1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
TGACTTACTAGATCTCCGCAAACTGCTCGGTCAGAAGAGGAAAGCTACTCTTGAATCATTATCTGAAGATGACTGTTTGCGTGCTATAAGCAAGCTAAAAgtaagactatgaagctttaatgatccatttatatttatcttggaactttggaatcgcatgtatattgtttctatgagtctgtatctcatctgctccttcctttgtggattcgcag
species | Zea mays |
transcript | GRMZM2G026311_T02 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TTGAATCATTATCTGAAGATGACTGTTTGCGTGCTATAAGCAAGCTAAAA GTCCTTGGTAGTGGTTTTGAAGTAATTTCTGTTGGGAGGAGAAAGCTTGTGEST: gi|71297620|gb|DR784761.1|DR784761
genomic: TTGAATCATTATCTGAAGATGACTGTTTGCGTGCTATAAGCAAGCTAAAAgtaagactat ... ggattcgcagGTCCTTGGTAGTGGTTTTGAAGTAATTTCTGTTGGGAGGAGAAAGCTTGTG
EST: TTGAATCATTATCTGAAGATGACTGTTTGCGTGCTATAAGCAAGCTAAAA GTCCTTGGTAGTGGTTTTGAAGTAATTTCTGTTGGGAGGAGAAAGCTTGTGEST: gi|76021476|gb|DT948646.1|DT948646
genomic: TTGAATCATTATCTGAAGATGACTGTTTGCGTGCTATAAGCAAGCTAAAAgtaagactat ... ggattcgcagGTCCTTGGTAGTGGTTTTGAAGTAATTTCTGTTGGGAGGAGAAAGCTTGTG
EST: TTGAATCATTATCTGAAGATGACTGTTTGCGTGCTATAAGCAAGCTAAAA GTCCTTGGTAGTGGTTTTGAAGTAATTTCTGTTGGGAGGAGAAAGCTTGTGEST: gi|78088647|gb|DV517040.1|DV517040
genomic: TTGAATCATTATCTGAAGATGACTGTTTGCGTGCTATAAGCAAGCTAAAAgtaagactat ... ggattcgcagGTCCTTGGTAGTGGTTTTGAAGTAATTTCTGTTGGGAGGAGAAAGCTTGTG
EST: TTGAATCATTATCTGAAGATGACTGTTTGCGTGCTATAAGCAAGCTAAAA GTCCTTGGTAGTGGTTTTGAAGTAATTTCTGTTGGGAGGAGAAAGCTTGTGEST: gi|87155520|gb|DY400309.1|DY400309
genomic: TTGAATCATTATCTGAAGATGACTGTTTGCGTGCTATAAGCAAGCTAAAAgtaagactat ... ggattcgcagGTCCTTGGTAGTGGTTTTGAAGTAATTTCTGTTGGGAGGAGAAAGCTTGTG
EST: TTGAATCATTATCTGAAGATGACTGTTTGCGTGCTATAAGCAAGCTAAAA GTCCTTGGTAGTGGTTTTGAAGTAATTTCTGTTGGGAGGAGAAAGCTTGTGEST: gi|78081791|gb|DV510203.1|DV510203
genomic: TTGAATCATTATCTGAAGATGACTGTTTGCGTGCTATAAGCAAGCTAAAAgtaagactat ... ggattcgcagGTCCTTGGTAGTGGTTTTGAAGTAATTTCTGTTGGGAGGAGAAAGCTTGTG
EST: TTGAATCATTATCTGAAGATGACTGTTTGCGTGCTATAAGCAAGCTAAAA GTCCTTGGTAGTGGTTTTGAAGTAATTTCTGTTGGGAGGAGAAAGCTTGTGEST: gi|78088648|gb|DV517041.1|DV517041
genomic: TTGAATCATTATCTGAAGATGACTGTTTGCGTGCTATAAGCAAGCTAAAAgtaagactat ... ggattcgcagGTCCTTGGTAGTGGTTTTGAAGTAATTTCTGTTGGGAGGAGAAAGCTTGTG
EST: TTGAATCATTATCTGAAGATGACTGTTTGCGTGCTATAAGCAAGCTAAAA GTCCTTGGTAGTGGTTTTGAAGTAATTTCTGTTGGGAGGAGAAAGCTTGTGEST: gi|148962831|gb|EE013751.2|EE013751
genomic: TTGAATCATTATCTGAAGATGACTGTTTGCGTGCTATAAGCAAGCTAAAAgtaagactat ... ggattcgcagGTCCTTGGTAGTGGTTTTGAAGTAATTTCTGTTGGGAGGAGAAAGCTTGTG
EST: TTGAATCATTATCTGAAGATGACTGTTTGCGTGCTATAAGCAAGCTAAAA GTCCTTGGTAGTGGTTTTGAAGTAATTTCTGTTGGGAGGAGAAAGCTTGTGEST: gi|78087906|gb|DV516299.1|DV516299
genomic: TTGAATCATTATCTGAAGATGACTGTTTGCGTGCTATAAGCAAGCTAAAAgtaagactat ... ggattcgcagGTCCTTGGTAGTGGTTTTGAAGTAATTTCTGTTGGGAGGAGAAAGCTTGTG
EST: TTGAATCATTATCTGAAGATGACTGTTTGCGTGCTATAAGCAAGCTAAAA GTCCTTGGTAGTGGTTTTGAAGTAATTTCTGTTGGGAGGAGAAAGCTTGTGEST: gi|32846677|gb|CD986358.1|CD986358
genomic: TTGAATCATTATCTGAAGATGACTGTTTGCGTGCTATAAGCAAGCTAAAAgtaagactat ... ggattcgcagGTCCTTGGTAGTGGTTTTGAAGTAATTTCTGTTGGGAGGAGAAAGCTTGTG
EST: TTGAATCATTATCTGAAGATGACTGTTTGCGTGCTATAAGCAAGCTAAAA GTCCTTGGTAGTGGTTTTGAAGTAATTTCTGTTGGGAGGAGAAAGCTTGTGEST: gi|5018429|gb|AI714622.1|AI714622
genomic: TTGAATCATTATCTGAAGATGACTGTTTGCGTGCTATAAGCAAGCTAAAAgtaagactat ... ggattcgcagGTCCTTGGTAGTGGTTTTGAAGTAATTTCTGTTGGGAGGAGAAAGCTTGTG
EST: TTGAATCATTATCTGAAGATGACTGTTTGCGTGCTATAAGCAAGCTAAAA GTCCTTGGTAGTGGTTTTGAAGTAATTTCTGTTGGGAGGAGAAAGCTTGTGEST: gi|101396301|gb|EB820076.1|EB820076
genomic: TTGAATCATTATCTGAAGATGACTGTTTGCGTGCTATAAGCAAGCTAAAAgtaagactat ... ggattcgcagGTCCTTGGTAGTGGTTTTGAAGTAATTTCTGTTGGGAGGAGAAAGCTTGTG
EST: CATTATCTGAAGATGACTGTTTGCGTGCTATAAGCAAGCTAAAA GTCCTTGGTAGTGGTTTTGAAGTAATTTCTGTTGGGAGGAGAAAGCTTGTGEST: gi|211125818|gb|FL435219.1|FL435219
genomic: CATTATCTGAAGATGACTGTTTGCGTGCTATAAGCAAGCTAAAAgtaagactat ... ggattcgcagGTCCTTGGTAGTGGTTTTGAAGTAATTTCTGTTGGGAGGAGAAAGCTTGTG
EST: TTGAATCATTATCTGAAGATGACTGTTTGCGTGCTATAAGCAAGCTAAAA GTCCTTGGTAGTGGTTTTGAAGTAATTTCTGTTGGGAGGAGAAAGCTTGTGEST: gi|32792491|gb|CD944727.1|CD944727
genomic: TTGAATCATTATCTGAAGATGACTGTTTGCGTGCTATAAGCAAGCTAAAAgtaagactat ... ggattcgcagGTCCTTGGTAGTGGTTTTGAAGTAATTTCTGTTGGGAGGAGAAAGCTTGTG
EST: TTGAATCATTATCTGAAGATGACTGTTTGCGTGCTATAAGCAAGCTAAAA AEST: gi|32792491|gb|CD944727.1|CD944727
genomic: TTGAATCATTATCTGAAGATGACTGTTTGCGTGCTATAAGCAAGCTAAAAgtaagactat ... ggattcgcag-
EST: TTGAATCATTATCTGAAGATGACTGTTTGCGTGCTATAAGCAAGCTAAAA AEST: gi|71330916|gb|DR802256.1|DR802256
genomic: TTGAATCATTATCTGAAGATGACTGTTTGCGTGCTATAAGCAAGCTAAAAgtaagactat ... ggattcgcag-
EST: TTGAATCATTATCTGAAGATGACTGTTTGCGTGCTATAAGCAAGCTAAAA GTCCTTGGTAGTGGTTTTGAAGTAATTTCTGTTGGGAGGAGAAAGCTTGTGEST: gi|71330918|gb|DR802257.1|DR802257
