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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCGCAATAGCGATATTCAGCAGAATGAACATTGGGACGCTAGATGTCGGGGATTTTCTCGgtaagccatcattgcgacttccactccatgccctgggaagaataatggtgtcaccctcatcttctttctcacctctcataattgcag

Basic information

species Zea mays
transcript GRMZM2G027851_T01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G027851_T03 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os07g47100.2 (Oryza sativa), 5'ss of exon 4
GCGCAATAGCGATATTCAGCAGAATGAACATTGGGACGCTAGATGTCGGGGATTTTCTCGgtaagccatcattgcgacttccactccat-gccctgggaagaataatggtgtcaccctcatcttctttctcacctctcataattgcag-----------
  || || || ||||||||||||||||||||||| ||||| ||||| || |||||||| ||||||||||   |     |||  |   ||    |||| |  |||| ||    ||        |  ||||   |   | |   ||               
CTGCCATTGCAATATTCAGCAGAATGAACATTGGAACGCTGGATGTAGGAGATTTTCTTGgtaagccatggctatc-tttctgcatgatcatgctggcactaatattgacaccatgtgagcatcatttcctcctgttgactgttatgttcaatgtgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|74239375|gb|DT647289.1|DT647289
EST:     GATATTCAGCAGAATGAACATTGGGACGCTAGATGTCGGGGATTTTCTCG                         CTATTGGAGCTATCTTTTCTGCAACGGATTCTGTGTGCACGCTGCAG
genomic: GATATTCAGCAGAATGAACATTGGGACGCTAGATGTCGGGGATTTTCTCGgtaagccatc ... ataattgcagCTATTGGAGCTATCTTTTCTGCAACGGATTCTGTGTGCACGCTGCAG
EST: gi|50333105|gb|CO528231.1|CO528231
EST:     GATATTCAGCAGAATGAACATTGGGACGCTAGATGTCGGGGATTTTCTCG                         CTATTGGAGCTATCTTTTCTGCAACGGATTCTGTGTGCACGCTGCAG
genomic: GATATTCAGCAGAATGAACATTGGGACGCTAGATGTCGGGGATTTTCTCGgtaagccatc ... ataattgcagCTATTGGAGCTATCTTTTCTGCAACGGATTCTGTGTGCACGCTGCAG
EST: gi|78080130|gb|DV508542.1|DV508542
EST:     GATATTCAGCAGAATGAACATTGGGACGCTAGATGTCGGGGATTTTCTCG                         CTATTGGAGCTATCTTTTCTGCAACGGATTCTGTGTGCACGCTGCAG
genomic: GATATTCAGCAGAATGAACATTGGGACGCTAGATGTCGGGGATTTTCTCGgtaagccatc ... ataattgcagCTATTGGAGCTATCTTTTCTGCAACGGATTCTGTGTGCACGCTGCAG
EST: gi|74238599|gb|DT646513.1|DT646513
EST:     GATATTCAGCAGAATGAACATTGGGACGCTAGATGTCGGGGATTTTCTCG                         CTATTGGAGCTATCTTTTCTGCAACGGATTCTGTGTGCACGCTGCAG
genomic: GATATTCAGCAGAATGAACATTGGGACGCTAGATGTCGGGGATTTTCTCGgtaagccatc ... ataattgcagCTATTGGAGCTATCTTTTCTGCAACGGATTCTGTGTGCACGCTGCAG
EST: gi|93282181|gb|EB674445.1|EB674445
EST:     GATATTCAGCAGAATGAACATTGGGACGCTAGATGTCGGGGATTTTCTCG                         CTATTGGAGCTATCTTTTCTGCAACGGATTCTGTGTGCACGCTGCAG
genomic: GATATTCAGCAGAATGAACATTGGGACGCTAGATGTCGGGGATTTTCTCGgtaagccatc ... ataattgcagCTATTGGAGCTATCTTTTCTGCAACGGATTCTGTGTGCACGCTGCAG
EST: gi|78093453|gb|DV521827.1|DV521827
EST:     GATATTCAGCAGAATGAACATTGGGACGCTAGATGTCGGGGATTTTCTCG                         CTATTGGAGCTATCTTTTCTGCAACGGATTCTGTGTGCACGCTGCAG
genomic: GATATTCAGCAGAATGAACATTGGGACGCTAGATGTCGGGGATTTTCTCGgtaagccatc ... ataattgcagCTATTGGAGCTATCTTTTCTGCAACGGATTCTGTGTGCACGCTGCAG
EST: gi|78115473|gb|DV533861.1|DV533861
EST:     GATATTCAGCAGAATGAACATTGGGACGCTAGATGTCGGGGATTTTCTCG                         CTATTGGAGCTATCTTTTCTGCAACGGATTCTGTGTGCACGCTGCAG
genomic: GATATTCAGCAGAATGAACATTGGGACGCTAGATGTCGGGGATTTTCTCGgtaagccatc ... ataattgcagCTATTGGAGCTATCTTTTCTGCAACGGATTCTGTGTGCACGCTGCAG
EST: gi|76936699|gb|DV174843.1|DV174843
EST:     GATATTCAGCAGAATGAACATTGGGACGCTAGATGTCGGGGATTTTCTCG                         CTATTGGAGCTATCTTTTCTGCAACGGATTCTGTGTGCACGCTGCAG
genomic: GATATTCAGCAGAATGAACATTGGGACGCTAGATGTCGGGGATTTTCTCGgtaagccatc ... ataattgcagCTATTGGAGCTATCTTTTCTGCAACGGATTCTGTGTGCACGCTGCAG