1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
CTAAGAAAACCTTGGAGGGTGCTTTAGCTGGCCTAGCTGGCTGTGTGCTGACCACTGTGCTGCTGTCAACTGCCTTACGCTGGCCAAGATCACTGTTGAGgtgtgaattctggaatttctactattattgtgttagcaatggaacagtaccttcctctagggaagtgctatctcgcacattaaagagaaaaaaccaaaac...
species | Zea mays |
transcript | GRMZM2G027043_T01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: ACCACTGTGCTGCTGTCAACTGCCTTACGCTGGCCAAGATCACTGTTGAG TGCCACAGCTTATGGAATCCTGATCTTTCTGGGTTCATTGTTTGGGGATCTEST: gi|91056794|gb|EB167212.1|EB167212
genomic: ACCACTGTGCTGCTGTCAACTGCCTTACGCTGGCCAAGATCACTGTTGAGgtgtgaattc ... ttgatatcagTGCCACAGCTTATGGAATCCTGATCTTTCTGGGTTCATTGTTTGGGGATCT
EST: ACCACTGTGCTGCTGTCAACTGCCTTACGCTGGCCAAGATCACTGTTGAG TGCCACAGCTTATGGAATCCTGATCTTTCTGGGTTCATTGTTTGGGGATCTEST: gi|91056795|gb|EB167213.1|EB167213
genomic: ACCACTGTGCTGCTGTCAACTGCCTTACGCTGGCCAAGATCACTGTTGAGgtgtgaattc ... ttgatatcagTGCCACAGCTTATGGAATCCTGATCTTTCTGGGTTCATTGTTTGGGGATCT
EST: ACCACTGTGCTGCTGTCAACTGCCTTACGCTGGCCAAGATCACTGTTGAG TGCCACAGCTTATGGAATCCTGATCTTTCTGGGTTCATTGTTTGGGGATCTEST: gi|89759341|gb|DY688206.1|DY688206
genomic: ACCACTGTGCTGCTGTCAACTGCCTTACGCTGGCCAAGATCACTGTTGAGgtgtgaattc ... ttgatatcagTGCCACAGCTTATGGAATCCTGATCTTTCTGGGTTCATTGTTTGGGGATCT
EST: ACCACTGTGCTGCTGTCAACTGCCTTACGCTGGCCAAGATCACTGTTGAG TGCCACAGCTTATGGAATCCTGATCTTTCTGGGTTCATTGTTTGGGGATCTEST: gi|71435126|gb|DR816176.1|DR816176
genomic: ACCACTGTGCTGCTGTCAACTGCCTTACGCTGGCCAAGATCACTGTTGAGgtgtgaattc ... ttgatatcagTGCCACAGCTTATGGAATCCTGATCTTTCTGGGTTCATTGTTTGGGGATCT
EST: ACCACTGTGCTGCTGTCAACTGCCTTACGCTGGCCAAGATCACTGTTGAG TGCCACAGCTTATGGAATCCTGATCTTTCTGGGTTCATTGTTTGGGGATCTEST: gi|89247373|gb|DY619159.1|DY619159
genomic: ACCACTGTGCTGCTGTCAACTGCCTTACGCTGGCCAAGATCACTGTTGAGgtgtgaattc ... ttgatatcagTGCCACAGCTTATGGAATCCTGATCTTTCTGGGTTCATTGTTTGGGGATCT
EST: CTTACGCTGGCCAAGATCACTGTTGAG TGCCACAGCTTATGGAATCCTGATCTTTCTGGGTTCATTGTTTGGGGATCTEST: gi|60348161|gb|DN215134.1|DN215134
genomic: CTTACGCTGGCCAAGATCACTGTTGAGgtgtgaattc ... ttgatatcagTGCCACAGCTTATGGAATCCTGATCTTTCTGGGTTCATTGTTTGGGGATCT
EST: ACCACTGTGCTGCTGTCAACTGCCTTACGCTGGCCAAGATCACTGTTGAG TGCCACAGCTTATGGAATCCTGATCTTTCTGGGTTCATTGTTTGGGGATCT
genomic: ACCACTGTGCTGCTGTCAACTGCCTTACGCTGGCCAAGATCACTGTTGAGgtgtgaattc ... ttgatatcagTGCCACAGCTTATGGAATCCTGATCTTTCTGGGTTCATTGTTTGGGGATCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTAAGAAAACCTTGGAGGGTGCTTTAGCTGGCCTAGCTGGCTGTGTGCTGACCACTGTGCTGCTGTCAACTGCCTTACGCTGGCCAAGATCACTGTTGAGgtgtgaattctggaatttctactattattgtgttagcaatggaacagtaccttcctctagggaagtgctatctcgcacattaaagagaaaaaaccaaaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccttcctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -agaaaaaa