genomic: TTGAATCATTATCTGAAGATGACTGTTTGCGTGCTATAAGCAAGCTAAAAgtaagactat ... ggattcgcagGTCCTTGGTAGTGGTTTTGAAGTAATTTCTGTTGGGAGGAGAAAGCTTGTG
EST: TTGAATCATTATCTGAAGATGACTGTTTGCGTGCTATAAGCAAGCTAAAA GTCCTTGGTAGTGGTTTTGAAEST: gi|76021477|gb|DT948647.1|DT948647
genomic: TTGAATCATTATCTGAAGATGACTGTTTGCGTGCTATAAGCAAGCTAAAAgtaagactat ... ggattcgcagGTCCTTGGTAGTGGTTTTGAA
EST: TTGAATCATTATCTGAAGATGACTGTTTGCGTGCTATAAGCAAGCTAAAA GTCCTTGGTAGTGGTTTTGAAGTAATTTCTGTTGGGAGGAGAAAGCTTGTGEST: gi|71297617|gb|DR784760.1|DR784760
genomic: TTGAATCATTATCTGAAGATGACTGTTTGCGTGCTATAAGCAAGCTAAAAgtaagactat ... ggattcgcagGTCCTTGGTAGTGGTTTTGAAGTAATTTCTGTTGGGAGGAGAAAGCTTGTG
EST: TTGAATCATTATCTGAAGATGACTGTTTGCGTGCTATAAGCAAGCTAAAA GTCCTTGGTAGTGGTTTTGAAGTAATTTCTGTTGGGAGGAGAAAGCTTGTGEST: gi|76013036|gb|DT940206.1|DT940206
genomic: TTGAATCATTATCTGAAGATGACTGTTTGCGTGCTATAAGCAAGCTAAAAgtaagactat ... ggattcgcagGTCCTTGGTAGTGGTTTTGAAGTAATTTCTGTTGGGAGGAGAAAGCTTGTG
EST: TGAATCATTATCTGAAGATGACTGTTTGCGTGCTATAAAGCA-GCTAAAA GTCCTTGGTAGTGGTTTTGAAGTAATTTCTGTTGGGAGGAGAAAGCTTGTGEST: gi|93011965|gb|EB637485.1|EB637485
genomic: TGAATCATTATCTGAAGATGACTGTTTGCGTGCTATAA-GCAAGCTAAAAgtaagactat ... ggattcgcagGTCCTTGGTAGTGGTTTTGAAGTAATTTCTGTTGGGAGGAGAAAGCTTGTG
EST: TTGAATCATTATCTGAAGATGACTGTTTGCGTGCTATAAGCAAGCTAAAA GTCCTTGGTAGTGGTTTTGAAGTAATTTCTGTTGGGAGGAGAAAGCTTGTGEST: gi|21809751|gb|BQ668069.1|BQ668069
genomic: TTGAATCATTATCTGAAGATGACTGTTTGCGTGCTATAAGCAAGCTAAAAgtaagactat ... ggattcgcagGTCCTTGGTAGTGGTTTTGAAGTAATTTCTGTTGGGAGGAGAAAGCTTGTG
EST: TTGAATCATTATCTGAAGATGGCTGTTTGCGTGCTATAAGCAAGCTAAAA GTCCTTGGTAGTGGTTTTGAAGTAATTTCTGTTGGGAGGAGAAAGCTTGTGEST: gi|78026633|gb|DV495020.1|DV495020
genomic: TTGAATCATTATCTGAAGATGACTGTTTGCGTGCTATAAGCAAGCTAAAAgtaagactat ... ggattcgcagGTCCTTGGTAGTGGTTTTGAAGTAATTTCTGTTGGGAGGAGAAAGCTTGTG
EST: TTGAATCATTATCTGAAGATGACTGTTTGCGTGCTATAAGCAAGCTAAAA GTCCTTGGTAGTGGTTTTGAAGTAATTTCTGTTGGGAGGAGAAAGCTTGTG
genomic: TTGAATCATTATCTGAAGATGACTGTTTGCGTGCTATAAGCAAGCTAAAAgtaagactat ... ggattcgcagGTCCTTGGTAGTGGTTTTGAAGTAATTTCTGTTGGGAGGAGAAAGCTTGTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGACTTACTAGATCTCCGCAAACTGCTCGGTCAGAAGAGGAAAGCTACTCTTGAATCATTATCTGAAGATGACTGTTTGCGTGCTATAAGCAAGCTAAAAgtaagactatgaagctttaatgatccatttatatttatcttggaactttggaatcgcatgtatattgtttctatgagtctgtatctcatctgctccttcctttgtggattcgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT