGGTTCAAGGTCATGTTGGCGAAGATCAAGgtttggcata ... atttgaacagAGGGGCGGTGCCATTAGGCAAGAGCTTGCTAAGCTTAAAAAGGTGGCTGCT
EST: gi|211325363|gb|FL370100.1|FL370100
EST:     CATCACTCAATGACTTTGACAGGTTCAAGGTCATGTTGGCGAAGATCAAG                         AGGGGCGGTGCCATTAGGCAAGAGCTTGCTAAGCTTAAAAAGGTGGCTGCT
genomic: CATCACTCAATGACTTTGACAGGTTCAAGGTCATGTTGGCGAAGATCAAGgtttggcata ... atttgaacagAGGGGCGGTGCCATTAGGCAAGAGCTTGCTAAGCTTAAAAAGGTGGCTGCT
EST: gi|211219621|gb|FL402180.1|FL402180
EST:     CATCACTCAATGACTTTGACAGGTTCAAGGTCATGTTGGCGAAGATCAAG                         AGGGGCGGTGCCATTAGG
genomic: CATCACTCAATGACTTTGACAGGTTCAAGGTCATGTTGGCGAAGATCAAGgtttggcata ... atttgaacagAGGGGCGGTGCCATTAGG
EST: gi|47962740|gb|CN845449.1|CN845449
EST:     GGTTCAAGGTCATGTTGGCGAAGATCAAG                         AGGGGCGGTGCCATCAGGCAAGAGCTTGCTAAGCTTAAAAAGGTGGCTGCT
genomic: GGTTCAAGGTCATGTTGGCGAAGATCAAGgtttggcata ... atttgaacagAGGGGCGGTGCCATTAGGCAAGAGCTTGCTAAGCTTAAAAAGGTGGCTGCT
EST: gi|60339771|gb|DN206744.1|DN206744
EST:     CATCACTCAATGACTTTGACAGGTTCAAGGTCATGTTGGCGAAGATCAAG                         AGGGGCGGTGCCATTAGGCAAGAGCTTGCTAAGCTTAAAAAGGTGGCTGCT
genomic: CATCACTCAATGACTTTGACAGGTTCAAGGTCATGTTGGCGAAGATCAAGgtttggcata ... atttgaacagAGGGGCGGTGCCATTAGGCAAGAGCTTGCTAAGCTTAAAAAGGTGGCTGCT
EST: gi|33096829|gb|CF056789.1|CF056789
EST:     CATCACTCAATGACTTTGACAGGTTCAAGGTCATGTTGGCGAAGATCAAG                         AGGGGTGGTGCCATCAGGCAAGAGCTTGCTAAGCTTAAAAAGGTGGCTGCT
genomic: CATCACTCAATGACTTTGACAGGTTCAAGGTCATGTTGGCGAAGATCAAGgtttggcata ... atttgaacagAGGGGCGGTGCCATTAGGCAAGAGCTTGCTAAGCTTAAAAAGGTGGCTGCT
EST: gi|20300679|gb|BQ163622.1|BQ163622
EST:     CATCACTCAATGACTTTGACAGGTTCAAGGTCATGTTGGCGAAGATCAAG                         AGGGGCGGTGCCATTAGGCAAGAGCTTGCTAAGCTTAAAAAGGTGGCTGCT
genomic: CATCACTCAATGACTTTGACAGGTTCAAGGTCATGTTGGCGAAGATCAAGgtttggcata ... atttgaacagAGGGGCGGTGCCATTAGGCAAGAGCTTGCTAAGCTTAAAAAGGTGGCTGCT
EST: gi|67011948|gb|CO440697.1|CO440697
EST:     CATCACTCAATGACTTTGACAGGTTCAAGGTCATGTTGGCGAAGATCAAG                         AGGGGCGGTGCCATTAGGCAAGAGCTTGCTAAGCTTAAAAAGGTGGCTGCT
genomic: CATCACTCAATGACTTTGACAGGTTCAAGGTCATGTTGGCGAAGATCAAGgtttggcata ... atttgaacagAGGGGCGGTGCCATTAGGCAAGAGCTTGCTAAGCTTAAAAAGGTGGCTGCT
EST: gi|211153455|gb|FL403820.1|FL403820
EST:     CATCACTCAATGACTTTGACAGGTTCAAGGTCATGTTGGCGAAGATCAAG                         AGGGGCGGTGCCATTAGGCAAGAGCTTGCTAAGCTTAAAAAGGTGGCTGCT
genomic: CATCACTCAATGACTTTGACAGGTTCAAGGTCATGTTGGCGAAGATCAAGgtttggcata ... atttgaacagAGGGGCGGTGCCATTAGGCAAGAGCTTGCTAAGCTTAAAAAGGTGGCTGCT
EST: gi|4753345|gb|AI657250.1|AI657250
EST:     CATCACTCAATGACTTTGACAGGTTCAAGGTCATGTTGGCGAAGATCAAG                         AGGGGCGGTGCCATTAGGCAAGAGCTTGCTAAGCTTAAAAAGGTGGCTGCT
genomic: CATCACTCAATGACTTTGACAGGTTCAAGGTCATGTTGGCGAAGATCAAGgtttggcata ... atttgaacagAGGGGCGGTGCCATTAGGCAAGAGCTTGCTAAGCTTAAAAAGGTGGCTGCT
EST: gi|211257174|gb|FL417863.1|FL417863
EST:     CATCACTCAATGACTTTGACAGGTTCAAGGTCATGTTGGCGAAGATCAAG                         AGGGGCGGTGCCATTAGGCAAGAGCTTGCTAAGCTTAAAAAGGTGGCTGCT
genomic: CATCACTCAATGACTTTGACAGGTTCAAGGTCATGTTGGCGAAGATCAAGgtttggcata ... atttgaacagAGGGGCGGTGCCATTAGGCAAGAGCTTGCTAAGCTTAAAAAGGTGGCTGCT
EST: gi|211137666|gb|FL400355.1|FL400355
EST:     CATCACTCAATGACTTTGACAGGTTCAAGGTCATGTTGGCGAAGATCAAG                         AGGGGCGGTGC-ATTAGGCAAGAGCTTGCTAAGCTTAAAAAGGTGGCTGCT
genomic: CATCACTCAATGACTTTGACAGGTTCAAGGTCATGTTGGCGAAGATCAAGgtttggcata ... atttgaacagAGGGGCGGTGCCATTAGGCAAGAGCTTGCTAAGCTTAAAAAGGTGGCTGCT
EST: gi|211162916|gb|FL392798.1|FL392798
EST:     CATCACTCAATGACTTTGACAGGTTCAAGGTCATGTTGGCGAAGATCAAG                         AGGGGCGGTGC-ATTAGGCAAGAGCTTGCTAAG
genomic: CATCACTCAATGACTTTGACAGGTTCAAGGTCATGTTGGCGAAGATCAAGgtttggcata ... atttgaacagAGGGGCGGTGCCATTAGGCAAGAGCTTGCTAAG
EST: gi|211163059|gb|FL403919.1|FL403919
EST:     CATCACTCAATGACTTTGACAGGTTCAAGGTCATGTTGGCGAAGATCAAG                         AGGGGCGGTGC-ATTAGGCAAGAGCTTGCTAAGCTTAAAAAGGTGGCTGCT
genomic: CATCACTCAATGACTTTGACAGGTTCAAGGTCATGTTGGCGAAGATCAAGgtttggcata ... atttgaacagAGGGGCGGTGCCATTAGGCAAGAGCTTGCTAAGCTTAAAAAGGTGGCTGCT
EST: gi|31997790|gb|CD661772.1|CD661772
EST:     CATCACTCAATGACTTTGACAGGTTCAAGGTCATGTTGGCGAAGATCAAG                         AGGGGCGGTGCCATTAGGCAAGAGCTTGCTAAGCTTAAAAAGGTGGCTGCT
genomic: CATCACTCAATGACTTTGACAGGTTCAAGGTCATGTTGGCGAAGATCAAGgtttggcata ... atttgaacagAGGGGCGGTGCCATTAGGCAAGAGCTTGCTAAGCTTAAAAAGGTGGCTGCT
EST: gi|31997792|gb|CD661773.1|CD661773
EST:     CATCACTCAATGACTTTGACAGGTTCAAGGTCATGTTGGCGAAGATCAAG                         AGGGGCGGTGCCATTAGGCAAGAGCTTGCTAAGCTTAAAAAGGTGGCTGCT
genomic: CATCACTCAATGACTTTGACAGGTTCAAGGTCATGTTGGCGAAGATCAAGgtttggcata ... atttgaacagAGGGGCGGTGCCATTAGGCAAGAGCTTGCTAAGCTTAAAAAGGTGGCTGCT
EST: gi|211478910|gb|FL382320.1|FL382320
EST:     CATCACTCAATGACTTTGACAGGTTCAAGGTCATGTTGGCGAAGATCAAG                         AGGGGCGGTGCCATTAGGCAAGAGCTTGCTAAGCTTAAAAAGGTGGCTGCT
genomic: CATCACTCAATGACTTTGACAGGTTCAAGGTCATGTTGGCGAAGATCAAGgtttggcata ... atttgaacagAGGGGCGGTGCCATTAGGCAAGAGCTTGCTAAGCTTAAAAAGGTGGCTGCT
EST: gi|211060388|gb|FL405184.1|FL405184
EST:     CATCACTCAATGACTTTGACAGGTTCAAGGTCATGTTGGCGAAGATCAAG                         AGGGGCGGTGCCATTAGGCAAGAGCTTGCTAAGCTTAAAAAGGTGGCTGCT
genomic: CATCACTCAATGACTTTGACAGGTTCAAGGTCATGTTGGCGAAGATCAAGgtttggcata ... atttgaacagAGGGGCGGTGCCATTAGGCAAGAGCTTGCTAAGCTTAAAAAGGTGGCTGCT
EST: gi|32164911|gb|CD670229.1|CD670229
EST:     CATCACTCAATGACTTTGACAGGTTCAAGGTCATGTTGGCGAAGATCAAG                         AGGGGCGGTGCCATTAGGCAAGAGCTTGCTAAGCTTAAAAAGGTGGCTGCT
genomic: CATCACTCAATGACTTTGACAGGTTCAAGGTCATGTTGGCGAAGATCAAGgtttggcata ... atttgaacagAGGGGCGGTGCCATTAGGCAAGAGCTTGCTAAGCTTAAAAAGGTGGCTGCT
EST: gi|22490936|gb|BU050859.1|BU050859
EST:     CATCACTCAATGACTTTGACAGGTTCAAGGTCATGTTGGCGAAGATCAAG                         AGGGGCGGTGCCATTAGGCAAGAGCTTGCTAAGCTTAAAAAGGTGGCTGCT
genomic: CATCACTCAATGACTTTGACAGGTTCAAGGTCATGTTGGCGAAGATCAAGgtttggcata ... atttgaacagAGGGGCGGTGCCATTAGGCAAGAGCTTGCTAAGCTTAAAAAGGTGGCTGCT
EST: gi|83278782|gb|DV942790.1|DV942790
EST:     CATCACTCAATGACTTTGACAGGTTCAAGGTCATGTTGGCGAAGATCAAG                         AGGGGCGGTGCCATTAGGCAAGAGCTTGCTAAGCTTAAAAAGGTGGCTGCT
genomic: CATCACTCAATGACTTTGACAGGTTCAAGGTCATGTTGGCGAAGATCAAGgtttggcata ... atttgaacagAGGGGCGGTGCCATTAGGCAAGAGCTTGCTAAGCTTAAAAAGGTGGCTGCT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 265

GTGGGAGAATAGCTCATGGGGCAAGAAGCTGATTGTTCAGAAGAGGAGAGCATCACTCAATGACTTTGACAGGTTCAAGGTCATGTTGGCGAAGATCAAGgtttggcata ... atttgaacagAGGGGCGGTGCCATTAGGCAAGAGCTTGCTAAGCTTAAAAAGGTGGCTGCTGCTGCTTAGATTGCTTTGGTGGTTCCTCTATTCGATCTCTTGAAATGTA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 234

GTGGGAGAATAGCTCATGGGGCAAGAAGCTGATTGTTCAGAAGAGGAGAGCATCACTCAATGACTTTGACAGGTTCAAGGTCATGTTGGCGAAGATCAAGgtttggcata ... atttgaacagAGGGGCGGTGCCATTAGGCAAGAGCTTGCTAAGCTTAAAAAGGTGGCTGCTGCTGCTTAGATTGCTTTGGTGGTTCCTCTATTCGATCTCTTGAAATGTA


Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 217

GTGGGAGAATAGCTCATGGGGCAAGAAGCTGATTGTTCAGAAGAGGAGAGCATCACTCAATGACTTTGACAGGTTCAAGGTCATGTTGGCGAAGATCAAGgtttggcata ... atttgaacagAGGGGCGGTGCCATTAGGCAAGAGCTTGCTAAGCTTAAAAAGGTGGCTGCTGCTGCTTAGATTGCTTTGGTGGTTCCTCTATTCGATCTCTTGAAATGTA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 103

GTGGGAGAATAGCTCATGGGGCAAGAAGCTGATTGTTCAGAAGAGGAGAGCATCACTCAATGACTTTGACAGGTTCAAGGTCATGTTGGCGAAGATCAAGgtttggcata ... atttgaacagAGGGGCGGTGCCATTAGGCAAGAGCTTGCTAAGCTTAAAAAGGTGGCTGCTGCTGCTTAGATTGCTTTGGTGGTTCCTCTATTCGATCTCTTGAAATGTA


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTGGGAGAATAGCTCATGGGGCAAGAAGCTGATTGTTCAGAAGAGGAGAGCATCACTCAATGACTTTGACAGGTTCAAGGTCATGTTGGCGAAGATCAAGgtttggcatattctagagtaattaatttatccattgttctgcttatttcctaatatactggtatggttgtcatttgaacag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA