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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCTCTTGGTGCTGCGAAAGGCCTCGCTTTTCTTCATGAAGAAGCTGAAAGACCAGTAATCTATCGGGACTTCAAAACCTCCAATATTCTTTTAGATGCGgtaagcaactatattgaaatgttaaaaatattcattcatacaaatgtatttgctaacatatttttttcag

Basic information

species Zea mays
transcript GRMZM2G028037_T02
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G028037_T02 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os01g40590.1 (Oryza sativa), 5'ss of exon 4
TGCTCTTGGTGCTGCGAAAGGCCTCGCTTTTCTTCATGAAGAAGCTGAAAGACCAGTAATCTATCGGGACTTCAAAACCTCCAATATTCTTTTAGATGCGgtaagcaactatattgaa----------atgttaaaaatattcattcatacaaatgtatt-------tgctaacatattt-ttttcag
 || ||||||||||| || ||||| |||||||||||||||||||||||||| ||||| ||||||||||| |||||||| || |||||||||||||| |||||| ||||| || ||  |          || ||| |||| |||||| | |       |||       | || | |||||  |||||||
AGCACTTGGTGCTGCTAAGGGCCTTGCTTTTCTTCATGAAGAAGCTGAAAGGCCAGTTATCTATCGGGATTTCAAAACTTCAAATATTCTTTTAGACGCGgtatgcaaccatgtttgagaatcaaaacatattagaaatgttcatttagattgtaacattctcatatttcttaaatattcattttcag

upper sequence: GRMZM2G028037_T02 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA02G02570.1 (Glycine max), 5'ss of exon 4
TGCTCTTGGTGCTGCGAAAGGCCTCGCTTTTCTTCATGAAGAAGCTGAAAGACCAGTAATCTATCGGGACTTCAAAACCTCCAATATTCTTTTAGATGCGgtaagcaactatattgaaatgttaaaaatattcattcatacaaatgtatttgctaacatatttttttcag
||| || || ||||| || || || |||||||||||||||||||||||| |||||||||| ||| |||| || ||||| || || ||  |  | ||||| |||||   | | |   | |     |    |||    | |    ||   | |  ||   ||    || |||
TGCACTAGGAGCTGCTAAGGGTCTTGCTTTTCTTCATGAAGAAGCTGAACGACCAGTAATATATAGGGATTTTAAAACTTCAAACATATTACTGGATGCAgtaagtgtcaaaaactacaataagattgcatttccccctttttatcagtctaatattgtaccgatt-cag

upper sequence: GRMZM2G028037_T02 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA09G37580.1 (Glycine max), 5'ss of exon 4
TGCTCTTGGTGCTGCGAAAGGCCTCGCTTTTCTTCATGAAGAAGCTGAAAGACCAGTAATCTATCGGGACTTCAAAACCTCCAATATTCTTTTAGATGCGgtaagcaactatattg----aaatgttaaaaata----ttcattcat------acaaatgtatttgctaacatattt-ttttcag
||| ||||||||||| ||||| ||  ||||||| |||||||||||| | || || ||||||||||| || || || || || |||||||| |||||||||||| |  | |  |       ||| |||   |||     || || |||      ||| |   |  |   |||||| || |||| ||
TGCACTTGGTGCTGCAAAAGGTCTTACTTTTCTCCATGAAGAAGCTCAGAGGCCTGTAATCTATCGTGATTTTAAGACATCTAATATTCTGTTAGATGCGgtatgtgagttaaccaggaaaaaggtttttaattattttttatccatcctccaacataaaaacataaaaacataattgtttttag

