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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTTTGGATTTTCTGATAAGCCTCAACCAAAATATGGTTTTGACTATACACTTGATGgtaaaatgattgtcacacatactgattattctgtttcacccaacaatgcattgtcaataacataataacttgagctcctatgtttcag

Basic information

species Zea mays
transcript GRMZM2G025659_T02
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G025659_T02 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os01g69060.1 (Oryza sativa), 5'ss of exon 7
GGTTTGGATTTTCTGATAAGCCTCAACCAAAATATGGTTTTGACTATACACTTGATGgtaaaatgattgtcacacatactgattattctgtttcacccaacaatgcattgtcaataacataataacttgagctcctatgt----ttcag
| ||||| || || ||||||||||||||  | ||||||||||||||||| |||||||||||||| ||         |||  | ||| |||| || || ||  | |  |  ||||  | |||||||| | | || |||| |    | |||
GTTTTGGGTTCTCAGATAAGCCTCAACCCGATTATGGTTTTGACTATACTCTTGATGgtaaaattatc--------tacatagtatcctgtgtctccaaaacaagtgtattcaacta-ataataacataaactactatttcctttccag

upper sequence: GRMZM2G025659_T02 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA03G23870.1 (Glycine max), 5'ss of exon 7
GGTTTGGATTTTCTGATAAGCCTCAACCAAAATATGGTTTTGACTATACACTTGATGgtaaaatgatt-----gtcacaca---tactgattatt--------ctgtttcacccaacaatgcattgtcaataacataataacttgag-ctcctatgtttcag
| ||||| |||||||| ||||||||||| | |||||| |||||||| ||||| ||||||||     ||     | || | |   | ||| |||||         |||||   | || ||||   || ||| |   |  |  |||  | || ||   || |||
GATTTGGGTTTTCTGACAAGCCTCAACCCAGATATGGGTTTGACTACACACTGGATGgtaattgctttagtgggccaaataacttgctgtttattgggaattcttgttttgacaaataatgg--tggcaaaagtgtgttttcttttgtcttcttccttgcag

upper sequence: GRMZM2G025659_T02 (Zea mays), 5'ss of exon 4
lower sequence: Vv07s0151g00860.t01 (Vitis vinifera), 5'ss of exon 7
GGTTTGGATTTTCTGATAAGCCTCAACCAAAATATGGTTTTGACTATACACTTGATGgtaaaatgattgtcacacatactgattattctgtttcacccaacaatgcattgtcaataacataataacttgagctcct---atgtttcag--------------------------------------
| ||||||||||| |||||||||||||| ||||||||||||||||| ||  | ||||||||  |   | ||| || || ||||   |   |   | | |   ||    | |  |||  |  |  | |  |         | | || |                                       
GCTTTGGATTTTCAGATAAGCCTCAACCCAAATATGGTTTTGACTACACCTTGGATGgtaatttctgtatcaaac-taatgatggctagataaaaactatagatagtctttatatattaatacgagtcaaaaaaggggaaagattgaataattttttaataatagatctttgctaatggttcacag