1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
TTAGAAATCATCCATCTGTTGATCTGAAGATTGTGTTCCTTCCCCTGTTGGCCTTTGAAGCAATAATCCTTATTGACAATTTTAGgtaatcaattttagctatcaccttttttcctgtggatttttagattgtgtcattgcaagttatttttccccaactatgacaaagcattgcacataatgac...
species | Zea mays |
transcript | GRMZM2G024690_T02 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: CTTCCCCTGTTGGCCTTTTGAAACAATAATCCCTTATTGACAATTTTTAG AATGTGTAGAGCTTTTATGCEST: gi|149070957|gb|EE159363.2|EE159363
genomic: CTTCCCCTGTTGGCCTTT-GAAGCAATAATCC-TTATTGACAATTTT-AGgtaatcaatt ... tatttgtcagAATGTGTAGAGCTTTAATGC
EST: TTCCTTCCCCTGTTGGCCTTTGAAGCAATAATCCTTATTGACAATTTTAG AATGTGTAGAGCTTTAATGCCTGGGGATGAAGAAAGCATGAGTGATGAAGCEST: gi|88756990|gb|DY541131.1|DY541131
genomic: TTCCTTCCCCTGTTGGCCTTTGAAGCAATAATCCTTATTGACAATTTTAGgtaatcaatt ... tatttgtcagAATGTGTAGAGCTTTAATGCCTGGGGATGAAGAAAGCATGAGTGATGAAGC
EST: TTCCTTCCCCTGTTGGCCTTTGAAGCAATAATCCTTATTGACAATTTTAG AATGTGTAGAGCTTTAATGCCTGGGGATGAAGAAAGCATGAGTGATGAAGCEST: gi|211453584|gb|FL021068.1|FL021068
genomic: TTCCTTCCCCTGTTGGCCTTTGAAGCAATAATCCTTATTGACAATTTTAGgtaatcaatt ... tatttgtcagAATGTGTAGAGCTTTAATGCCTGGGGATGAAGAAAGCATGAGTGATGAAGC
EST: TTCCTTCCCCTGTTGGCCTTTGAAGCAATAATCCTTATTGACAATTTTAG AATGTGTAGAGCTTTAATGCCTGGEST: gi|148931986|gb|EC875260.2|EC875260
genomic: TTCCTTCCCCTGTTGGCCTTTGAAGCAATAATCCTTATTGACAATTTTAGgtaatcaatt ... tatttgtcagAATGTGTAGAGCTTTAATGCCTGG
EST: TTCCTTCCCCTGTTGGCCTTTGAAGCAATAATCCTTATTGACAATTTTAG AATGTGTAGAGCTTTAATGCCTGGGGATGAAGAAAGCATGAGTGATGAAGCEST: gi|91870315|gb|EB400812.1|EB400812
genomic: TTCCTTCCCCTGTTGGCCTTTGAAGCAATAATCCTTATTGACAATTTTAGgtaatcaatt ... tatttgtcagAATGTGTAGAGCTTTAATGCCTGGGGATGAAGAAAGCATGAGTGATGAAGC
EST: TTCCTTCCCCTGTTGGCCTTTGAAGCAATAATCCTTATTGACAATTTTAG AATGTGTAGAGCTTTAATGCCTGGGGATGAAGAAAGCATGAGTGATGAAGCEST: gi|78117592|gb|DV535979.1|DV535979
genomic: TTCCTTCCCCTGTTGGCCTTTGAAGCAATAATCCTTATTGACAATTTTAGgtaatcaatt ... tatttgtcagAATGTGTAGAGCTTTAATGCCTGGGGATGAAGAAAGCATGAGTGATGAAGC
EST: TTCCTTCCCCTGTTGGCCTTTGAAGCAATAATCCTTATTGACAATTTTAG AATGTGTAGAGCTTTAATGCCTGGGGATGAAGAAAGCATGAGTGATGAAGCEST: gi|149104180|gb|EE289614.2|EE289614
genomic: TTCCTTCCCCTGTTGGCCTTTGAAGCAATAATCCTTATTGACAATTTTAGgtaatcaatt ... tatttgtcagAATGTGTAGAGCTTTAATGCCTGGGGATGAAGAAAGCATGAGTGATGAAGC
EST: TTCCTTCCCCTGTTGGCCTTTGAAGCAATAATCCTTATTGACAATTTTAG AATGTGTAGAGCTTTAATGCCTGGGGATGAAGAAAGCATGAGTGATGAAGCEST: gi|211453580|gb|FL021064.1|FL021064
genomic: TTCCTTCCCCTGTTGGCCTTTGAAGCAATAATCCTTATTGACAATTTTAGgtaatcaatt ... tatttgtcagAATGTGTAGAGCTTTAATGCCTGGGGATGAAGAAAGCATGAGTGATGAAGC
EST: TCCTTCCCCTGTTGGCCTTTGAAGCAATAATCCTTATTGACAATTTTTAG AATGTGTAGAGCTTTAATGCCTGGGGATGAAGAAAGCATGAGTGATGAAGEST: gi|211453582|gb|FL021066.1|FL021066
genomic: TCCTTCCCCTGTTGGCCTTTGAAGCAATAATCCTTATTGACAATTTT-AGgtaatcaatt ... tatttgtcagAATGTGTAGAGCTTTAATGCCTGGGGATGAAGAAAGCATGAGTGATGAAG
EST: TTCCTTCCCCTGTTGGCCTTTGAAGCAATAATCCTTATTGACAATTTTAG AATGTGTAGAGCTTTAATGCCTGGGGATGAAGAAAGCATGAGTGATGAAGC
genomic: TTCCTTCCCCTGTTGGCCTTTGAAGCAATAATCCTTATTGACAATTTTAGgtaatcaatt ... tatttgtcagAATGTGTAGAGCTTTAATGCCTGGGGATGAAGAAAGCATGAGTGATGAAGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTAGAAATCATCCATCTGTTGATCTGAAGATTGTGTTCCTTCCCCTGTTGGCCTTTGAAGCAATAATCCTTATTGACAATTTTAGgtaatcaattttagctatcaccttttttcctgtggatttttagattgtgtcattgcaagttatttttccccaactatgacaaagcattgcacataatgac
- - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA