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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGCAGATCTGCAAAATCCTCAGATGAACTTTGATGGAAAGGCATGTGCTGCTGTTGGTCAAAGTGTCCTGATGGCGATCTATGACACATTATTTAGCCAAgtgagtcatgcaccaccaatttgtatcctagtggtaaaaagagtttggcgttacctgtttctaacaggatgcttatatgattacag

Basic information

species Zea mays
transcript GRMZM2G028535_T01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G028535_T02 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os01g62900.1 (Oryza sativa), 5'ss of exon 4
CGCAGATCTGCAAAATCCTCAGATGAACTTTGATGGAAAGGCATGTGCTGCTGTTGGTCAAAGTGTCCTGATGGCGATCTATGACACATTATTTAGCCAAgtgagtcatgcaccaccaatttgtatcctagtggtaaaaagagtttggcgttacctgtttcta-acaggatgcttatatgattacag
||| |||||||| || || |||||| || | || || ||||| || ||||| || ||||| ||||| |||||||||||||||||||| ||||||||||| ||  |     ||   |  ||   | |    ||   ||| |   |||      |  | |||  | ||   |  |||   |   | |||
CGCTGATCTGCAGAACCCACAGATGGACATGGACGGGAAGGCCTGCGCTGCCGTCGGTCAGAGTGTGCTGATGGCGATCTATGACACGTTATTTAGCCAGgttggcgtgccattcctgatggatttttgtgtaaaaaatatgatttttttgcatatattttgacacgttaaacttccttcgctgcag

upper sequence: GRMZM2G028535_T02 (Zea mays), 5'ss of exon 4
lower sequence: Vv13s0019g02360.t01 (Vitis vinifera), 5'ss of exon 4
CGCAGATCTGCAAAATCCTCAGATGAACTTTGATGGAAAGGCATGTGCTGCTGTTGGTCAAAGTGTCCTGATGGCGATCTATGACACATTATTTAGCCAAgtgagtcatgca--ccaccaatt-tgtatcctagtggtaaaaagagtttggcgttacct-gtttctaacaggatgcttatatgattacag------------------------------------------------------------------------------------------------------
 || ||||| ||||| || ||     |  ||||||| ||||| ||||| |||||||| |||| |  ||| |||||  |||||||||||||||||||||| || |  ||   |     |   || | | | ||    ||| |  |  ||      ||  | || |   |     | || ||  |      |                                                                                                      
TGCTGATCTCCAAAAACCACAAGCTGAGCTTGATGGTAAGGCGTGTGCAGCTGTTGGACAAAATAACCTTATGGCTCTCTATGACACATTATTTAGCCAGgtaaagcacataatttgctttttatctgttctgtgagtacaggggattgatttgtattttgtcttcgattatctactaatgcgccccttgctagttggttctgttggttgatgttttcaatacacatgtcattctctactcttttaatttttgaatctaatgccctctttttttaattttctttatatccag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88755722|gb|DY539863.1|DY539863
EST:     CTGTTGGTCAAAGTGTCCTGATGGCGATCTATGACACATTATTTAGCCAA                         CTTGATGTAACGTCATCTCAACTTCTTGTGACGGATCGTGATTTCAAGGAT
genomic: CTGTTGGTCAAAGTGTCCTGATGGCGATCTATGACACATTATTTAGCCAAgtgagtcatg ... atgattacagCTTGATGTAACGTCATCTCAACTTCTTGTGACGGATCGTGATTTCAAGGAT
EST: gi|6021065|gb|AW065993.1|AW065993
EST:     CTGTTGGTCAAAGTGTCCTGATGGCGATCTATGACACATTATTTAGCCAA                         CTTGATGTAACGTCATCTCAACTTCTTGTGACGGATCGTGATTTCAAGGAT
genomic: CTGTTGGTCAAAGTGTCCTGATGGCGATCTATGACACATTATTTAGCCAAgtgagtcatg ... atgattacagCTTGATGTAACGTCATCTCAACTTCTTGTGACGGATCGTGATTTCAAGGAT
EST: gi|149066720|gb|EE286861.2|EE286861
EST:     CTGTTGGTCAAAGTGTCCTGATGGCGATCTATGACACATTATTTAGCCAA                         CTTGATGTAACGTCATCTCAACTTCTTGTGACGGATCGTGATTTCAAGGAT
genomic: CTGTTGGTCAAAGTGTCCTGATGGCGATCTATGACACATTATTTAGCCAAgtgagtcatg ... atgattacagCTTGATGTAACGTCATCTCAACTTCTTGTGACGGATCGTGATTTCAAGGAT
EST: gi|74245732|gb|DT653646.1|DT653646
EST:     CTGTTGGTCAAAGTGTCCTGATGGCGATCTATGACACATTATTTAGCCAA                         CTTGATGTAACGTCATCTCAACTTCTTGTGACGGATCGTGATTTCAAGGAT
genomic: CTGTTGGTCAAAGTGTCCTGATGGCGATCTATGACACATTATTTAGCCAAgtgagtcatg ... atgattacagCTTGATGTAACGTCATCTCAACTTCTTGTGACGGATCGTGATTTCAAGGAT
EST: gi|101391687|gb|EB817780.1|EB817780
EST:     CTGTTGGTCAAAGTGTCCTGATGGCGATCTATGACACATTATTTAGCCAA                         CTTGATGTAACGTCATCTCAACTTCTTGTGACGGATCGTGATTTCAAGGAT
genomic: CTGTTGGTCAAAGTGTCCTGATGGCGATCTATGACACATTATTTAGCCAAgtgagtcatg ... atgattacagCTTGATGTAACGTCATCTCAACTTCTTGTGACGGATCGTGATTTCAAGGAT