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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACAGTGAGCTACATGGCTGAGCGCATTGTAGGTCAAGGTTCTTTTGGGATCGTCTTCCAGgttatttgcaataacttgtgactgactttgatatgtactattatgtagccgcctgtggtgttgctttccacggcgctgcacatgttttagatcttcatatcttgcgtgctataaatcacctttcttaatcagatgccatttcacctgttcatag

Basic information

species Zea mays
transcript GRMZM2G024151_T02
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G024151_T01 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os01g14860.1 (Oryza sativa), 5'ss of exon 4
ACAGTGAGCTACATGGCTGAGCGCATTGTAGGTCAAGGTTCTTTTGGGATCGTCTTCCAGgttatttgcaataacttgtgactg------actttgatatgtacta-----ttatgtagccgcctgtggtgttgctttccacggcgctgcacatgttttagatcttcatatcttgcgtgctata-aatcacctt-tcttaatcagatgccatttcacctgttcatag---------------------------------
||||| ||||||||||||||||| |||||||| |||||||| |||||||| ||||||||||||| |||||| | |||  |  |       | ||    |   || |      || |||||   || |    |   |  |          |   | |||| |    |   |  |||  || || |  || ||||| ||||  | ||||| | |      | |||||                                   
ACAGTTAGCTACATGGCTGAGCGTATTGTAGGGCAAGGTTCATTTGGGATTGTCTTCCAGgttagttgcaacatctttgggttttcatatatttcaccaatcaccaggaagctaagtagctaact-taacatcattaactctactagcaccactttttttgtatgtagcaaattgt-tgatacacgataaccttctcttgttaagatgtcctaaatgttcttcatgtctgtaatagtgatatcattttgaccattttcag

upper sequence: GRMZM2G024151_T01 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os01g14860.4 (Oryza sativa), 5'ss of exon 4
ACAGTGAGCTACATGGCTGAGCGCATTGTAGGTCAAGGTTCTTTTGGGATCGTCTTCCAGgttatttgcaataacttgtgactg------actttgatatgtacta-----ttatgtagccgcctgtggtgttgctttccacggcgctgcacatgttttagatcttcatatcttgcgtgctata-aatcacctt-tcttaatcagatgccatttcacctgttcatag---------------------------------
    | ||||||||||||||||| |||||||| |||||||| |||||||| ||||||||||||| |||||| | |||  |  |       | ||    |   || |      || |||||   || |    |   |  |          |   | |||| |    |   |  |||  || || |  || ||||| ||||  | ||||| | |      | |||||                                   
----TTAGCTACATGGCTGAGCGTATTGTAGGGCAAGGTTCATTTGGGATTGTCTTCCAGgttagttgcaacatctttgggttttcatatatttcaccaatcaccaggaagctaagtagctaact-taacatcattaactctactagcaccactttttttgtatgtagcaaattgt-tgatacacgataaccttctcttgttaagatgtcctaaatgttcttcatgtctgtaatagtgatatcattttgaccattttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|5566746|gb|AI881612.1|AI881612
EST:     ACATGGCTGAGCGCATTGTAGGTCAAGGTTCTTTTGGGATCGNCTTCCAG                         GCTAAGTGTTTGGAGACGGGTGAGACTGTTGCCATAAAGAAGGTTCTTCAG
genomic: ACATGGCTGAGCGCATTGTAGGTCAAGGTTCTTTTGGGATCGTCTTCCAGgttatttgca ... ctgttcatagGCTAAGTGTTTGGAGACGGGTGAGACTGTTGCCATAAAGAAGGTTCTTCAG
EST: gi|19822195|gb|BQ048219.1|BQ048219
EST:     ACATGGCTGAGCGCATTGTAGGTCAAGGTTCTTTTGGGATCGTCTTCCAG                         GCTAAGTGTTTGGAGACGGGTGAGACTGTTGCCATAAAGAAGGTTCTTCAG
genomic: ACATGGCTGAGCGCATTGTAGGTCAAGGTTCTTTTGGGATCGTCTTCCAGgttatttgca ... ctgttcatagGCTAAGTGTTTGGAGACGGGTGAGACTGTTGCCATAAAGAAGGTTCTTCAG
EST: gi|32928666|gb|CF033478.1|CF033478
EST:     ACATGGCTGAGCGCATTGTAGGTCAAGGTTCTTTTGGGATCGTCTTCCAG                         GCTAAGTGTTTGGAGACGGGTGAGACTGTTGCCATAAAGAAGGTTCTTCAG
genomic: ACATGGCTGAGCGCATTGTAGGTCAAGGTTCTTTTGGGATCGTCTTCCAGgttatttgca ... ctgttcatagGCTAAGTGTTTGGAGACGGGTGAGACTGTTGCCATAAAGAAGGTTCTTCAG
EST: gi|32929341|gb|CF034153.1|CF034153
EST:     ACATGGCTGAGCGCATTGTAGGTCAAGGTTCTTTTGGGATCGTCTTCCAG                         GCTAAGTGTTTGGAGACGGGTGAGACTGTTGCCATAAAGAAGGTTCTTCAG
genomic: ACATGGCTGAGCGCATTGTAGGTCAAGGTTCTTTTGGGATCGTCTTCCAGgttatttgca ... ctgttcatagGCTAAGTGTTTGGAGACGGGTGAGACTGTTGCCATAAAGAAGGTTCTTCAG
EST: gi|32928546|gb|CF033358.1|CF033358
EST:     ACATGGCTGAGCGCATTGTAGGTCAAGGTTCTTTTGGGATCGTCTTCCAG                         GCTAAGTGTTTGGAGACGGGTGAGACTGTTGCCATAAAGAAGGTTCTTCAG
genomic: ACATGGCTGAGCGCATTGTAGGTCAAGGTTCTTTTGGGATCGTCTTCCAGgttatttgca ... ctgttcatagGCTAAGTGTTTGGAGACGGGTGAGACTGTTGCCATAAAGAAGGTTCTTCAG
EST: gi|26455791|gb|CA827374.1|CA827374
EST:     ACATGGCTGAGCGCATTGTAGGTCAAGGTTCTTTTGGGATCGTCTTCCAG                         GCTAAGTGTTTGGAGACGGGTGAGACTGTTGCCATAAAGAAGGTTCTTCAG
genomic: ACATGGCTGAGCGCATTGTAGGTCAAGGTTCTTTTGGGATCGTCTTCCAGgttatttgca ... ctgttcatagGCTAAGTGTTTGGAGACGGGTGAGACTGTTGCCATAAAGAAGGTTCTTCAG
EST: gi|5566972|gb|AI881883.1|AI881883
EST:     ACATGGCTGAGCGCATTGTAGGTCAAGGTTCTTTTGGGATCGTCTTCCAG                         GCTAAGTGTTTGGAGACGGGTGAGACTGTTGCCATAAAGAAGGTTCTTCAG
genomic: ACATGGCTGAGCGCATTGTAGGTCAAGGTTCTTTTGGGATCGTCTTCCAGgttatttgca ... ctgttcatagGCTAAGTGTTTGGAGACGGGTGAGACTGTTGCCATAAAGAAGGTTCTTCAG
EST: gi|6918384|gb|AW399914.1|AW399914
EST:     ACATGGCTGAGCGCATTGTAGGTCAAGGTTCTTTTGGGATTGTCTTCCAG                         GCTAAGTGTTTGGAGACGGGTGAGACTGTTGCCATAAAGAAGGNTCTTCAG
genomic: ACATGGCTGAGCGCATTGTAGGTCAAGGTTCTTTTGGGATCGTCTTCCAGgttatttgca ... ctgttcatagGCTAAGTGTTTGGAGACGGGTGAGACTGTTGCCATAAAGAAGGTTCTTCAG
EST: gi|61117964|gb|DN558925.1|DN558925
EST:     ACATGGCTGAGCGCATTGTAGGTCAAGGTTCTTTTGGGATTGGCTTCCAG                         GCTAAGTGTTTGGAGACGGGTGAGACTGTTGCCATAAAGAAGGTTCTTCAG
genomic: ACATGGCTGAGCGCATTGTAGGTCAAGGTTCTTTTGGGATCGTCTTCCAGgttatttgca ... ctgttcatagGCTAAGTGTTTGGAGACGGGTGAGACTGTTGCCATAAAGAAGGTTCTTCAG
EST: gi|5928717|gb|AW055934.1|AW055934
EST:     ACATGGCTGAGCGCATTGTAGGTCAAGGTTCTTTTGGGATCGTCTTCCAG                         GCTAAGTGTTTGGAGACGGGTGAGACTGTTGCCATAAAGAAGGTTCTTCAG
genomic: ACATGGCTGAGCGCATTGTAGGTCAAGGTTCTTTTGGGATCGTCTTCCAGgttatttgca ... ctgttcatagGCTAAGTGTTTGGAGACGGGTGAGACTGTTGCCATAAAGAAGGTTCTTCAG
EST: gi|5268665|gb|AI770629.1|AI770629
EST:     ACATGGCTGAGCGCATTGTAGGTCAAGGTTCTTTTGGGATCGTCTTCCAG                         GCTAAGTGGTTTGGAGACGGGTGAGACTGTTGCCATAAAGAAGGTTCTTCA
genomic: ACATGGCTGAGCGCATTGTAGGTCAAGGTTCTTTTGGGATCGTCTTCCAGgttatttgca ... ctgttcatagGCTAAGTG-TTTGGAGACGGGTGAGACTGTTGCCATAAAGAAGGTTCTTCA
EST: gi|22542189|gb|BU092627.1|BU092627
EST:     ACATGGCTGAGCGCATTGTAGGTCAAGGTTCTTTTGGGATCGTCTTCCAG                         GCTAAGTGTTTGGAGACGGGTGAGACTGTTGCCATAAAGAAGGTTCTTCAG
genomic: ACATGGCTGAGCGCATTGTAGGTCAAGGTTCTTTTGGGATCGTCTTCCAGgttatttgca ... ctgttcatagGCTAAGTGTTTGGAGACGGGTGAGACTGTTGCCATAAAGAAGGTTCTTCAG
EST: gi|60349962|gb|DN216935.1|DN216935
EST:     ACATGGCTGAGCGCATTGTAGGTCAAGGTTCTTTTGGGATCGTCTTCCAG                         GCTAAGTGTTTGGAGACGGGTGAGACTGTTGCCATAAAGAAGGTTCTTCAG
genomic: ACATGGCTGAGCGCATTGTAGGTCAAGGTTCTTTTGGGATCGTCTTCCAGgttatttgca ... ctgttcatagGCTAAGTGTTTGGAGACGGGTGAGACTGTTGCCATAAAGAAGGTTCTTCAG
EST: gi|33097218|gb|CF057178.1|CF057178
EST:     ACATGGCTGAGCGCATTGTAGGTCAAGGTTCTTTTGGGATCGTCTTCCAG                         GCTAAGTGTTTGGAGACGGGTGAGACTGTTGCCATAAAGAAGGTTCTTCAG
genomic: ACATGGCTGAGCGCATTGTAGGTCAAGGTTCTTTTGGGATCGTCTTCCAGgttatttgca ... ctgttcatagGCTAAGTGTTTGGAGACGGGTGAGACTGTTGCCATAAAGAAGGTTCTTCAG
EST: gi|32863940|gb|CF003622.1|CF003622
EST:     ACATGGCTGAGCGCATTGTAGGTCAAGGTTCTTTTGGGATCGTCTTCCAG                         GCTAAGTGTTTGGAGACGGGTGAGACTGTTGCCATAAAGAAGGTTCTTCAG
genomic: ACATGGCTGAGCGCATTGTAGGTCAAGGTTCTTTTGGGATCGTCTTCCAGgttatttgca ... ctgttcatagGCTAAGTGTTTGGAGACGGGTGAGACTGTTGCCATAAAGAAGGTTCTTCAG
EST: gi|30087106|gb|CB885314.1|CB885314
EST:     ACATGGCTGAGCGCATTGTAGGTCAAGGTTCTTTTGGGATCGTCTTCCAG                         GCTAAGTGTTTGGAGACGGGTGAGACTGTTGCCATAAAGAAGGTTCTTCAG
genomic: ACATGGCTGAGCGCATTGTAGGTCAAGGTTCTTTTGGGATCGTCTTCCAGgttatttgca ... ctgttcatagGCTAAGTGTTTGGAGACGGGTGAGACTGTTGCCATAAAGAAGGTTCTTCAG