upper sequence: GRMZM2G028037_T02 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA01G04930.1 (Glycine max), 5'ss of exon 4
TGCTCTTGGTGCTGCGAAAGGCCTCGCTTTTCTTCATGAAGAAGCTGAAAGACCAGTAATCTATCGGGACTTCAAAACCTCCAATATTCTTTTAGATGCGgtaagcaactatattgaaatgttaaaaatattcattcatacaaatgtatttg-ctaacatattttt--ttcag
||| || || ||||| || || || |||||||||||||||||||||||| |||||||||| ||| |||| || ||||| || || ||  |  ||||||| |||||   |   |     |   ||| | |    |||    |   | | || | |||| ||        |||||
TGCACTAGGAGCTGCTAAGGGTCTTGCTTTTCTTCATGAAGAAGCTGAACGACCAGTAATATATAGGGATTTTAAAACTTCAAACATATTACTAGATGCAgtaagtgcccgaaact--acaataagattgcatatttcctcctttttgttagtctaatattgccccaattcag

upper sequence: GRMZM2G028037_T02 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA18G49060.1 (Glycine max), 5'ss of exon 4
-TGCTCTTGGTGCTGCGAAAGGCCTCGCTTTTCTTCATGAAGAAGCTGAAAGACCAGTAATCTATCGGGACTTCAAAACCTCCAATATTCTTTTAGATGCGgtaagcaactatattgaaa-------tgttaaaaatattc-attcat------acaaatgtatttgctaacatatttttttcag
 ||| ||||||||||| ||||| || |||||||| |||||||||||| ||||||| ||||||||||| || || || || || |||||||| |||||||||||| |  | |  |     |       | ||||  || ||| || |||      ||| |   |  |   |||||| || |||   
TTGCACTTGGTGCTGCAAAAGGTCTTGCTTTTCTCCATGAAGAAGCTCAAAGACCTGTAATCTATCGTGATTTTAAGACGTCTAATATTCTATTAGATGCggtatgtgagttaaccaggaaaaaggtttttaattattttctatccatcctccaacataaaaacataaaaacataattgttttta

upper sequence: GRMZM2G028037_T02 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA19G02360.1 (Glycine max), 5'ss of exon 3
TGCTCTTGGTGCTGCGAAAGGCCTCGCTTTTCTTCATGAAGAAGCTGAAAGACCAGTAATCTATCGGGACTTCAAAACCTCCAATATTCTTTTAGATGCGgtaagcaacta----tattgaaatgttaaaaatattcattcatacaaatgt-----atttgctaacatattttttt-cag
||| |||||||| || ||||| || |||||||| |||||||| ||| | || ||  |||| ||||| || |||||||| || ||||| || |||||||||||| | |  |     |||| |    ||   | |  || | ||  ||||        || |   || | |  | |||  ||
TGCACTTGGTGCAGCCAAAGGTCTTGCTTTTCTCCATGAAGAGGCTCAGAGGCCCATAATATATCGTGATTTCAAAACATCTAATATACTATTAGATGCGgtatgtaggtgaaggtattaattatttcttattcatcctccaaccaaaaagcaaaaatctaaaaaaacaaatgtttatag

upper sequence: GRMZM2G028037_T02 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA08G40770.1 (Glycine max), 5'ss of exon 4
TGCTCTTGGTGCTGCGAAAGGCCTCGCTTTTCTTCATGAAGAAGCTGAAAGACCAGTAATCTATCGGGACTTCAAAACCTCCAATATTCTTTTAGATGCGgtaagcaacta--tattgaaatgttaaaaatattcattcatacaaatgtatttgctaacatatttttttcag-------
||| ||||| ||||| || || || |||||||||||||| ||||||||| |||||||||| ||| |||| |||||||| |||||||| || || ||||| |||||   | |  | || |  | |||  |   ||| ||        ||  ||       ||||| || | |        
TGCACTTGGAGCTGCAAAGGGTCTTGCTTTTCTTCATGAGGAAGCTGAACGACCAGTAATATATAGGGATTTCAAAACTTCCAATATACTATTGGATGCAgtaagtggccaaatgttaagttattaccatctttcttttcattccttgatttgatctttatattattataacaattcag

upper sequence: GRMZM2G028037_T02 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA18G16300.1 (Glycine max), 5'ss of exon 5
TGCTCTTGGTGCTGCGAAAGGCCTCGCTTTTCTTCATGAAGAAGCTGAAAGACCAGTAATCTATCGGGACTTCAAAACCTCCAATATTCTTTTAGATGCGgtaagcaactatattgaaatgttaaaaatattcattcatacaaatgtatttg-ctaacatatttttttcag-------
||| || || ||||| || || || ||||||||||| || ||||||||| |||||||||| ||| |||| |||||||| |||||||| || || ||||| |||||   | |  || ||||  | |  || ||  ||   |    |  |||||  | | ||||| || | |        
TGCACTAGGAGCTGCAAAGGGTCTTGCTTTTCTTCACGAGGAAGCTGAACGACCAGTAATATATAGGGATTTCAAAACTTCCAATATACTATTGGATGCAgtaagtgccaaattttaaattattaccatttttcttttcattccttgatttgatttatatattattataactattcag

upper sequence: GRMZM2G028037_T02 (Zea mays), 5'ss of exon 4
lower sequence: AT3G28690.1 (Arabidopsis thaliana), 5'ss of exon 3
TGCTCTTGGTGCTGCGAAAGGCCTCGCTTTTCTTCATGAAGAAGCTGAAAGACCAGTAATCTATCGGGACTTCAAAACCTCCAATATTCTTTTAGATGCGgta--------agcaactatattgaa--atgttaaaaatattcattc-----atacaaatgtatttgctaacatatttttttcag-----
||| |||||||| || ||||| ||||| |||||||| ||||||||||| |  ||||| || ||||| || |||||||| || |||||| |  | |||| ||||        ||| |||  |    |  |  | ||   | | | |||     ||    ||  ||||   || | | |  |  ||      
TGCACTTGGTGCAGCTAAAGGTCTCGCCTTTCTTCACGAAGAAGCTGAGAAGCCAGTCATATATCGAGATTTCAAAACATCTAATATTTTACTGGATGGGgtatgtctgaaagccacttaacccgataacctcaactctgtcctttctctctatgtttataaattttagaaaaaaatgctcccattgcag

upper sequence: GRMZM2G028037_T02 (Zea mays), 5'ss of exon 4
lower sequence: Vv14s0108g00380.t01 (Vitis vinifera), 5'ss of exon 4
TGCTCTTGGTGCTGCGAAAGGCCTCGCTTTTCTTCATGAAGAAGCTGAAAGACCAGTAATCTATCGGGACTTCAAAACCTCCAATATTCTTTTAGATGCGgtaagcaact-atattgaaatgttaaaaatattc---attcatacaaatgt-------atttgctaacatatttttttcag
||| ||||||||||| || || || || ||||||||||| ||||||||||| |||||||| ||||| || || ||||| || ||||| || ||||||| |||| |  ||| | | ||   ||  || | || ||   | | || |   | |       |||||  ||  |  || || |||
TGCACTTGGTGCTGCAAAGGGTCTTGCCTTTCTTCATGAGGAAGCTGAAAGGCCAGTAATATATCGAGATTTTAAAACATCTAATATCCTGTTAGATGTGgtaggtgacttaaaatgctttgcaaatagtagtcctaacttatccttgtcttatttcaatttgtgaaacttgttcttccag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211372816|gb|FL333609.1|FL333609
EST:     CTTTTAGATGCG                         GACTATAACGCAAAACTCTCTGATTTTGGACTTGCTAAAGATGGCCCTGAG
genomic: CTTTTAGATGCGgtaagcaact ... tttttttcagGACTATAACGCAAAACTCTCTGATTTTGGACTTGCTAAAGATGGCCCTGAG
EST: gi|32938653|gb|CF043472.1|CF043472
EST:     GACCAGTAATCTATCGGGACTTCAAAACCTCCAATATTCTTTTAGATGCG                         GACCATAACGCAAAACTCTCTGATTTTGGACTTGCTAAAGATGGCCCTGAG
genomic: GACCAGTAATCTATCGGGACTTCAAAACCTCCAATATTCTTTTAGATGCGgtaagcaact ... tttttttcagGACTATAACGCAAAACTCTCTGATTTTGGACTTGCTAAAGATGGCCCTGAG
EST: gi|32938832|gb|CF043651.1|CF043651
EST:     GACCAGTAATCTATCGGGACTTCAAAACCTCCAATATTCTTTTAGATGCG                         GACTATAACGCAAAACTCTCTGATTTTGGACTTGCTAAAGATGGCCCTGAG
genomic: GACCAGTAATCTATCGGGACTTCAAAACCTCCAATATTCTTTTAGATGCGgtaagcaact ... tttttttcagGACTATAACGCAAAACTCTCTGATTTTGGACTTGCTAAAGATGGCCCTGAG
EST: gi|71595774|gb|DR906525.1|DR906525
EST:     GACCAGTAATCTATCGGGACTTCAAAACCTCCGATATTCTTTTAGATGCG                         GACTATAACGCAAAACTCTCTGATTTTGGACTTGCTAAAGATGGTCCTGAG
genomic: GACCAGTAATCTATCGGGACTTCAAAACCTCCAATATTCTTTTAGATGCGgtaagcaact ... tttttttcagGACTATAACGCAAAACTCTCTGATTTTGGACTTGCTAAAGATGGCCCTGAG
EST: gi|211273746|gb|FL307651.1|FL307651
EST:     CTTTTAGATGCG                         GACTATAACGCAAAACTCTCTGATTTTGGACTTGCTAAAGATGGCCCTGAG
genomic: CTTTTAGATGCGgtaagcaact ... tttttttcagGACTATAACGCAAAACTCTCTGATTTTGGACTTGCTAAAGATGGCCCTGAG
EST: gi|50323063|gb|CO518189.1|CO518189
EST:     GACCAGTAATCTATCGGGACTTCAAAACCTCCAATATTCTTTTAGATGCG                         GACTATAACGCAAAACTCTCTGATTTTGGACTTGCTAAAGATGGCCCTGAG
genomic: GACCAGTAATCTATCGGGACTTCAAAACCTCCAATATTCTTTTAGATGCGgtaagcaact ... tttttttcagGACTATAACGCAAAACTCTCTGATTTTGGACTTGCTAAAGATGGCCCTGAG
EST: gi|211110588|gb|FL337469.1|FL337469
EST:     CTTTTAGATGCG                         GACTATAACGCAAAACTCTCTGATTTTGGACTTGCTAAAGATGGCCCTGAG
genomic: CTTTTAGATGCGgtaagcaact ... tttttttcagGACTATAACGCAAAACTCTCTGATTTTGGACTTGCTAAAGATGGCCCTGAG
EST: gi|211053378|gb|FL364311.1|FL364311
EST:     GACCAGTAATCTATCGGGACTTCAAAACCTCCAATATTCTTTTAGATGCG                         GACTATAACGCAAAACTCTCTGATTTTGGACTTGCTAAAGATGGCCCTGAG
genomic: GACCAGTAATCTATCGGGACTTCAAAACCTCCAATATTCTTTTAGATGCGgtaagcaact ... tttttttcagGACTATAACGCAAAACTCTCTGATTTTGGACTTGCTAAAGATGGCCCTGAG
EST: gi|211474780|gb|FL319638.1|FL319638
EST:     CTTTTAGATGCG                         GACTATAACGCAAAACTCTCTGATTTTGGACTTGCTAAAGATGGCCCTGAG
genomic: CTTTTAGATGCGgtaagcaact ... tttttttcagGACTATAACGCAAAACTCTCTGATTTTGGACTTGCTAAAGATGGCCCTGAG