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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCATCCAAGGATCATTCACAGGGATATCAAGTCGTCAAACATCTTGCTTGATGACCAGTTTGAGGCTCAGgtcagcttgttaccataccaaattttcgacatttcagagctatgaacgctgaggtcgacgatgttcttcag

Basic information

species Zea mays
transcript GRMZM2G028731_T01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G028731_T01 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA01G23180.1 (Glycine max), 5'ss of exon 4
GTCATCCAAGGATCATTCACAGGGATATCAAGTCGTCAAACATCTTGCTTGATGACCAGTTTGAGGCTCAGgtcagcttgttaccataccaaatt-ttcgacatttcagagctatgaacgctgaggtcgacgatgttcttcag----------------------
|  | || |||||||||||||||||||||||||| ||||||||  |  | |||  | | | ||| ||  ||||     ||| |   |||  | || ||  |  ||| | || |        |    || |   |  ||||                         
GCAACCCTAGGATCATTCACAGGGATATCAAGTCATCAAACATTCTTTTAGATTTCAATTATGAAGCCAAGgt--atctgtcattctacgtacttatttaaagtttgatagtttgttctatttttatccatcctaatcttagtactccaatttttaatgttatag

upper sequence: GRMZM2G028731_T01 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA02G14310.1 (Glycine max), 5'ss of exon 4
GTCATCCAAGGATCATTCACAGGGATATCAAGTCGTCAAACATCTTGCTTGATGACCAGTTTGAGGCTCAGgtcagcttgttaccataccaaatt-ttcgacatttcagagctatgaacgctgaggtcgacgatgttcttcag----------------------
|  | || |||||||||||||||||||||||||| ||||||||  |  | |||  | | ||||| ||  ||||     ||| |   |||  | || ||| |  ||| | || |        | |  || |      ||||                         
GCAACCCTAGGATCATTCACAGGGATATCAAGTCATCAAACATTCTCTTAGATTTCAATTTTGAAGCCAAGgt--atctgtcattctacgtacttattcaaagtttgatagtttgttctatttatatccatccaaatcttagtactccaagttttaatgttatag