1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
TGATAAAGTTGTGCCGGAGAAGAAAGTTCTTGAAGTGGTAGTTGAGAAAGGTATGCAGAATGGGCAGAAGATCACATTCCCTGGCGAAGCTGATGAAGCGgtaatgactccttagtcctcagttctaaagttattcctctggcacaaactaaacttctgttctaactaatgtgtgcaaccttgggttctaactatgttgtgctcgtgtgcag
species | Zea mays |
transcript | GRMZM2G028218_T01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GTATGCAGAACGGGCAGAAGATCACATTCCCTGGCGAAGCTGATGAAGCG CCTGATACTGCCACTGGAGATATCATCTTTGTTCTCCAGCAGAAGGAGCATEST: gi|67030348|gb|CO459097.1|CO459097
genomic: GTATGCAGAATGGGCAGAAGATCACATTCCCTGGCGAAGCTGATGAAGCGgtaatgactc ... tcgtgtgcagCCTGATACTGCCACTGGAGATATCATCTTTGTTCTCCAGCAGAAGGAGCAT
EST: GTATGCAGAACGGGCAGAAGATCACATTCCCTGGCGAAGCTGATGAAGCG CCTGATACTGCCACTGGAGATATCATCTTTGTTCTCCAGCAGAAGGAGCATEST: gi|31360427|gb|CD444784.1|CD444784
genomic: GTATGCAGAATGGGCAGAAGATCACATTCCCTGGCGAAGCTGATGAAGCGgtaatgactc ... tcgtgtgcagCCTGATACTGCCACTGGAGATATCATCTTTGTTCTCCAGCAGAAGGAGCAT
EST: GTATGCAGAACGGGCAGAAGATCACATTCCCTGGCGAAGCTGATGAAGCG CCTGATACTGCCACTGGAGATATTATCTTTGTTCTCCAGCAGAAGGAGCATEST: gi|32845339|gb|CD985020.1|CD985020
genomic: GTATGCAGAATGGGCAGAAGATCACATTCCCTGGCGAAGCTGATGAAGCGgtaatgactc ... tcgtgtgcagCCTGATACTGCCACTGGAGATATCATCTTTGTTCTCCAGCAGAAGGAGCAT
EST: GTATGCAGAACGGGCAGAAGATCACATTCCCTGGCGAAGCTGATGAAGCA CCTGATACTACCACTGGAGATATCATCTTTGTTCTCCAGCAGAAGGAGCATEST: gi|33100170|gb|CF060130.1|CF060130
genomic: GTATGCAGAATGGGCAGAAGATCACATTCCCTGGCGAAGCTGATGAAGCGgtaatgactc ... tcgtgtgcagCCTGATACTGCCACTGGAGATATCATCTTTGTTCTCCAGCAGAAGGAGCAT
EST: GTATGCAGAACGGGCAGAAGATCACATTCCCTGGCGAAGCTGATGAAGCA CCTGATACTACCACTGGAGATATCATCTTTGTTCTCCAGCAGAAGGAGCATEST: gi|67035410|gb|CO463943.1|CO463943
genomic: GTATGCAGAATGGGCAGAAGATCACATTCCCTGGCGAAGCTGATGAAGCGgtaatgactc ... tcgtgtgcagCCTGATACTGCCACTGGAGATATCATCTTTGTTCTCCAGCAGAAGGAGCAT
EST: GTATGCAGAACGGGCAGAAGATCACATTCCCTGGCGAAGCTGATGAAGCG CCTGATACTGGCACTGGAGATATCATCTTTGNTCTCCAGCAGAAGGAGCATEST: gi|51592714|gb|CV071860.1|CV071860
genomic: GTATGCAGAATGGGCAGAAGATCACATTCCCTGGCGAAGCTGATGAAGCGgtaatgactc ... tcgtgtgcagCCTGATACTGCCACTGGAGATATCATCTTTGTTCTCCAGCAGAAGGAGCAT
EST: GTATGCAGAACGGGCAGAAGATCACATTCCCTGGCGAAGCTGATGAAGCG CCTGATACTGCCACTGGAGATATCATCTTTGTTCTCCAGCAGAAGGAGCATEST: gi|32845319|gb|CD985000.1|CD985000
genomic: GTATGCAGAATGGGCAGAAGATCACATTCCCTGGCGAAGCTGATGAAGCGgtaatgactc ... tcgtgtgcagCCTGATACTGCCACTGGAGATATCATCTTTGTTCTCCAGCAGAAGGAGCAT
EST: GTATGCAGAACGGGCAGAAGATCACATTCCCTGGCGAAGCTGATGAAGCA CCTGATACTACCACTGGAGATATCATCTTTGTTCTCCAGCAGAAGGAGCATEST: gi|67038376|gb|CO464706.1|CO464706
genomic: GTATGCAGAATGGGCAGAAGATCACATTCCCTGGCGAAGCTGATGAAGCGgtaatgactc ... tcgtgtgcagCCTGATACTGCCACTGGAGATATCATCTTTGTTCTCCAGCAGAAGGAGCAT
EST: -TATGCAGAACGGGCAGAAGATCACATTCCCTGGCGAAGCTGATGAAGCG CCTGATACTGCCACTGGAGA-ATCATCTTNGNTCTCCAGCAGAAGGAGCATEST: gi|7162265|gb|AW519872.1|AW519872
genomic: GTATGCAGAATGGGCAGAAGATCACATTCCCTGGCGAAGCTGATGAAGCGgtaatgactc ... tcgtgtgcagCCTGATACTGCCACTGGAGATATCATCTTTGTTCTCCAGCAGAAGGAGCAT
EST: GTATGCAGAACGGGCAGAAGATCACATTCCCTGGCGAAGCTGATGAAGCG CCTGATACTGCCACTGGAGATATCATCTTTGTTCTCCAGCAGAAGGAGCATEST: gi|32836749|gb|CD976427.1|CD976427
genomic: GTATGCAGAATGGGCAGAAGATCACATTCCCTGGCGAAGCTGATGAAGCGgtaatgactc ... tcgtgtgcagCCTGATACTGCCACTGGAGATATCATCTTTGTTCTCCAGCAGAAGGAGCAT
EST: GTATGCAGAACGGGCAGAAGATCACATTCCCTGGCGAAGCTGATGAAGCA CCTGATACTACCACT
genomic: GTATGCAGAATGGGCAGAAGATCACATTCCCTGGCGAAGCTGATGAAGCGgtaatgactc ... tcgtgtgcagCCTGATACTGCCACT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGATAAAGTTGTGCCGGAGAAGAAAGTTCTTGAAGTGGTAGTTGAGAAAGGTATGCAGAATGGGCAGAAGATCACATTCCCTGGCGAAGCTGATGAAGCGgtaatgactccttagtcctcagttctaaagttattcctctggcacaaactaaacttctgttctaactaatgtgtgcaaccttgggttctaactatgttgtgctcgtgtgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC