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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCAACTCAGTACGGGAAGAGCTAATCTTCCTGCACTACAGCCACCGGGATCAGTTGATGGTTTTGAAATGTTCCGGTTGCTGTCACCGGCAATTGTTCAGgtgaggaaagcattcacttgaccgcattctgaaacacactacacctcaagaaatggggaaaaaaagaagaaacactgaagcacaccaatgccatgagcag...

Basic information

species Zea mays
transcript GRMZM2G027075_T05
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G027075_T05 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os05g10770.1 (Oryza sativa), 5'ss of exon 11
GCAACTCAGTACGGGAAGAGCTAATCTTCCTGCACTACAGCCACCGGGATCAGTTGATGGTTTTGAAATGTTCCGGTTGCTGTCACCGGCAATTGTTCAGgtgaggaaagcat-tcacttgaccgcattctgaaacacactacacctcaagaaatggggaaaaaaagaagaaacactgaagcacaccaatgccatgagcag
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GCAACTTAATATGGGAAAATCAAATCTTCCTACATTGCAGCCTCCAGGATCAGTTGATGGTCTTGAAATGTTTGGTTTATTATCACCACCAATAGTTCAGgtgagacattaatgtctggtatcctcatgattgatctc-taaggcctgtattggcattgcgaggccctttttataatagtgatttatgcacttataagtga
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16378845|gb|BI992636.1|BI992636
EST:     GTTTTGAAATGTTCCGGTTGCTGTCACCGGCAATTGTTCAG                         GCAATCGAGGCACGGGATAGAGATCGCATCTGCACAGAGTACTGGAGATCC
genomic: GTTTTGAAATGTTCCGGTTGCTGTCACCGGCAATTGTTCAGgtgaggaaag ... ttcatcccagGCAATCGAGGCACGGGATAGAGATCGCATCTGCACAGAGTACTGGAGATCC
EST: gi|71442862|gb|DR823912.1|DR823912
EST:     CAGTTGATGGTTTTGAAATGTTCCGGTTGCTGTCACCGGCAATTGTTCAG                         GCAATCGAGGCACGGGATAGAGATCGCATCTGCACAGAGTACTGGAGATCC
genomic: CAGTTGATGGTTTTGAAATGTTCCGGTTGCTGTCACCGGCAATTGTTCAGgtgaggaaag ... ttcatcccagGCAATCGAGGCACGGGATAGAGATCGCATCTGCACAGAGTACTGGAGATCC
EST: gi|74239884|gb|DT647798.1|DT647798
EST:     CAGTTGATGGTTTTGAAATGTTCCGGTTGCTGTCACCGGCAATTGTTCAN                         GCAATCGAGGCACGGGATAGAGATCGCATCTGCACAGAGTACTGGAGATCC
genomic: CAGTTGATGGTTTTGAAATGTTCCGGTTGCTGTCACCGGCAATTGTTCAGgtgaggaaag ... ttcatcccagGCAATCGAGGCACGGGATAGAGATCGCATCTGCACAGAGTACTGGAGATCC