1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
TCCTCGCCATGATTACTATGCTTTAACCGCTAGTGGACAACAAGAAGTTCCACACCTGTTCCGCAGATGGATTACTCCACAGGAACCACCCAGGAGTAATgtggtatgctgcatttttcatactcatagttgtcaagtaatttgcagagtggtggcatgctgaatctgaattttgaataaccag
species | Zea mays |
transcript | GRMZM2G026900_T02 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: CACACCTGTTCCGCAGATGGATTACTCCACAGGAACCACCCAGGAGTAAT GTGGTACTTACTGTTGGTGCACTACACCAGGCTGATTCTGCTGCGCTACGGEST: gi|76014611|gb|DT941781.1|DT941781
genomic: CACACCTGTTCCGCAGATGGATTACTCCACAGGAACCACCCAGGAGTAATgtggtatgct ... gaataaccagGT---ACTTACTGTTGGTGCACTACACCAGGCTGATTCTGCTGCGCTACGG
EST: CACACCTGTTCCGCAGATGGATTACTCCACAGGAACCACCCAGGAGTAAT GTACTTACTGTTGGTGCACTACACCAGGCTGATTCTGCTGCGCTACGGCTTEST: gi|148932641|gb|EC876549.2|EC876549
genomic: CACACCTGTTCCGCAGATGGATTACTCCACAGGAACCACCCAGGAGTAATgtggtatgct ... gaataaccagGTACTTACTGTTGGTGCACTACACCAGGCTGATTCTGCTGCGCTACGGCTT
EST: CACACCTGTTCCGCAGATGGATTACTCCACAGGAACCACCCAGGAGTAAT GTGGTACTTACTGTTGGTGCACTACACCAGGCEST: gi|149059442|gb|EE156927.2|EE156927
genomic: CACACCTGTTCCGCAGATGGATTACTCCACAGGAACCACCCAGGAGTAATgtggtatgct ... gaataaccagGT---ACTTACTGTTGGTGCACTACACCAGGC
EST: CACACCTGTTCCGCAGATGGATTACTCCACAGGAACCACCCAGGAGTAAT GTGGTACTTACTGTTGGTGCACTACACCAGGCTGATTCTGCTGCGCTACGGEST: gi|71329061|gb|DR801238.1|DR801238
genomic: CACACCTGTTCCGCAGATGGATTACTCCACAGGAACCACCCAGGAGTAATgtggtatgct ... gaataaccagGT---ACTTACTGTTGGTGCACTACACCAGGCTGATTCTGCTGCGCTACGG
EST: CACACCTGTTCCGCAGATGGATTACTCCACAGGAACCACCCAGGAGTAAT GTGGTACTTACTGTTGGTGCACTACACCAGGCTGATTCTGCTGCGCTACGGEST: gi|148942515|gb|EC887530.2|EC887530
genomic: CACACCTGTTCCGCAGATGGATTACTCCACAGGAACCACCCAGGAGTAATgtggtatgct ... gaataaccagGT---ACTTACTGTTGGTGCACTACACCAGGCTGATTCTGCTGCGCTACGG
EST: CACACCTGTTCCGCAGATGGATTACTCCACAGGAACCACCCAGGAGTATT GTGGTACTTACTGTTGGTGCACTACACCAGGCTGATTCTGCT
genomic: CACACCTGTTCCGCAGATGGATTACTCCACAGGAACCACCCAGGAGTAATgtggtatgct ... gaataaccagGT---ACTTACTGTTGGTGCACTACACCAGGCTGATTCTGCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCCTCGCCATGATTACTATGCTTTAACCGCTAGTGGACAACAAGAAGTTCCACACCTGTTCCGCAGATGGATTACTCCACAGGAACCACCCAGGAGTAATgtggtatgctgcatttttcatactcatagttgtcaagtaatttgcagagtggtggcatgctgaatctgaattttgaataaccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA