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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGCCGTGAAGCCTGTGGGCTATGTATCCGAGGCCTCTAGGGAGTCTGGCCTCGTCATCATTGACAACAGCCTTGCTCTTGTAGAGACCCTTATGGACGTGgtttgtatcctgttcatgcatgtttttgcaatttcgcttggtaccattgttgctccatgacttttttttttttgctgatcttcctctccatccatgtcgcag

Basic information

species Zea mays
transcript GRMZM2G026643_T01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G026643_T01 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os02g45250.1 (Oryza sativa), 5'ss of exon 4
CGCCGTGAAGCCTGTGGGCTATGTATCCGAGGCCTCTAGGGAGTCTGGCCTCGTCATCATTGACAACAGCCTTGCTCTTGTAGAGACCCTTATGGACGTGgtttgtatcctgttcatgcatgtttt-tgcaatttcgcttggtaccattgttgctccatgacttttttttttttgctgatcttcctctccatccatgtcgcag
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TGGCATGAAGCCTGCCGGCTACGTCTCTGAGGCCTCGAGGGAATCCGGTCTAGTCATCATCGACAACAGCCTTGCCCTTGTAGAGACCCTCATGGATGAGgtttgggctaatgtcctccacatttcgcaccgtatacttatgttccgttccaatcctataa----tgtactaatgttggtgttact-tgcattcatttcacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|149072468|gb|EE160744.2|EE160744
EST:     TCGTCATCATTGACAACAGCCTTGCTCTTGTAGAGACCCTTATGGACGTG                         AGACGGTGGTCTGATATGTTCTCGTGCATGATTGCTAAGGCCACAGTCCTA
genomic: TCGTCATCATTGACAACAGCCTTGCTCTTGTAGAGACCCTTATGGACGTGgtttgtatcc ... catgtcgcagAGACGGTGGTCTGATATGTTCTCGTGCATGATTGCTAAGGCCACAGTCCTA