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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTCAACGAAGTGGTGGCGGTGACCGGCGACGGCACCAACGACGCGCCGGCGTTGCACGAGGCCGACATCGGCCTCGCCATGGGCATTGCAGGAACAGAGgtttgttgtagtagtagtagtacccttgctcacgccatgtctttcctggcgacaaccgcttcacgcctgcaacaacttctggtcag

Basic information

species Zea mays
transcript GRMZM2G028812_T01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G028812_T01 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os01g71240.1 (Oryza sativa), 5'ss of exon 4
GTTCAACGAAGTGGTGGCGGTGACCGGCGACGGCACCAACGACGCGCCGGCGTTGCACGAGGCCGACATCGGCCTCGCCATGGGCATTGCAGGAACAGAGgtttgttgtagtagtagtagtacccttgctcacgccatgtctt--tcctggcgacaacc-----gcttcacgcctgcaacaacttctggtcag---------
||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| || |||||||||||| ||  || |  ||           | | |    |||| ||     |||  | |  |     |||| | |  ||    |  || | |  |          
GTTCAACGAGGTGGTGGCGGTGACCGGCGACGGCACCAACGACGCGCCGGCGCTGCACGAGGCCGACATCGGCCTCGCCATGGGCATCGCTGGAACAGAGgttcgtactact--tacctccgtttcaggttataagatgttttgactttggtcaaagtcaaattgctttaagtttgactaagtttgtagaaaaaaatatttt

upper sequence: GRMZM2G028812_T01 (Zea mays), 5'ss of exon 4
lower sequence: Vv08s0007g08960.t01 (Vitis vinifera), 5'ss of exon 4
GTTCAACGAAGTGGTGGCGGTGACCGGCGACGGCACCAACGACGCGCCGGCGTTGCACGAGGCCGACATCGGCCTCGCCATGGGCATTGCAGGAACAGAGgtttgttgtagtagtagtagtacccttgctcacgccatgtctttcctggcgacaaccg--------cttcacgcctgcaacaacttctggtcag---------
||     || || || || ||||| || || || || || || || || || ||||| ||||| ||||| || || ||||||||||| || |||||||||||||| |          |  ||    | ||       ||| ||| ||| |   | | |        ||||  |  |||| ||  |  |  | ||         
GTATGGTGAGGTTGTTGCAGTGACAGGTGATGGGACAAATGATGCACCAGCTTTGCATGAGGCTGACATTGGGCTTGCCATGGGCATAGCTGGAACAGAGgtttgcttatccgaccatcttatg--tactagtcatctgtttttactgcccttatctgttgtctttcttcttggttgca-cagttattttttagttttttgat

upper sequence: GRMZM2G028812_T01 (Zea mays), 5'ss of exon 4
lower sequence: Vv13s0158g00360.t01 (Vitis vinifera), 5'ss of exon 4
GTTCAACGAAGTGGTGGCGGTGACCGGCGACGGCACCAACGACGCGCCGGCGTTGCACGAGGCCGACATCGGCCTCGCCATGGGCATTGCAGGAACAGAGgtttgtt--------------gtagtagtagtagtacccttgc-tcacgccatgtctttcctggcgacaaccgcttcacgcctgcaacaacttctggtcag
 || || ||||| ||||| ||||| ||||| || |||||||| || || || ||||| ||||| ||||| || || ||||||||||| |||||||| ||||||||||               || | | || ||| |  | |  ||| |     | ||||    |    |||   |  |   |   ||||  |    ||| 
ATTTAAAGAAGTTGTGGCAGTGACTGGCGATGGGACCAACGATGCTCCTGCTTTGCATGAGGCGGACATTGGACTTGCCATGGGCATAGCAGGAACTGAGgtttgtttaataccttgccatataattgcagcagttctttggaatcatgat-catttttctcatcacttacccggtttcatttattacaagatagattcac